| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1036869843 |
| P356 | DOI | 10.1038/ISMEJ.2013.144 |
| P932 | PMC publication ID | 3869020 |
| P698 | PubMed publication ID | 24030599 |
| P5875 | ResearchGate publication ID | 256541062 |
| P50 | author | Edward F. DeLong | Q5342553 |
| Sangita Ganesh | Q85946688 | ||
| Frank J Stewart | Q91181976 | ||
| Darren J Parris | Q125270827 | ||
| P2860 | cites work | The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific | Q21092763 |
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| Environmental genome shotgun sequencing of the Sargasso Sea | Q27860605 | ||
| The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance | Q28240583 | ||
| The global, ppGpp-mediated stringent response to amino acid starvation in Escherichia coli | Q28277451 | ||
| Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation | Q28476065 | ||
| Denitrifying alphaproteobacteria from the Arabian Sea that express nosZ, the gene encoding nitrous oxide reductase, in oxic and suboxic waters | Q28709129 | ||
| A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem | Q28732372 | ||
| Selfish genetic elements, genetic conflict, and evolutionary innovation | Q28742794 | ||
| Downward flux of particulate organic matter in the ocean: a particle decomposition paradox | Q29035781 | ||
| Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences | Q29547172 | ||
| UniFrac: a new phylogenetic method for comparing microbial communities | Q29547435 | ||
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| Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge | Q30571625 | ||
| Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil | Q30839798 | ||
| Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon | Q30905477 | ||
| Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone | Q31087253 | ||
| Marine actinobacteria: perspectives, challenges, future directions | Q31149321 | ||
| Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom | Q33251973 | ||
| Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system | Q33285812 | ||
| Microbial population structures in the deep marine biosphere | Q33301618 | ||
| Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific | Q33320874 | ||
| Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre | Q33336810 | ||
| An assessment of actinobacterial diversity in the marine environment | Q33337416 | ||
| A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones | Q33338603 | ||
| Genomic patterns of recombination, clonal divergence and environment in marine microbial populations | Q33346822 | ||
| Revising the nitrogen cycle in the Peruvian oxygen minimum zone | Q33414079 | ||
| Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre | Q33471287 | ||
| Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm | Q33477310 | ||
| Microbial community structure in the North Pacific ocean | Q33485828 | ||
| Antagonistic activity of bacteria isolated from organic aggregates of the German Wadden Sea. | Q33497529 | ||
| New insights into the diversity of marine picoeukaryotes | Q33507276 | ||
| Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia | Q33507410 | ||
| Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics | Q33539537 | ||
| Phylogeographic separation of marine and soil myxobacteria at high levels of classification. | Q33623358 | ||
| The interconnection between biofilm formation and horizontal gene transfer | Q37996597 | ||
| Pseudomonas aeruginosa twitching motility: type IV pili in action | Q38022664 | ||
| Heterotrophic bacteria and bacterivorous protozoa in oceanic macroaggregates | Q39099293 | ||
| Comparison of cell-specific activity between free-living and attached bacteria using isolates and natural assemblages. | Q39135578 | ||
| The hydrogenases and formate dehydrogenases of Escherichia coli | Q40523829 | ||
| A 'rare biosphere' microorganism contributes to sulfate reduction in a peatland | Q41114375 | ||
| Biomass production and assimilation of dissolved organic matter by SAR11 bacteria in the Northwest Atlantic Ocean | Q41988095 | ||
| Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic | Q42109589 | ||
| High-temperature-induced transposition of insertion elements in burkholderia multivorans ATCC 17616 | Q42122691 | ||
| Detoxification of sulphidic African shelf waters by blooming chemolithotrophs | Q42606052 | ||
| Ecological consequences of bacterioplankton lifestyles: changes in concepts are needed | Q43809551 | ||
| Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones | Q44095131 | ||
| Autonomous observations of in vivo fluorescence and particle backscatteringin an oceanic oxygen minimum zone | Q44436390 | ||
| Treponema denticola biofilm-induced expression of a bacteriophage, toxin-antitoxin systems and transposases. | Q45875456 | ||
| Resource partitioning and sympatric differentiation among closely related bacterioplankton. | Q45899249 | ||
| Dominance of Mycoplasma in the guts of the Long-Jawed Mudsucker, Gillichthys mirabilis, from five California salt marshes. | Q45957253 | ||
| A mannose-sensitive haemagglutinin (MSHA)-like pilus promotes attachment of Pseudoalteromonas tunicata cells to the surface of the green alga Ulva australis. | Q46027837 | ||
| Comparison of free-living and particle-associated bacterial communities in a coastal lagoon | Q46136356 | ||
| Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress | Q46680790 | ||
| Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment. | Q46692278 | ||
| Selective enrichment and molecular characterization of a previously uncultured Nitrospira-like bacterium from activated sludge | Q46944612 | ||
| Detection of methanogenic archaea in seawater particles and the digestive tract of a marine fish species | Q47968894 | ||
| Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments | Q48038054 | ||
| Free-living and aggregate-associated Planctomycetes in the Black Sea. | Q48052883 | ||
| Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients. | Q51242132 | ||
| A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast. | Q51615041 | ||
| PERSPECTIVE: TRANSPOSABLE ELEMENTS, PARASITIC DNA, AND GENOME EVOLUTION | Q56267651 | ||
| Characteristics, dynamics and significance of marine snow | Q56444396 | ||
| Intense hydrolytic enzyme activity on marine aggregates and implications for rapid particle dissolution | Q56973729 | ||
| Bacterial chemolithotrophy in the ocean is associated with sinking particles | Q57201655 | ||
| Heterogeneous archaeal communities in the particle-rich environment of an arctic shelf ecosystem | Q57211560 | ||
| Archaeaplankton in the Columbia River, its estuary and the adjacent coastal ocean, USA | Q57272534 | ||
| Antibacterial Activity of Marine Culturable Bacteria Collected from a Global Sampling of Ocean Surface Waters and Surface Swabs of Marine Organisms | Q57639488 | ||
| Oxygen minimum zones in the eastern tropical Atlantic and Pacific oceans | Q58400067 | ||
| Identification of putative methylotrophic and hydrogenotrophic methanogens within sedimenting material and copepod faecal pellets | Q58773987 | ||
| Major role of bacteria in biogeochemical fluxes in the ocean's interior | Q59075184 | ||
| Interactions between marine snow and heterotrophic bacteria: aggregate formation and microbial dynamics | Q59221472 | ||
| Diel and seasonal variations in abundance, activity, and community structure of particle-attached and free-living bacteria in NW Mediterranean Sea | Q79898406 | ||
| Mycoplasma-like organisms: occurrence with the larvae and adults of a marine bryozoan | Q81071370 | ||
| Domain evolution and functional diversification of sulfite reductases | Q81401521 | ||
| Microbial ecology of organic aggregates in aquatic ecosystems | Q106407046 | ||
| Biogenesis, architecture, and function of bacterial type IV secretion systems | Q34449723 | ||
| Metagenomic exploration of viruses throughout the Indian Ocean | Q34451821 | ||
| Co-occurring anammox, denitrification, and codenitrification in agricultural soils | Q34453818 | ||
| Marine microbes see a sea of gradients | Q34464187 | ||
| A microbial consortium couples anaerobic methane oxidation to denitrification | Q34513437 | ||
| Microbial behavior in a heterogeneous world | Q34633475 | ||
| Can microscale chemical patches persist in the sea? Microelectrode study of marine snow, fecal pellets | Q34683969 | ||
| A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer | Q35199702 | ||
| Nitrite oxidation in the Namibian oxygen minimum zone | Q35979328 | ||
| Diversify or die: generation of diversity in response to stress. | Q36178618 | ||
| Transcription profiling of the stringent response in Escherichia coli | Q36421860 | ||
| Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches | Q36670227 | ||
| Contribution of particle-bound bacteria to total microheterotrophic activity in five ponds and two marshes | Q36705690 | ||
| Endogenous oxidative stress produces diversity and adaptability in biofilm communities | Q36858633 | ||
| Genetic basis of evolutionary adaptation by Escherichia coli to stressful cycles of freezing, thawing and growth | Q36873735 | ||
| Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem | Q36889579 | ||
| The genomic basis of trophic strategy in marine bacteria | Q37337800 | ||
| Self-generated diversity produces "insurance effects" in biofilm communities | Q37621081 | ||
| Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing | Q33644220 | ||
| baySeq: empirical Bayesian methods for identifying differential expression in sequence count data | Q33653650 | ||
| Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea | Q33719848 | ||
| Microbial metatranscriptomics in a permanent marine oxygen minimum zone. | Q33787220 | ||
| IS elements as constituents of bacterial genomes | Q33836581 | ||
| Diversity and dynamics of free-living and particle-associated Betaproteobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities | Q33902660 | ||
| Enzymology and bioenergetics of respiratory nitrite ammonification. | Q33960681 | ||
| Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA | Q33984205 | ||
| Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia river, its estuary, and the adjacent coastal ocean. | Q33985477 | ||
| Bacterial community assembly based on functional genes rather than species | Q33985559 | ||
| Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter | Q33987014 | ||
| Structured multiple endosymbiosis of bacteria and archaea in a ciliate from marine sulfidic sediments: a survival mechanism in low oxygen, sulfidic sediments? | Q33990279 | ||
| Antagonistic interactions among marine pelagic bacteria | Q33990588 | ||
| Multiple bacterial symbionts in two species of co-occurring gutless oligochaete worms from Mediterranean sea grass sediments. | Q34013611 | ||
| The phylogenetic diversity of metagenomes | Q34017552 | ||
| Transposases are the most abundant, most ubiquitous genes in nature. | Q34020170 | ||
| Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. | Q34028365 | ||
| The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium | Q34031865 | ||
| A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria | Q34067963 | ||
| Metabolic strategies of free-living and aggregate-associated bacterial communities inferred from biologic and chemical profiles in the Black Sea suboxic zone | Q34069781 | ||
| Nitrite-driven anaerobic methane oxidation by oxygenic bacteria | Q34106608 | ||
| Biogeography and phylogenetic diversity of a cluster of exclusively marine myxobacteria | Q34108069 | ||
| Structure, fluctuation and magnitude of a natural grassland soil metagenome. | Q34148568 | ||
| Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota | Q34149345 | ||
| Nitrogen cycle of the open ocean: from genes to ecosystems. | Q34165219 | ||
| Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium | Q34179753 | ||
| Perspective: transposable elements, parasitic DNA, and genome evolution | Q34192362 | ||
| Extreme genome reduction in symbiotic bacteria | Q34230656 | ||
| Antagonistic interactions among marine bacteria impede the proliferation of Vibrio cholerae | Q34232416 | ||
| Microbial ecology of expanding oxygen minimum zones | Q34266951 | ||
| Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton | Q34277761 | ||
| Evaluation of 16S rDNA-based community profiling for human microbiome research | Q34312366 | ||
| The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer | Q34329676 | ||
| Oxygen minimum zones harbour novel viral communities with low diversity | Q34435061 | ||
| P433 | issue | 1 | |
| P921 | main subject | metagenomics | Q903778 |
| P304 | page(s) | 187-211 | |
| P577 | publication date | 2013-09-12 | |
| P1433 | published in | The ISME Journal | Q7741240 |
| P1476 | title | Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone | |
| P478 | volume | 8 |
| Q40483988 | 454-Pyrosequencing Analysis of Bacterial Communities from Autotrophic Nitrogen Removal Bioreactors Utilizing Universal Primers: Effect of Annealing Temperature |
| Q37338659 | A Sample-to-Sequence Protocol for Genus Targeted Transcriptomic Profiling: Application to Marine Synechococcus. |
| Q30406379 | Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones |
| Q39130108 | Aerobic and anaerobic nitrogen transformation processes in N2-fixing cyanobacterial aggregates |
| Q39850380 | Assessment of Bacterial Communities and Predictive Functional Profiling in Soils Subjected to Short-Term Fumigation-Incubation |
| Q35614456 | Bacterial biogeography in the coastal waters of northern Zhejiang, East China Sea is highly controlled by spatially structured environmental gradients. |
| Q43324023 | Bacterial community structure of a lab-scale anammox membrane bioreactor |
| Q46326311 | Bacteriohopanepolyols along redox gradients in the Humboldt Current System off northern Chile |
| Q64917270 | Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean. |
| Q36875170 | Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton |
| Q40053780 | Contrasting seasonal drivers of virus abundance and production in the North Pacific Ocean |
| Q28601705 | Deciphering ocean carbon in a changing world |
| Q92003357 | Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection |
| Q38655962 | Differences in free-living and particle-associated bacterial communities and their spatial variation in Kongsfjorden, Arctic. |
| Q55430556 | Dispersal-competition tradeoff in microbiomes in the quest for land colonization. |
| Q37067079 | Diversity and Expression of Bacterial Metacaspases in an Aquatic Ecosystem |
| Q92404415 | Double Maximum Ratios of Viruses to Bacteria in the Water Column: Implications for Different Regulating Mechanisms |
| Q64118921 | Drivers of Regional Bacterial Community Structure and Diversity in the Northwest Atlantic Ocean |
| Q39939880 | Ecological patterns, diversity and core taxa of microbial communities in groundwater-fed rapid gravity filters |
| Q42196057 | Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics |
| Q30658673 | Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter. |
| Q46257299 | Free-living chemoautotrophic and particle-attached heterotrophic prokaryotes dominate microbial assemblages along a pelagic redox gradient |
| Q89577117 | Functional profiles of phycospheric microorganisms during a marine dinoflagellate bloom |
| Q30768758 | Functional tradeoffs underpin salinity-driven divergence in microbial community composition |
| Q41930752 | Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters |
| Q35539964 | Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities |
| Q36086589 | Genomes of Abundant and Widespread Viruses from the Deep Ocean |
| Q35739532 | Global diversity and biogeography of deep-sea pelagic prokaryotes |
| Q49805641 | High Prevalence of Quorum-Sensing and Quorum-Quenching Activity among Cultivable Bacteria and Metagenomic Sequences in the Mediterranean Sea. |
| Q42668366 | High abundance and expression of transposases in bacteria from the Baltic Sea. |
| Q37382379 | Intracellular Nitrate of Marine Diatoms as a Driver of Anaerobic Nitrogen Cycling in Sinking Aggregates |
| Q42695509 | MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle |
| Q33755903 | Marine microbial metagenomics: from individual to the environment |
| Q36098185 | Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones. |
| Q35210563 | Metabolic pathways for the whole community |
| Q38644039 | Metabolic potential and in situ activity of marine Marinimicrobia bacteria in an anoxic water column |
| Q46250130 | Metabolic versatility of a novel N2 -fixing Alphaproteobacterium isolated from a marine oxygen minimum zone. |
| Q28655991 | Metagenomic insights into particles and their associated microbiota in a coastal margin ecosystem |
| Q35844684 | Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities |
| Q40681174 | Metaproteomics of aquatic microbial communities in a deep and stratified estuary. |
| Q30838097 | Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes |
| Q35832042 | Microbial Gene Abundance and Expression Patterns across a River to Ocean Salinity Gradient |
| Q28083033 | Microbial Surface Colonization and Biofilm Development in Marine Environments |
| Q35269388 | Microbial community analysis of a full-scale DEMON bioreactor. |
| Q35622234 | Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre |
| Q34413958 | Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile |
| Q59699726 | Microbial niches in marine oxygen minimum zones |
| Q34002333 | Microspatial gene expression patterns in the Amazon River Plume |
| Q47160189 | Niche Partitioning of the N Cycling Microbial Community of an Offshore Oxygen Deficient Zone |
| Q28829468 | Not All Particles Are Equal: The Selective Enrichment of Particle-Associated Bacteria from the Mediterranean Sea |
| Q60046438 | Occurrence and Fate of Ultramicrobacteria in a Full-Scale Drinking Water Treatment Plant |
| Q34440876 | Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile |
| Q48101084 | Patterns of bacterial diversity in the marine planktonic particulate matter continuum |
| Q50129748 | Phylogenetic clustering of small low nucleic acid-content bacteria across diverse freshwater ecosystems |
| Q40247560 | Phylogenetic conservation of freshwater lake habitat preference varies between abundant bacterioplankton phyla |
| Q35364018 | Redox-specialized bacterioplankton metacommunity in a temperate estuary |
| Q36177806 | Responses of soil microeukaryotic communities to short-term fumigation-incubation revealed by MiSeq amplicon sequencing |
| Q30363442 | SAR11 bacteria linked to ocean anoxia and nitrogen loss. |
| Q41716329 | Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata. |
| Q35677489 | Seasonal Dynamics of Marine Microbial Community in the South Sea of Korea |
| Q34495986 | Seeing the forest for the genes: using metagenomics to infer the aggregated traits of microbial communities. |
| Q38504964 | Selective isolation of bacteria for metagenomic analysis: Impact of membrane characteristics on bacterial filterability |
| Q57086724 | Sinking particles promote vertical connectivity in the ocean microbiome |
| Q36756402 | Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone. |
| Q35601273 | Size-fractionated diversity of eukaryotic microbial communities in the Eastern Tropical North Pacific oxygen minimum zone. |
| Q48095607 | Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia |
| Q46265601 | Spatial variability of marine bacterial and archaeal communities along the particulate matter continuum |
| Q35672093 | Standard filtration practices may significantly distort planktonic microbial diversity estimates |
| Q64465697 | Suspended Materials in River Waters Differentially Enrich Class 1 Integron- and IncP-1 Plasmid-Carrying Bacteria in Sediments |
| Q92999757 | The water depth-dependent co-occurrence patterns of marine bacteria in shallow and dynamic Southern Coast, Korea |
| Q38679971 | Trace Metal Acquisition by Marine Heterotrophic Bacterioplankton with Contrasting Trophic Strategies. |
| Q46182296 | Transcriptional Activities of the Microbial Consortium Living with the Marine Nitrogen-Fixing Cyanobacterium Trichodesmium Reveal Potential Roles in Community-Level Nitrogen Cycling |
| Q100392227 | Unveiling dynamics of size-dependent antibiotic resistome associated with microbial communities in full-scale wastewater treatment plants |
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