| scholarly article | Q13442814 |
| P50 | author | Jeffrey Ross-Ibarra | Q42707360 |
| Nathan M Springer | Q58333507 | ||
| Sarah N Anderson | Q61125548 | ||
| Michelle C Stitzer | Q88037439 | ||
| Peng Zhou | Q90043900 | ||
| Cory D. Hirsch | Q40583381 | ||
| P2860 | cites work | Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis | Q44348859 |
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| An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development. | Q50473396 | ||
| Selective epigenetic control of retrotransposition in Arabidopsis. | Q51926767 | ||
| Expression and post-transcriptional regulation of maize transposable element MuDR and its derivatives. | Q54373545 | ||
| The case for not masking away repetitive DNA. | Q55315144 | ||
| Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways. | Q55397931 | ||
| Alternative splicing induced by insertion of retrotransposons into the maize waxy gene | Q67504118 | ||
| Detection and abundance of mRNA and protein encoded by transposable element activator (Ac) in maize | Q67914344 | ||
| Discovery of transposable element activity among progeny of tissue culture--derived maize plants | Q81127930 | ||
| [Stress activation and genomic impact of plant retrotransposons] | Q81875109 | ||
| Dynamic Patterns of Gene Expression Additivity and Regulatory Variation throughout Maize Development | Q90799497 | ||
| Transposable elements contribute to dynamic genome content in maize | Q92414443 | ||
| Spontaneous mutations in maize pollen are frequent in some lines and arise mainly from retrotranspositions and deletions | Q93137802 | ||
| TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions | Q21999527 | ||
| The origin and behavior of mutable loci in maize | Q24519263 | ||
| Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants | Q26809985 | ||
| Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 | Q29547403 | ||
| HTSeq--a Python framework to work with high-throughput sequencing data | Q29614489 | ||
| A unified classification system for eukaryotic transposable elements | Q29617222 | ||
| Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome | Q30805357 | ||
| Methylation-spanning linker libraries link gene-rich regions and identify epigenetic boundaries in Zea mays | Q30845610 | ||
| Transcriptional activity of transposable elements in maize | Q30990697 | ||
| Considerations and complications of mapping small RNA high-throughput data to transposable elements | Q31164955 | ||
| A benchmark of gene expression tissue-specificity metrics | Q33726821 | ||
| Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis | Q33946286 | ||
| Structure and coding properties of Bs1, a maize retrovirus-like transposon | Q34297116 | ||
| Spreading of heterochromatin is limited to specific families of maize retrotransposons | Q34524725 | ||
| Mendelian and non-Mendelian regulation of gene expression in maize | Q34558058 | ||
| The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize | Q34587447 | ||
| Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome. | Q35151907 | ||
| Genomic distribution of H3K9me2 and DNA methylation in a maize genome | Q35224770 | ||
| Transposable elements contribute to activation of maize genes in response to abiotic stress | Q35540124 | ||
| Genic and nongenic contributions to natural variation of quantitative traits in maize | Q36446213 | ||
| Epigenetic reprogramming and small RNA silencing of transposable elements in pollen | Q37142129 | ||
| Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes. | Q37175967 | ||
| Retrotransposons of rice involved in mutations induced by tissue culture | Q37440375 | ||
| Molecular basis of mutations at the waxy locus of maize: correlation with the fine structure genetic map. | Q37692090 | ||
| Transposable element origins of epigenetic gene regulation | Q37858797 | ||
| Integration of omic networks in a developmental atlas of maize. | Q38443626 | ||
| Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize | Q38667699 | ||
| Specific expression of the tobacco Tnt1 retrotransposon in protoplasts | Q41081459 | ||
| Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics | Q42641200 | ||
| Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS. | Q42682601 | ||
| P4510 | describes a project that uses | DESeq2 | Q113018293 |
| P433 | issue | 11 | |
| P304 | page(s) | 3673-3682 | |
| P577 | publication date | 2019-11-05 | |
| P1433 | published in | G3 | Q5512701 |
| P1476 | title | Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize | |
| P478 | volume | 9 |
| Q99711590 | Different Families of Retrotransposons and DNA Transposons Are Actively Transcribed and May Have Transposed Recently in Physcomitrium (Physcomitrella) patens |
| Q115031569 | Environmental response in gene expression and DNA methylation reveals factors influencing the adaptive potential of Arabidopsis lyrata |
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