The struggle for life of the genome's selfish architects

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The struggle for life of the genome's selfish architects is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P6179Dimensions Publication ID1000128333
P356DOI10.1186/1745-6150-6-19
P932PMC publication ID3072357
P698PubMed publication ID21414203
P5875ResearchGate publication ID50418993

P50authorArnaud Le RouzicQ51650417
Thibaud S BoutinQ56885255
Pierre CapyQ87814617
P2093author name stringJonathan Filée
Aurélie Hua-Van
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A comparative study of retrotransposons in the centromeric regions of A and B chromosomes of maize.Q53662232
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Genomewide comparative analysis of the highly abundant transposable element DINE-1 suggests a recent transpositional burst in Drosophila yakubaQ34611547
Population dynamics of an Ac-like transposable element in self- and cross-pollinating arabidopsisQ34612987
Mu killer Causes the Heritable Inactivation of the Mutator Family of Transposable Elements in Zea maysQ34618803
A bacterial genetic screen identifies functional coding sequences of the insect mariner transposable element Famar1 amplified from the genome of the earwig, Forficula auriculariaQ34643747
Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs)Q34648743
Crosstalk among Histone ModificationsQ34657658
Helitrons on a roll: eukaryotic rolling-circle transposonsQ34686529
Transposable elements and the evolution of genome size in eukaryotesQ34790131
Molecular domestication of transposable elements: from detrimental parasites to useful host genes.Q34918319
Conjugative transposons: the tip of the iceberg.Q34985996
The biogenesis and function of PIWI proteins and piRNAs: progress and prospectQ34990505
Genomic organization of the Drosophila telomere retrotransposable elementsQ35056707
The fate of transposable elements in asexual populationsQ35082947
Epigenetic regulation of stress responses in plantsQ35114858
Organization of chromosome ends in the rice blast fungus, Magnaporthe oryzaeQ35128001
Dramatic amplification of a rice transposable element during recent domesticationQ35214942
The outs and ins of transposition: from mu to kangarooQ35610274
Insertion sequence diversity in archaeaQ35740880
Conservation and divergence of DNA methylation in eukaryotes: new insights from single base-resolution DNA methylomesQ35754817
RIP: the evolutionary cost of genome defenseQ35864153
Evolutionary dynamics of transposable elements at the centromereQ35937314
The ecology of the genome - mobile DNA elements and their hostsQ36004587
Transposable elements as sources of variation in animals and plantsQ36010477
Arabidopsis epigenetics: when RNA meets chromatin.Q36064248
LINE-1 elements and X chromosome inactivation: a function for "junk" DNA?Q36102401
Drosophila telomeric retrotransposons derived from an ancestral element that was recruited to replace telomeraseQ36177426
LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease modelQ36225278
Triton, a novel family of miniature inverted-repeat transposable elements (MITEs) in Trichosanthes kirilowii Maximowicz and its effect on gene regulation.Q50858815
Transposition of ampicillin resistance from RP4 to other replicons.Q54643018
The genetic basis of a flower color polymorphism in the common morning glory (Ipomoea purpurea).Q54736414
A universal classification of eukaryotic transposable elements implemented in Repbase.Q55049714
Epigenome dynamics: a quantitative genetics perspective.Q55050875
The functional role of pack-MULEs in rice inferred from purifying selection and expression profileQ57067104
On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for LifeQ58704769
The evolutionary dynamics of repetitive DNA in eukaryotesQ59090793
Selfish DNAs with self-restraintQ59091956
A Single-Copy IS5-Like Transposon in the Genome of a Bdelloid RotiferQ60147001
Reactivation of Mutator transposable elements of maize by ultraviolet lightQ61236248
The wrinkled-seed character of pea described by Mendel is caused by a transposon-like insertion in a gene encoding starch-branching enzymeQ68446914
On the role of unequal exchange in the containment of transposable element copy numberQ69851798
Recombination load associated with selection for increased recombinationQ71781379
Sequence rearrangement in the AT-rich minisatellite of the novel rice transposable element BashoQ74186710
Is the evolution of transposable elements modular?Q74203293
Transposable element number in mixed mating populationsQ74313724
Dynamics of transposable elements in metapopulations: a model of P element invasion in DrosophilaQ77228663
A novel mechanism of phase variation of virulence in Staphylococcus epidermidis: evidence for control of the polysaccharide intercellular adhesin synthesis by alternating insertion and excision of the insertion sequence element IS256Q77410702
I am what I eat and I eat what I am: acquisition of bacterial genes by giant virusesQ79365031
Revisiting horizontal transfer of transposable elements in DrosophilaQ81138212
Models of the population genetics of transposable elementsQ81240283
Periodic extinctions of transposable elements in bacterial lineages: evidence from intragenomic variation in multiple genomesQ82062766
Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodesQ82230505
Too many ends: aberrant transpositionQ83773117
A blessing in disguise: Transposable elements are more than parasitesQ84199102
Revising the selfish DNA hypothesis: new evidence on accumulation of transposable elements in heterochromatinQ33594313
Epigenetic histone modifications of human transposable elements: genome defense versus exaptationQ33717279
Regulatory changes as a consequence of transposon insertionQ33778110
Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangementsQ33783220
Genomic imprinting-an epigenetic gene-regulatory modelQ33814499
Diverse DNA transposons in rotifers of the class BdelloideaQ33920253
Flower color variation: a model for the experimental study of evolutionQ33946994
Three retrotransposon families in the genome of Giardia lamblia: two telomeric, one deadQ33951984
The silence of the genesQ34026959
Stress and transposable elements: co-evolution or useful parasites?Q34049943
Repetitive DNA elements, nucleosome binding and human gene expressionQ34065350
Evidence for maternally transmitted small interfering RNA in the repression of transposition in Drosophila virilisQ34116149
Histone variants in metazoan developmentQ34149623
Perspective: transposable elements, parasitic DNA, and genome evolutionQ34192362
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchisepticaQ34221221
The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiologyQ34294325
Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams-Beuren syndromeQ34315324
Shaping bacterial genomes with integrative and conjugative elementsQ34327965
Conserved themes in small-RNA-mediated transposon controlQ34370338
SINEs and LINEs: symbionts of eukaryotic genomes with a common tailQ34442069
Repeated horizontal transfer of a DNA transposon in mammals and other tetrapodsQ28756606
Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domesticaQ28757513
The significance of responses of the genome to challengeQ28913697
Controlling elements and the geneQ28913699
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maizeQ29300755
A diversity of uncharacterized reverse transcriptases in bacteriaQ29542735
The origins of genome complexityQ29547507
Role of transposable elements in heterochromatin and epigenetic controlQ29616253
DNA methylation landscapes: provocative insights from epigenomicsQ29617144
DNA transposons and the evolution of eukaryotic genomesQ29617153
A unified classification system for eukaryotic transposable elementsQ29617222
Transposable elements and the epigenetic regulation of the genomeQ29617224
Origin of a substantial fraction of human regulatory sequences from transposable elementsQ29617225
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaeaQ29617488
Linking DNA methylation and histone modification: patterns and paradigmsQ29617801
Insertion sequence-related genetic variation in resting Escherichia coli K-12.Q30011213
Strong selective sweep associated with a transposon insertion in Drosophila simulans.Q30336352
Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elementsQ30490196
Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomesQ30619568
Comparative genomics and evolutionary dynamics of Saccharomyces cerevisiae Ty elementsQ30908618
The transposon Galileo generates natural chromosomal inversions in Drosophila by ectopic recombination.Q30913673
Horizontal escape of the novel Tc1-like lepidopteran transposon TCp3.2 into Cydia pomonella granulovirus.Q32133100
Identification and mapping of expressed genes, simple sequence repeats and transposable elements in centromeric regions of rice chromosomesQ33273734
Telomeric trans-silencing: an epigenetic repression combining RNA silencing and heterochromatin formationQ33302942
Biased exonization of transposed elements in duplicated genes: A lesson from the TIF-IA geneQ33307791
Repetitive element-mediated recombination as a mechanism for new gene origination in DrosophilaQ33315562
How Athila retrotransposons survive in the Arabidopsis genomeQ33334647
Regulation of transcription in plants: mechanisms controlling developmental switchesQ33350086
The evolving functions of DNA methylationQ33367277
High rate of recent transposable element-induced adaptation in Drosophila melanogasterQ33378679
The effect of transposable element insertions on gene expression evolution in rodentsQ33404584
Darwinian evolution in the light of genomicsQ33408694
Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae.Q33418756
Transposable elements and an epigenetic basis for punctuated equilibriaQ33453627
Dynamics of transposable elements: towards a community ecology of the genomeQ33470970
Helicobacter Pylori's plasticity zones are novel transposable elementsQ33499692
A novel mechanism of transposon-mediated gene activationQ33510907
Jumping genes and epigenetics: Towards new speciesQ33526699
Repetitive DNA is associated with centromeric domains in Trypanosoma brucei but not Trypanosoma cruzi.Q39315224
Alu-containing exons are alternatively splicedQ39860930
Epigenetics for ecologistsQ40153209
Molecular characterization of two natural hotspots in the Drosophila buzzatii genome induced by transposon insertionsQ40415138
Evolution and consequences of transposable elementsQ40719873
Transposon dynamics and the breeding systemQ40751654
Cases of ancient mobile element DNA insertions that now affect gene regulationQ41010165
LTR-retrotransposons and MITEs: important players in the evolution of plant genomesQ41068242
Extensive demethylation of repetitive elements during seed development underlies gene imprintingQ41107458
Reverse transcriptase: mediator of genomic plasticityQ41128928
Sure facts, speculations, and open questions about the evolution of transposable element copy numberQ41756995
Evolution of the mammalian transcription factor binding repertoire via transposable elementsQ41955907
UV light induces IS10 transposition in Escherichia coli.Q42571999
Toothed whale monophyly reassessed by SINE insertion analysis: the absence of lineage sorting effects suggests a small population of a common ancestral speciesQ42607222
Active site sharing and subterminal hairpin recognition in a new class of DNA transposasesQ42670024
Transposable elements in inbreeding and outbreeding populationsQ42965601
Transposable element distributions in DrosophilaQ42968252
Transposable element distribution in Drosophila.Q42968255
Genetic interactions underlying flower color patterns in Antirrhinum majusQ44538635
Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungiQ44643960
A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruitQ44685385
The mariner transposable element in natural populations of Drosophila simulansQ44707755
The few virus-like genes of Cotesia congregata bracovirus.Q45419697
A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonicaQ45897464
Horizontal transfer and selection in the evolution of P elements.Q45994077
Heritable transposon silencing initiated by a naturally occurring transposon inverted duplicationQ46098533
A transcriptionally active copia-like retroelement in Citrus limon.Q46179916
Genome structure of bdelloid rotifers: shaped by asexuality or desiccation?Q47391017
The paleontology of intergene retrotransposons of maizeQ47750190
Centromeres, CENP-B and Tigger too.Q48052113
Causes of insertion sequences abundance in prokaryotic genomesQ48082049
Mobile genetic elements and sexual reproductionQ36225341
Long-term evolution of transposable elementsQ36288596
Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotesQ36579703
Transposable elements and the plant pan-genomesQ36735901
Quelling: post-transcriptional gene silencing guided by small RNAs in Neurospora crassa.Q36774878
The plant genome's methylation status and response to stress: implications for plant improvementQ36806055
The role of IS6110 in the evolution of Mycobacterium tuberculosisQ36879772
Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrataQ36893624
Sustained retrotransposition is mediated by nucleotide deletions and interelement recombinations.Q36926862
piRNA-mediated nuclear accumulation of retrotransposon transcripts in the Drosophila female germlineQ36937109
The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolutionQ36955974
Give-and-take: interactions between DNA transposons and their host plant genomesQ36962591
Induction of the mobile genetic element Dm-412 transpositions in the Drosophila genome by heat shock treatmentQ37070442
Population epigeneticsQ37109033
Epigenetic interactions between transposons and genes: lessons from plantsQ37109738
Alternative Ac/Ds transposition induces major chromosomal rearrangements in maizeQ37141803
Repetitive DNA and chromosomal rearrangements: speciation-related events in plant genomes.Q37173703
Epigenetic, transposon and small RNA determinants of hybrid dysfunctionsQ37188499
Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomesQ37201010
Genome-wide analyses of alternative splicing in plants: opportunities and challenges.Q37231296
Retrotransposable elements and human diseaseQ37250896
Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expressionQ37287376
A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogasterQ37324379
Epigenetic regulation of transposable elements in plantsQ37324789
Genetic and molecular analysis of the gypsy chromatin insulator of DrosophilaQ37350050
The evolution of plant genomes: scaling up from a population perspectiveQ37364908
The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters.Q37406170
Distribution, diversity, evolution, and survival of Helitrons in the maize genomeQ37446470
Transposable elements: powerful facilitators of evolutionQ37470360
CRISPR-based adaptive and heritable immunity in prokaryotesQ37568446
P-element homologous sequences are tandemly repeated in the genome of Drosophila guancheQ37599742
Epigenetic transitions in germ cell development and meiosisQ37809239
Structural domains and matrix attachment regions along colinear chromosomal segments of maize and sorghum.Q38500156
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P921main subjectDNAQ7430
P304page(s)19
P577publication date2011-03-17
P1433published inBiology DirectQ1954915
P1476titleThe struggle for life of the genome's selfish architects
P478volume6

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Q28660225Transposable elements: from DNA parasites to architects of metazoan evolution
Q28661923Transposable elements: powerful contributors to angiosperm evolution and diversity
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