Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis

scientific article published in March 2003

Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/S0960-9822(03)00106-4
P698PubMed publication ID12620192

P2093author name stringSteven E Jacobsen
Tetsuji Kakutani
Masaomi Kato
Judith Bender
Asuka Miura
P2860cites workTargeted mutation of the DNA methyltransferase gene results in embryonic lethalityQ28131773
Chromosome organization and genic expressionQ28244628
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous geneQ28344278
Epigenetic variation in Arabidopsis disease resistanceQ28345294
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferaseQ29617298
Cytosine methylation and the ecology of intragenomic parasitesQ29618264
The rde-1 gene, RNA interference, and transposon silencing in C. elegansQ29618386
Role for DNA methylation in genomic imprintingQ29618669
Transcription of IAP endogenous retroviruses is constrained by cytosine methylationQ29618745
Endogenous targets of transcriptional gene silencing in ArabidopsisQ30651906
Demethylation-induced developmental pleiotropy in ArabidopsisQ33367680
Cloning and chromosomal mapping of nuclear genes encoding chloroplast and cytosolic glyceraldehyde-3-phosphate-dehydrogenase from Arabidopsis thaliana.Q33402110
Gene silencing: repeats that countQ33603168
Mobilization of transposons by a mutation abolishing full DNA methylation in ArabidopsisQ33946286
DNA methylation and epigenetic inheritance in plants and filamentous fungiQ34086436
Loss of methylation activates Xist in somatic but not in embryonic cellsQ34295214
DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.Q34361252
Characterization of an Arabidopsis thaliana DNA hypomethylation mutantQ34733991
Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1).Q35077392
Cytosine methylation and mammalian developmentQ35186394
Suppression of crossing-over by DNA methylation in AscobolusQ35198972
DNA modification of a maize transposable element correlates with loss of activityQ35595085
Developmental abnormalities and epimutations associated with DNA hypomethylation mutationsQ37239186
Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant developmentQ37405920
Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thalianaQ38319075
Gene number, noise reduction and biological complexityQ40514856
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylationQ43604842
Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.Q44037194
The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain geneQ47812243
Maintenance of genomic methylation requires a SWI2/SNF2-like proteinQ47964889
Genetic characterization of late-flowering traits induced by DNA hypomethylation mutation in Arabidopsis thaliana.Q52191098
Molecular mechanisms in the developmental regulation of the maize Suppressor-mutator transposable element.Q52249833
Does DNA methylation control transposition of selfish elements in the germline?Q52561168
Arabidopsis thaliana DNA methylation mutantsQ72794055
Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutationQ73544249
RNA: guiding gene silencingQ74349577
Transposons, DNA methylation and gene controlQ74804849
Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3Q77486342
Deficient in DNA methylation 1 (DDM1) defines a novel family of chromatin-remodeling factorsQ78438383
P433issue5
P407language of work or nameEnglishQ1860
P304page(s)421-426
P577publication date2003-03-01
P1433published inCurrent BiologyQ1144851
P1476titleRole of CG and non-CG methylation in immobilization of transposons in Arabidopsis
P478volume13

Reverse relations

cites work (P2860)
Q349237225-hydroxymethylcytosine is not present in appreciable quantities in Arabidopsis DNA.
Q35216900A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice.
Q35175920A histone methylation-dependent DNA methylation pathway is uniquely impaired by deficiency in Arabidopsis S-adenosylhomocysteine hydrolase
Q33551427A rich TILLING resource for studying gene function in Brassica rapa
Q35046059A role for CHROMOMETHYLASE3 in mediating transposon and euchromatin silencing during egg cell reprogramming in Arabidopsis
Q35062937A small RNA mediated regulation of a stress-activated retrotransposon and the tissue specific transposition during the reproductive period in Arabidopsis
Q44835568Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions
Q58555685Ambient Temperature-Responsive Mechanisms Coordinate Regulation of Flowering Time
Q36484672Ammonium Inhibits Chromomethylase 3-Mediated Methylation of the Arabidopsis Nitrate Reductase Gene NIA2.
Q37123390An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites.
Q34643312An internal rearrangement in an Arabidopsis inverted repeat locus impairs DNA methylation triggered by the locus
Q46283450Analysis of somaclonal variation in transgenic and regenerated plants of Arabidopsis thaliana using methylation related metAFLP and TMD markers
Q28477923Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1
Q42044651Arabidopsis proteins with a transposon-related domain act in gene silencing
Q34170257Beyond transcriptional silencing: is methylcytosine a widely conserved eukaryotic DNA elimination mechanism?
Q45974498Biogeographic conservation of the cytosine epigenome in the globally important marine, nitrogen-fixing cyanobacterium Trichodesmium.
Q45347155Bursts of retrotransposition reproduced in Arabidopsis
Q59340071CMT3 and SUVH4/KYP silence the exonic Evelknievel retroelement to allow for reconstitution of CMT1 mRNA
Q24813673Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis
Q39113151Circadian expression profiles of chromatin remodeling factor genes in Arabidopsis
Q37175967Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes.
Q34370338Conserved themes in small-RNA-mediated transposon control
Q36238540Control of development and transposon movement by DNA methylation in Arabidopsis thaliana
Q46792395Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana
Q38209747Control of transposable elements in Arabidopsis thaliana
Q36583244Control of transposon activity by a histone H3K4 demethylase in rice
Q28748730Cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic States in Arabidopsis
Q100713252Copia retrotransposons of two disjunctive Panax species: P. ginseng and P. quinquefolius
Q58700660Cork Oak Young and Traumatic Periderms Show PCD Typical Chromatin Patterns but Different Chromatin-Modifying Genes Expression
Q39003540DNA Methylation and Gene Regulation in Honeybees: From Genome-Wide Analyses to Obligatory Epialleles
Q34043905DNA Methylation on N6-Adenine in C. elegans
Q35625488DNA methylation and demethylation in Arabidopsis
Q46722631DNA methylation is critical for Arabidopsis embryogenesis and seed viability
Q34585763DNA methylation mediated control of gene expression is critical for development of crown gall tumors
Q46665348DNA methylation of the endogenous PAI genes in Arabidopsis
Q28660891DNA transposon-based gene vehicles - scenes from an evolutionary drive
Q35844917Differential epigenetic regulation within an Arabidopsis retroposon family
Q34056109Differential methylation of genes and repeats in land plants
Q36139264Divergent DNA methylation patterns associated with gene expression in rice cultivars with contrasting drought and salinity stress response
Q90043905Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize
Q36280490Dynamic and reversibility of heterochromatic gene silencing in human disease
Q59693962Dynamics and function of DNA methylation in plants
Q42941299Dysfunction of chromatin assembly factor 1 induces shortening of telomeres and loss of 45S rDNA in Arabidopsis thaliana
Q90123395Environmental and epigenetic regulation of Rider retrotransposons in tomato
Q52659717Epigenetic activation of meiotic recombination near Arabidopsis thaliana centromeres via loss of H3K9me2 and non-CG DNA methylation.
Q34569910Epigenetic control of CACTA transposon mobility in Arabidopsis thaliana
Q37771423Epigenetic control of plant immunity.
Q36975838Epigenetic control of plant stress response
Q38260030Epigenetic dynamics: role of epimarks and underlying machinery in plants exposed to abiotic stress
Q38110437Epigenetic mechanisms of plant stress responses and adaptation.
Q33288249Epigenetic natural variation in Arabidopsis thaliana
Q79840144Epigenetic regulation of the rice retrotransposon Tos17
Q36802453Epigenome confrontation triggers immediate reprogramming of DNA methylation and transposon silencing in Arabidopsis thaliana F1 epihybrids
Q33743701Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons.
Q33326979Evolution and control of imprinted FWA genes in the genus Arabidopsis
Q40337572Exogenous Transposable Elements Circumvent Identity-Based Silencing, Permitting the Dissection of Expression-Dependent Silencing.
Q42449857Features of basal and race-specific defences in photosynthetic Arabidopsis thaliana suspension cultured cells.
Q37192135Geminivirus AL2 and L2 proteins suppress transcriptional gene silencing and cause genome-wide reductions in cytosine methylation
Q28592831Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype
Q54351144Genome wide gene expression in artificially synthesized amphidiploids of Arabidopsis.
Q53013759Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.
Q79275721Genomic localization of endogenous mobile CACTA family transposons in natural variants of Arabidopsis thaliana
Q33325903Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays
Q34150883H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases
Q35941544Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatin-remodeling factor DDM1.
Q46098533Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication
Q33468400Heterochromatic siRNAs and DDM1 independently silence aberrant 5S rDNA transcripts in Arabidopsis
Q37130186Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis
Q29616098Highly integrated single-base resolution maps of the epigenome in Arabidopsis
Q31136805Homologs of Drosophila P transposons were mobile in zebrafish but have been domesticated in a common ancestor of chicken and human
Q40277562In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning.
Q42018921In planta assays involving epigenetically silenced genes reveal inhibition of cytosine methylation by genistein
Q50349037Induction of epigenetic variation in Arabidopsis by over-expression of DNA METHYLTRANSFERASE1 (MET1).
Q34805554Infection with a Virulent Strain of Wolbachia Disrupts Genome Wide-Patterns of Cytosine Methylation in the Mosquito Aedes aegypti
Q46572063Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum
Q81243375Invasion of the Arabidopsis genome by the tobacco retrotransposon Tnt1 is controlled by reversible transcriptional gene silencing
Q33868343Learning to live together: mutualism between self-splicing introns and their hosts
Q83043263Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
Q40660128Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition
Q48243570Low glutelin content1: a dominant mutation that suppresses the glutelin multigene family via RNA silencing in rice
Q40973270MSAP markers and global cytosine methylation in plants: a literature survey and comparative analysis for a wild-growing species
Q36238478Mechanism of mouse germ cell specification: a genetic program regulating epigenetic reprogramming
Q25257720Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposon
Q30777285MethylExtract: High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data.
Q35144970Methylome diversification through changes in DNA methyltransferase sequence specificity.
Q37173303Mobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor
Q34611965Molecular aspects of somatic-to-embryogenic transition in plants
Q36202400Molecular mechanisms of epigenetic variation in plants
Q36083313Natural variation for alleles under epigenetic control by the maize chromomethylase zmet2.
Q52358478Nucleosomes and DNA methylation shape meiotic DSB frequency in Arabidopsis thaliana transposons and gene regulatory regions.
Q92461157Old cogs, new tricks: the evolution of gene expression in a chromatin context
Q37214026Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis.
Q37617483Pistil Transcriptome Analysis to Disclose Genes and Gene Products Related to Aposporous Apomixis in Hypericum perforatum L.
Q42977982Post-injury stress signals alter epigenetic profile of cytosine methylation in the proviral genome of endogenous retroviruses
Q80275859Progress in plant CACTA elements
Q37052373Progressive loss of DNA methylation releases epigenetic gene silencing from a tandemly repeated maize Myb gene
Q83395555Proline dehydrogenase contributes to pathogen defense in Arabidopsis
Q33373064Promoter DNA hypermethylation and gene repression in undifferentiated Arabidopsis cells
Q37649406Quantitative epigenetics: DNA sequence variation need not apply
Q103806206RNA interference-independent reprogramming of DNA methylation in Arabidopsis
Q41886972RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway
Q26781830RNA-based regulation of transposon expression
Q37737507RNA-directed DNA methylation: mechanisms and functions
Q36571710RNAi of met1 reduces DNA methylation and induces genome-specific changes in gene expression and centromeric small RNA accumulation in Arabidopsis allopolyploids
Q51180823Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina.
Q35084742Recent Progress in Development of Tnt1 Functional Genomics Platform for Medicago truncatula and Lotus japonicus in Bulgaria
Q46087328Regulation of seed size by hypomethylation of maternal and paternal genomes
Q35762302Repetitive sequence environment distinguishes housekeeping genes
Q83198247Restriction landmark genome scanning method using isoschizomers (MspI/HpaII) for DNA methylation analysis
Q38174044Roles, and establishment, maintenance and erasing of the epigenetic cytosine methylation marks in plants
Q48081972SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice
Q54416379Search for methylation-sensitive amplification polymorphisms associated with the mantled variant phenotype in oil palm (Elaeis guineensis Jacq).
Q33987658Single-base-resolution methylomes of Populus trichocarpa reveal the association between DNA methylation and drought stress
Q37965789Small RNAs and transposon silencing in plants
Q38164266Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response
Q38705952Space, the final frontier: A critical review of recent experiments performed in microgravity
Q33742118Stress-induced activation of heterochromatic transcription.
Q35749932Structure and function of eukaryotic DNA methyltransferases
Q38321585The Arabidopsis heterochromatin protein1 homolog (TERMINAL FLOWER2) silences genes within the euchromatic region but not genes positioned in heterochromatin.
Q54141135The Combined Bisulfite Restriction Analysis (COBRA) Assay for the Analysis of Locus-Specific Changes in Methylation Patterns.
Q38985373The DNA methylation level against the background of the genome size and t-heterochromatin content in some species of the genus Secale L
Q38883807The Evolutionary Dynamics of Orthologs That Shift in Gene Body Methylation between Arabidopsis Species
Q36983139The Small Nuclear Genomes of Selaginella Are Associated with a Low Rate of Genome Size Evolution
Q33742084The de novo cytosine methyltransferase DRM2 requires intact UBA domains and a catalytically mutated paralog DRM3 during RNA-directed DNA methylation in Arabidopsis thaliana.
Q34564629The effect of stress on genome regulation and structure
Q34642591The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs.
Q34587447The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize
Q35889567The role of RNA interference in heterochromatic silencing
Q26782771The role of chromatin modifications in somatic embryogenesis in plants
Q35151907Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome.
Q33482526Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice
Q51865484Tissue-specific differences in cytosine methylation and their association with differential gene expression in sorghum.
Q46156568Tracking the genome-wide outcomes of a transposable element burst over decades of amplification
Q81041469Transcript profiling of the hypomethylated hog1 mutant of Arabidopsis
Q35967272Transcription from an upstream promoter controls methylation signaling from an inverted repeat of endogenous genes in Arabidopsis
Q34587830Transcriptome analysis of developing ovules in rice isolated by laser microdissection
Q35227971Transmission of epi-alleles with MET1-dependent dense methylation in Arabidopsis thaliana
Q34335454Transposable elements and genome size variations in plants
Q33675473Transpositional reactivation of the Dart transposon family in rice lines derived from introgressive hybridization with Zizania latifolia
Q90117767Transposon age and non-CG methylation
Q36238634Transposons, tandem repeats, and the silencing of imprinted genes
Q64071374UAP56 associates with DRM2 and is localized to chromatin in Arabidopsis
Q34084283VIM proteins regulate transcription exclusively through the MET1 cytosine methylation pathway
Q42213217Virus-induced gene silencing in transgenic plants: transgene silencing and reactivation associate with two patterns of transgene body methylation

Search more.