Differential epigenetic regulation within an Arabidopsis retroposon family

scientific article published on 4 March 2007

Differential epigenetic regulation within an Arabidopsis retroposon family is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1534/GENETICS.107.071092
P932PMC publication ID1893068
P698PubMed publication ID17339215
P5875ResearchGate publication ID6467965

P2093author name stringEric J Richards
Sanjida H Rangwala
P2860cites workLocus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genesQ24540245
Genetic and functional diversification of small RNA pathways in plantsQ24797901
Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modificationQ24800187
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final releaseQ24804698
Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in ArabidopsisQ24813673
Meiotically stable natural epialleles of Sadhu, a novel Arabidopsis retroposonQ25257720
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous geneQ28344278
Identification of Arabidopsis histone deacetylase HDA6 mutants that affect transgene expressionQ28364426
RNAi, DRD1, and histone methylation actively target developmentally important non-CG DNA methylation in arabidopsisQ28469008
Repbase Update, a database of eukaryotic repetitive elementsQ29547460
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferaseQ29617298
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylationQ29618650
Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factorsQ33257267
Two Arabidopsis methylation-deficiency mutations confer only partial effects on a methylated endogenous gene familyQ33931695
Mobilization of transposons by a mutation abolishing full DNA methylation in ArabidopsisQ33946286
RNA polymerase IV directs silencing of endogenous DNA.Q33984841
A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencingQ34028166
DNA methylation and the frequency of CpG in animal DNA.Q34252001
An RNA-dependent RNA polymerase is required for paramutation in maizeQ34569244
Epigenetic control of CACTA transposon mobility in Arabidopsis thalianaQ34569910
The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maizeQ34587447
A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in ArabidopsisQ34604260
Arabidopsis MET1 cytosine methyltransferase mutantsQ34617210
COBRA: a sensitive and quantitative DNA methylation assayQ34630070
Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis.Q34766925
Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1).Q35077392
RNA silencing and genome regulation.Q36113252
Developmental abnormalities and epimutations associated with DNA hypomethylation mutationsQ37239186
Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3.Q37592817
Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thalianaQ38319075
Confounded cytosine! Tinkering and the evolution of DNA.Q43544554
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylationQ43604842
Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.Q44037194
Role of CG and non-CG methylation in immobilization of transposons in ArabidopsisQ44348859
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation.Q44696942
A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominanceQ44781762
Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencingQ46125181
Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associationsQ48128629
Atypical RNA polymerase subunits required for RNA-directed DNA methylationQ48136173
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formationQ48146967
Transposon silencing in the Caenorhabditis elegans germ line by natural RNAiQ59093938
Arabidopsis thaliana DNA methylation mutantsQ72794055
Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutationQ73544249
Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3Q77486342
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferaseQ83043263
P433issue1
P407language of work or nameEnglishQ1860
P1104number of pages10
P304page(s)151-160
P577publication date2007-03-04
P1433published inGeneticsQ3100575
P1476titleDifferential epigenetic regulation within an Arabidopsis retroposon family
P478volume176

Reverse relations

cites work (P2860)
Q37976649An epigenetic integrator: new insights into genome regulation, environmental stress responses and developmental controls by histone deacetylase 6.
Q28477923Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1
Q43147280Cooperative activity of DNA methyltransferases for maintenance of symmetrical and non-symmetrical cytosine methylation in Arabidopsis thaliana
Q37781421DNA methylation systems and targets in plants
Q34022215Decoding the Epigenetic Language of Plant Development
Q36665949Diversification of the core RNA interference machinery in Chlamydomonas reinhardtii and the role of DCL1 in transposon silencing
Q33470970Dynamics of transposable elements: towards a community ecology of the genome
Q26823692Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation
Q34618183Epigenomic plasticity within populations: its evolutionary significance and potential.
Q36277190Genetically regulated epigenetic transcriptional activation of retrotransposon insertion confers mouse dactylaplasia phenotype
Q50349037Induction of epigenetic variation in Arabidopsis by over-expression of DNA METHYLTRANSFERASE1 (MET1).
Q33885685Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation
Q33500141Phytochrome B and histone deacetylase 6 control light-induced chromatin compaction in Arabidopsis thaliana
Q36448550Quantification and Gene Expression Analysis of Histone Deacetylases in Common Bean during Rust Fungal Inoculation
Q37737507RNA-directed DNA methylation: mechanisms and functions
Q38174044Roles, and establishment, maintenance and erasing of the epigenetic cytosine methylation marks in plants
Q33763576The structure, organization and radiation of Sadhu non-long terminal repeat retroelements in Arabidopsis species
Q33482526Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice
Q81041469Transcript profiling of the hypomethylated hog1 mutant of Arabidopsis
Q48073015Transposition of a 600 thousand-year-old LTR retrotransposon in the model legume Lotus japonicus

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