| P50 | author | Esteban Meca | Q61756731 |
| | Maud I Tenaillon | Q83384434 |
| | Brandon S Gaut | Q90045858 |
| P2093 | author name string | Concepcion M Diez | |
| P2860 | cites work | Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice | Q22065740 |
| | Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium | Q22065742 |
| | The B73 Maize Genome: Complexity, Diversity, and Dynamics | Q22065899 |
| | Mapping and quantifying mammalian transcriptomes by RNA-Seq | Q22122035 |
| | Establishing, maintaining and modifying DNA methylation patterns in plants and animals | Q24630397 |
| | Fast and accurate long-read alignment with Burrows-Wheeler transform | Q29547193 |
| | Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments | Q29614452 |
| | SSAHA: a fast search method for large DNA databases | Q29614458 |
| | A unified classification system for eukaryotic transposable elements | Q29617222 |
| | Transposable elements and the epigenetic regulation of the genome | Q29617224 |
| | The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA. | Q30448141 |
| | Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome | Q30731528 |
| | Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome | Q30912427 |
| | Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs | Q30914307 |
| | Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors | Q33257267 |
| | Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). | Q33296298 |
| | Detailed analysis of a contiguous 22-Mb region of the maize genome | Q33516552 |
| | Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids | Q33525231 |
| | Genome size variation in wild and cultivated maize along altitudinal gradients. | Q33989718 |
| | Heritable epigenetic variation among maize inbreds | Q34085631 |
| | The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story. | Q34221027 |
| | Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor | Q34341628 |
| | Epigenetic reprogramming during vegetative phase change in maize | Q34438369 |
| | Spreading of heterochromatin is limited to specific families of maize retrotransposons | Q34524725 |
| | The molecular genetics of crop domestication | Q34594954 |
| | The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs. | Q34642591 |
| | Cutadapt removes adapter sequences from high-throughput sequencing reads | Q55953584 |
| | Intracellular battlegrounds: conflict and cooperation between transposable elements | Q73252051 |
| | Maize gene atlas developed by RNA sequencing and comparative evaluation of transcriptomes based on RNA sequencing and microarrays | Q34700082 |
| | MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant | Q35056720 |
| | Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus | Q35214968 |
| | Consistent over-estimation of gene number in complex plant genomes. | Q35921783 |
| | Repeat associated small RNAs vary among parents and following hybridization in maize | Q36069036 |
| | Megabase-scale inversion polymorphism in the wild ancestor of maize | Q36076913 |
| | DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons | Q36236706 |
| | DNA sequence evidence for the segmental allotetraploid origin of maize | Q36240438 |
| | Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice | Q36685118 |
| | Active transposition in genomes | Q36729306 |
| | Transposable elements and the plant pan-genomes | Q36735901 |
| | Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant | Q36937105 |
| | Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA | Q36970371 |
| | Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids | Q36998780 |
| | Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population. | Q37207914 |
| | Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression | Q37287376 |
| | Epigenetic regulation of transposable elements in plants | Q37324789 |
| | Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons? | Q37471851 |
| | A triptych of the evolution of plant transposable elements | Q37764521 |
| | Transposable element origins of epigenetic gene regulation | Q37858797 |
| | Regulation of transposable elements in maize | Q38028679 |
| | Classification and comparison of small RNAs from plants | Q38075011 |
| | Maize HapMap2 identifies extant variation from a genome in flux. | Q38943891 |
| | Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians | Q42707286 |
| | Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis | Q44348859 |
| | Recent retrotransposon insertions are methylated and phylogenetically clustered in japonica rice (Oryza sativa spp. japonica). | Q46006120 |
| | The paleontology of intergene retrotransposons of maize | Q47750190 |
| | Reconstructing de novo silencing of an active plant retrotransposon. | Q48010011 |
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 4 | |
| P921 | main subject | maize | Q11575 |
| P304 | page(s) | e1004298 | |
| P577 | publication date | 2014-04-17 | |
| P1433 | published in | PLOS Genetics | Q1893441 |
| P1476 | title | Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome | |
| P478 | volume | 10 | |