Evolutionary dynamics of transposable elements in a small RNA world

scientific article published on November 11, 2010

Evolutionary dynamics of transposable elements in a small RNA world is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.TIG.2010.10.003
P953full work available at URLhttps://api.elsevier.com/content/article/PII:S016895251000209X?httpAccept=text/plain
https://api.elsevier.com/content/article/PII:S016895251000209X?httpAccept=text/xml
P698PubMed publication ID21074888
P5875ResearchGate publication ID47790319

P50authorJustin P. BlumenstielQ37830139
P2860cites workInitial sequencing and analysis of the human genomeQ21045365
Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripesQ22065831
Selfish DNA: a sexually-transmitted nuclear parasiteQ24532152
The evolution of RNAi as a defence against viruses and transposable elementsQ24651901
Small silencing RNAs: an expanding universeQ24653997
Unique germ-line organelle, nuage, functions to repress selfish genetic elements in Drosophila melanogasterQ24683818
Positive selection drives the evolution of rhino, a member of the heterochromatin protein 1 family in DrosophilaQ24811626
The small RNA profile during Drosophila melanogaster developmentQ28201894
RNA-mediated chromatin-based silencing in plantsQ28236381
gurken and the I factor retrotransposon RNAs share common localization signals and machineryQ28259364
The molecular basis of P-M hybrid dysgenesis: the role of the P element, a P-strain-specific transposon familyQ28265035
RITS acts in cis to promote RNA interference-mediated transcriptional and post-transcriptional silencingQ28287265
Discrete small RNA-generating loci as master regulators of transposon activity in DrosophilaQ28292093
Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethalityQ28507386
A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in miceQ28511242
Developmentally regulated piRNA clusters implicate MILI in transposon controlQ28593121
A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylationQ28755663
Transposable elements and the evolution of regulatory networksQ28756349
Population bottlenecks as a potential major shaping force of human genome architectureQ28757319
Collapse of Germline piRNAs in the Absence of Argonaute3 Reveals Somatic piRNAs in FliesQ29028136
Mobile elements: drivers of genome evolutionQ29547669
The Piwi-piRNA pathway provides an adaptive defense in the transposon arms raceQ29614715
A distinct small RNA pathway silences selfish genetic elements in the germlineQ29614717
Small RNAs as guardians of the genomeQ29617221
Transposable elements and the epigenetic regulation of the genomeQ29617224
Alu repeats and human genomic diversityQ29618341
The rde-1 gene, RNA interference, and transposon silencing in C. elegansQ29618386
An epigenetic role for maternally inherited piRNAs in transposon silencingQ33585189
Population dynamics of PIWI-interacting RNAs (piRNAs) and their targets in DrosophilaQ33618933
MicroRNA activity is suppressed in mouse oocytesQ33667949
Transposable elements in natural populations of Drosophila melanogasterQ33856655
MicroRNA function is globally suppressed in mouse oocytes and early embryosQ33859934
Proviral amplification of the Gypsy endogenous retrovirus of Drosophila melanogaster involves env-independent invasion of the female germlineQ33890892
Specialized piRNA pathways act in germline and somatic tissues of the Drosophila ovaryQ33901565
RNAi and heterochromatin repress centromeric meiotic recombinationQ33928327
The maternally inherited regulation of P elements in Drosophila melanogaster can be elicited by two P copies at cytological site 1A on the X chromosomeQ33958564
Hybrid dysgenesis in Drosophila melanogaster: the biology of female and male sterilityQ33993352
Evidence for maternally transmitted small interfering RNA in the repression of transposition in Drosophila virilisQ34116149
Eggs to die for: cell death during Drosophila oogenesisQ34119271
Perspective: transposable elements, parasitic DNA, and genome evolutionQ34192362
The first steps of transposable elements invasion: parasitic strategy vs. genetic driftQ34570688
Direct estimation of per nucleotide and genomic deleterious mutation rates in DrosophilaQ34597710
Mu killer Causes the Heritable Inactivation of the Mutator Family of Transposable Elements in Zea maysQ34618803
zucchini and squash encode two putative nucleases required for rasiRNA production in the Drosophila germlineQ34633591
Viral particles of the endogenous retrovirus ZAM from Drosophila melanogaster use a pre-existing endosome/exosome pathway for transfer to the oocyte.Q34881282
The fate of transposable elements in asexual populationsQ35082947
Element 1360 and RNAi components contribute to HP1-dependent silencing of a pericentric reporterQ35239502
The ecology of the genome - mobile DNA elements and their hostsQ36004587
Repeat-associated siRNAs cause chromatin silencing of retrotransposons in the Drosophila melanogaster germlineQ36059543
Control of female gamete formation by a small RNA pathway in ArabidopsisQ36185453
piRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germlineQ36937109
The Argonaute protein familyQ37096233
A bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in Drosophila retrotransposons.Q37111421
Epigenetic reprogramming and small RNA silencing of transposable elements in pollenQ37142129
Roles of RNA polymerase IV in gene silencingQ37178200
Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expressionQ37287376
Epigenetic regulation of transposable elements in plantsQ37324789
Symmetry breaking during Drosophila oogenesisQ37342310
The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters.Q37406170
Evolution of the Caenorhabditis elegans genomeQ37415864
Transposable elements in the mammalian germline: a comfortable niche or a deadly trap?Q37742436
The population genetics of Drosophila transposable elementsQ38321781
Mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD.Q39749476
Transposon dynamics and the breeding systemQ40751654
Sure facts, speculations, and open questions about the evolution of transposable element copy numberQ41756995
Transposable elements in inbreeding and outbreeding populationsQ42965601
Maelstrom, a Drosophila spindle-class gene, encodes a protein that colocalizes with Vasa and RDE1/AGO1 homolog, Aubergine, in nuageQ44285291
Heritable transposon silencing initiated by a naturally occurring transposon inverted duplicationQ46098533
Gypsy/Ty3-like elements in the genome of the terrestrial Salamander hydromantes (Amphibia, Urodela).Q48057183
Different regulatory mechanisms underlie similar transposable element profiles in pufferfish and fruitfliesQ48175103
Measuring the rates of transcriptional elongation in the female Drosophila melanogaster germ line by nuclear run-on.Q51759762
Conserved ribonuclease, Eri1, negatively regulates heterochromatin assembly in fission yeast.Q52014102
hobo is responsible for the induction of hybrid dysgenesis by strains of Drosophila melanogaster bearing the male recombination factor 23.5MRF.Q52457922
The genomic rate of transposable element movement in Drosophila melanogaster.Q52540829
Positive association between copia transposition rate and copy number in Drosophila melanogaster.Q52549518
Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila.Q52605438
Tethering RITS to a nascent transcript initiates RNAi- and heterochromatin-dependent gene silencing.Q53619809
Uniparental expression of PolIV-dependent siRNAs in developing endosperm of ArabidopsisQ56926914
Selfish genetic elements and speciationQ57212768
The population dynamics of transposable elementsQ59508972
On the role of unequal exchange in the containment of transposable element copy numberQ69851798
The molecular basis of I-R hybrid dysgenesis in Drosophila melanogaster: identification, cloning, and properties of the I factorQ72388917
Transposable element number in mixed mating populationsQ74313724
Parent-dependent loss of gene silencing during interspecies hybridizationQ79849968
Fixation of transposable elements in the Drosophila melanogaster genomeQ81240290
Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodesQ82230505
P433issue1
P407language of work or nameEnglishQ1860
P921main subjecttransposable elementQ121438
molecular evolutionQ856529
evolutionary dynamicsQ5418700
P304page(s)23-31
P577publication date2010-11-11
P1433published inTrends in GeneticsQ2451468
P1476titleEvolutionary dynamics of transposable elements in a small RNA world
P478volume27

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cites work (P2860)
Q47841088A Pooled Sequencing Approach Identifies a Candidate Meiotic Driver in Drosophila
Q37951390A guided tour of large genome size in animals: what we know and where we are heading.
Q56992563An introduction to the vast world of transposable elements – what about the diatoms?
Q37003089Analysis of piRNA-mediated silencing of active TEs in Drosophila melanogaster suggests limits on the evolution of host genome defense
Q33642563Billions of basepairs of recently expanded, repetitive sequences are eliminated from the somatic genome during copepod development.
Q46681274Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes
Q33575809Birth, death, and diversification of mobile promoters in prokaryotes
Q38039110Can silencing of transposons contribute to variation in effector gene expression in Phytophthora infestans?
Q34223777Changes in DNA methylation and transgenerational mobilization of a transposable element (mPing) by the topoisomerase II inhibitor, etoposide, in rice
Q37919383Co-evolution between transposable elements and their hosts: a major factor in genome size evolution?
Q48647191Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes
Q46622606Differential introgression and reorganization of retrotransposons in hybrid zones between wild wheats
Q91826280Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution
Q64993159Dynamics of Transposable Element Invasions with piRNA Clusters.
Q38661616Ectopic application of the repressive histone modification H3K9me2 establishes post-zygotic reproductive isolation in Arabidopsis thaliana
Q93025337Enforcement is central to the evolution of cooperation
Q33674398Enhanced evolution by stochastically variable modification of epigenetic marks in the early embryo.
Q36698269Evaluating risks of insertional mutagenesis by DNA transposons in gene therapy
Q52745073Evolution and dynamics of small RNA response to a retroelement invasion in Drosophila.
Q50068308Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice
Q35810622Evolutionary Implications of Mechanistic Models of TE-Mediated Hybrid Incompatibility
Q51833620Evolutionary characterization of Ty3/gypsy-like LTR retrotransposons in the parasitic cestode Echinococcus granulosus.
Q42203493Evolutionary history of the Tip100 transposon in the genus Ipomoea.
Q26752905Evolutionary interaction between W/Y chromosome and transposable elements
Q38164153Evolutionary transitions in individuality: insights from transposable elements
Q55481764Extensive exchange of transposable elements in the Drosophila pseudoobscura group.
Q37948969Genetic variation and DNA replication timing, or why is there late replicating DNA?
Q38562840Genome Biology and the Evolution of Cell-Size Diversity
Q84206006Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements
Q34581766Genome sequencing of Sporisorium scitamineum provides insights into the pathogenic mechanisms of sugarcane smut
Q36268123Genomic variation in natural populations of Drosophila melanogaster
Q28727429Large-scale transcriptome analysis of retroelements in the migratory locust, Locusta migratoria
Q36439815Long-term and short-term evolutionary impacts of transposable elements on Drosophila
Q36000665Male germline control of transposable elements
Q52613189Modeling Interactions between Transposable Elements and the Plant Epigenetic Response: A Surprising Reliance on Element Retention.
Q34514478No detectable effect of the DNA methyltransferase DNMT2 on Drosophila meiotic recombination
Q40984243Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution.
Q37568285Phenotypic diversification by gene silencing in Phytophthora plant pathogens
Q58098393QTL mapping of natural variation reveals that the developmental regulator bruno reduces tolerance to P-element transposition in the Drosophila female germline
Q38925580Reexamining the P-Element Invasion of Drosophila melanogaster Through the Lens of piRNA Silencing
Q38883001Retroviruses and retroelements in diseases and in gene therapy: 15 years later
Q28742794Selfish genetic elements, genetic conflict, and evolutionary innovation
Q46090732Small RNA biology: from fundamental studies to applications
Q46471181Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus
Q91719698The Evolution of Small-RNA-Mediated Silencing of an Invading Transposable Element
Q35126313The Hmr and Lhr hybrid incompatibility genes suppress a broad range of heterochromatic repeats
Q86728322The genomic proliferation of transposable elements in colonizing populations: Schistosoma mansoni in the new world
Q38270618The peculiarities of piRNA expression upon heat shock exposure in Drosophila melanogaster.
Q57472098The somatic piRNA pathway controls germline transposition over generations
Q47353087Unusual augmentation of germline genome size in Cyclops kolensis (Crustacea, Copepoda): further evidence in support of a revised model of chromatin diminution
Q92219708Updates on Aptamer Research
Q36926720What happens when Penelope comes?: An unusual retroelement invades a host species genome exploring different strategies
Q35900544What makes transposable elements move in the Drosophila genome?
Q90701901piRNA clusters need a minimum threshold size to control transposable element invasions

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