| scholarly article | Q13442814 |
| P50 | author | Mark Blaxter | Q28805336 |
| P2093 | author name string | David M Bird | |
| David H Lunt | |||
| Amir Szitenberg | |||
| Charles H Opperman | |||
| Soyeon Cha | |||
| P2860 | cites work | Automated generation of heuristics for biological sequence comparison | Q21061202 |
| ETE: a python Environment for Tree Exploration | Q21093654 | ||
| BLAST+: architecture and applications | Q21284368 | ||
| The B73 Maize Genome: Complexity, Diversity, and Dynamics | Q22065899 | ||
| The frailty of adaptive hypotheses for the origins of organismal complexity | Q22066346 | ||
| The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism | Q22122083 | ||
| The impact of retrotransposons on human genome evolution | Q24594901 | ||
| An endogenous small interfering RNA pathway in Drosophila | Q24623214 | ||
| The evolution of RNAi as a defence against viruses and transposable elements | Q24651901 | ||
| Endogenous RNA interference provides a somatic defense against Drosophila transposons | Q24656228 | ||
| A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes | Q24797873 | ||
| MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability | Q27860817 | ||
| Tandem repeats finder: a program to analyze DNA sequences | Q27860863 | ||
| Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence | Q27929528 | ||
| Repetitive elements may comprise over two-thirds of the human genome | Q28254709 | ||
| Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells | Q28276069 | ||
| No Accumulation of Transposable Elements in Asexual Arthropods | Q28604038 | ||
| RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies | Q28658397 | ||
| Crypton transposons: identification of new diverse families and ancient domestication events | Q28742951 | ||
| Codon preferences in free-living microorganisms | Q28776145 | ||
| Search and clustering orders of magnitude faster than BLAST | Q29547431 | ||
| Repbase Update, a database of eukaryotic repetitive elements | Q29547460 | ||
| A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process | Q29547484 | ||
| The origins of genome complexity | Q29547507 | ||
| The SILVA ribosomal RNA gene database project: improved data processing and web-based tools | Q29547623 | ||
| PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating | Q29547645 | ||
| trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses | Q29547690 | ||
| The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race | Q29614715 | ||
| De novo identification of repeat families in large genomes | Q29617348 | ||
| Automated de novo identification of repeat sequence families in sequenced genomes | Q29617349 | ||
| A molecular evolutionary framework for the phylum Nematoda | Q29617373 | ||
| Asymmetric substitution patterns in the two DNA strands of bacteria | Q29618276 | ||
| Codon usage and tRNA content in unicellular and multicellular organisms | Q29618300 | ||
| The rde-1 gene, RNA interference, and transposon silencing in C. elegans | Q29618386 | ||
| LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons | Q33314625 | ||
| Transposable elements and factors influencing their success in eukaryotes | Q33881233 | ||
| Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline | Q33953709 | ||
| Transposable element dynamics among asymbiotic and ectomycorrhizal Amanita fungi. | Q34007229 | ||
| Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline | Q34012402 | ||
| An improved molecular phylogeny of the Nematoda with special emphasis on marine taxa | Q46168030 | ||
| No evidence that sex and transposable elements drive genome size variation in evening primroses. | Q46771308 | ||
| “One code to find them all”: a perl tool to conveniently parse RepeatMasker output files | Q46775222 | ||
| A role for nonadaptive processes in plant genome size evolution? | Q47445815 | ||
| STABILIZING SELECTION AND THE COMPARATIVE ANALYSIS OF ADAPTATION. | Q47779727 | ||
| Studies on the relationships between the synonymous codon usage and protein secondary structural units | Q47877153 | ||
| Gypsy/Ty3-like elements in the genome of the terrestrial Salamander hydromantes (Amphibia, Urodela). | Q48057183 | ||
| CENSOR--a program for identification and elimination of repetitive elements from DNA sequences | Q48065753 | ||
| The Saccharomyces retrotransposon Ty5 integrates preferentially into regions of silent chromatin at the telomeres and mating loci | Q48066044 | ||
| Two aspects of DNA base composition: G+C content and translation-coupled deviation from intra-strand rule of A = T and G = C. | Q52176490 | ||
| Modification of heat-shock gene expression in Drosophila melanogaster populations via transposable elements. | Q52548865 | ||
| Size matters: non-LTR retrotransposable elements and ectopic recombination in Drosophila. | Q52605438 | ||
| Growth rate-optimised tRNA abundance and codon usage. | Q54561817 | ||
| SURFACE: detecting convergent evolution from comparative data by fitting Ornstein-Uhlenbeck models with stepwise Akaike Information Criterion | Q56113495 | ||
| Phylogenetic Comparative Analysis: A Modeling Approach for Adaptive Evolution | Q56228228 | ||
| PERSPECTIVE: TRANSPOSABLE ELEMENTS, PARASITIC DNA, AND GENOME EVOLUTION | Q56267651 | ||
| Phylogenies and the Comparative Method | Q56778955 | ||
| A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences | Q56866819 | ||
| The plant parasite Pratylenchus coffeaecarries a minimal nematode genome | Q57439573 | ||
| The evolutionary dynamics of repetitive DNA in eukaryotes | Q59090793 | ||
| Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi | Q59093938 | ||
| Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins | Q67994906 | ||
| A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster | Q70174940 | ||
| Sex brings transposons and genomes into conflict | Q74203371 | ||
| Selection on Alu sequences? | Q77220181 | ||
| Transgene silencing by the host genome defense: implications for the evolution of epigenetic control mechanisms in plants and vertebrates | Q34041294 | ||
| Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system | Q34054909 | ||
| Codon usage in bacteria: correlation with gene expressivity | Q34056325 | ||
| The human LINE-1 retrotransposon creates DNA double-strand breaks. | Q34061457 | ||
| Perspective: transposable elements, parasitic DNA, and genome evolution | Q34192362 | ||
| Genome evolution: sex and the transposable element | Q34258450 | ||
| Transposable elements: an abundant and natural source of regulatory sequences for host genes. | Q34294946 | ||
| Architecture and evolution of a minute plant genome. | Q34344190 | ||
| Phylum-wide analysis of SSU rDNA reveals deep phylogenetic relationships among nematodes and accelerated evolution toward crown Clades | Q34540592 | ||
| Natural genetic variation caused by transposable elements in humans | Q34569749 | ||
| The guanine and cytosine content of genomic DNA and bacterial evolution | Q34585421 | ||
| Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans | Q34610956 | ||
| Population dynamics of an Ac-like transposable element in self- and cross-pollinating arabidopsis | Q34612987 | ||
| Alternative splicing and evolution: diversification, exon definition and function | Q34618555 | ||
| Chromodomains direct integration of retrotransposons to heterochromatin. | Q34747075 | ||
| The struggle for life of the genome's selfish architects | Q34770063 | ||
| Mating system shifts and transposable element evolution in the plant genus Capsella | Q35207857 | ||
| Codon usage and gene expression level in Dictyostelium discoideum: highly expressed genes do 'prefer' optimal codons | Q35234324 | ||
| Transposable elements | Q35237512 | ||
| Ancient and novel small RNA pathways compensate for the loss of piRNAs in multiple independent nematode lineages | Q35558916 | ||
| Inviting instability: Transposable elements, double-strand breaks, and the maintenance of genome integrity. | Q35748440 | ||
| ReproPhylo: An Environment for Reproducible Phylogenomics | Q35763503 | ||
| Reproductive Mode and the Evolution of Genome Size and Structure in Caenorhabditis Nematodes | Q35787971 | ||
| Molecular evolution in nonrecombining regions of the Drosophila melanogaster genome | Q35867637 | ||
| Transposable elements as sources of variation in animals and plants | Q36010477 | ||
| Effective sizes of macroparasite populations: a conceptual model | Q36101406 | ||
| Dictyostelium transposable element DIRS-1 has 350-base-pair inverted terminal repeats that contain a heat shock promoter | Q36258785 | ||
| Long-term evolution of transposable elements | Q36288596 | ||
| Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing. | Q36571779 | ||
| Retrotransposon Tf1 is targeted to Pol II promoters by transcription activators. | Q36710995 | ||
| Population epigenetics | Q37109033 | ||
| Epigenetic reprogramming and small RNA silencing of transposable elements in pollen | Q37142129 | ||
| Retrotransposable elements and human disease | Q37250896 | ||
| Function, targets, and evolution of Caenorhabditis elegans piRNAs | Q37633703 | ||
| The relation between recombination rate and patterns of molecular evolution and variation in Drosophila melanogaster | Q37671989 | ||
| Molecular genealogy of some nematode taxa as based on cytochrome c and globin amino acid sequences | Q38569598 | ||
| Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells | Q39984561 | ||
| Epigenetics for ecologists | Q40153209 | ||
| Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases | Q40400353 | ||
| Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes | Q40417362 | ||
| Codon usage and gene expression | Q40561153 | ||
| Alu elements in primates are preferentially lost from areas of high GC content | Q40926743 | ||
| Equal G and C contents in histone genes indicate selection pressures on mRNA secondary structure | Q41116462 | ||
| Codon usage and secondary structure of the rabbit alpha-globin mRNA: a hypothesis | Q41194734 | ||
| The evolution of selfing is accompanied by reduced efficacy of selection and purging of deleterious mutations | Q41836670 | ||
| Genome size variation and evolution in Veronica. | Q41979481 | ||
| Translational pauses during the synthesis of proteins and mRNA structure | Q42062923 | ||
| Codon usage and secondary structure of mRNA. | Q42073413 | ||
| Is your phylogeny informative? Measuring the power of comparative methods | Q42113333 | ||
| SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. | Q42160739 | ||
| How does selfing affect the dynamics of selfish transposable elements? | Q42235273 | ||
| Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization | Q42557096 | ||
| Transposable element distributions in Drosophila | Q42968252 | ||
| Transposable element distribution in Drosophila. | Q42968255 | ||
| Relationship between G + C in silent sites of codons and amino acid composition of human proteins | Q43763163 | ||
| Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi | Q44643960 | ||
| Phylogenetic signal, evolutionary process, and rate | Q45894180 | ||
| P433 | issue | 9 | |
| P921 | main subject | genetic drift | Q486420 |
| P304 | page(s) | 2964-2978 | |
| P577 | publication date | 2016-08-26 | |
| P1433 | published in | Genome Biology and Evolution | Q15817736 |
| P1476 | title | Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements | |
| P478 | volume | 8 |
| Q83228043 | Asexual reproduction reduces transposable element load in experimental yeast populations |
| Q46216976 | Comparative Genomics of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, and Dynamic Genome Change |
| Q89701667 | Complex Evolutionary History of Mboumar, a Mariner Element Widely Represented in Ant Genomes |
| Q91826280 | Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution |
| Q37682315 | Dynamics of genome size evolution in birds and mammals |
| Q36281102 | Ecological networks to unravel the routes to horizontal transposon transfers |
| Q55273863 | Evolutionary divergence of 3' UTRs in cichlid fishes. |
| Q100454937 | Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode |
| Q52613189 | Modeling Interactions between Transposable Elements and the Plant Epigenetic Response: A Surprising Reliance on Element Retention. |
| Q60146999 | Neutral Theory, Transposable Elements, and Eukaryotic Genome Evolution. |
| Q53082103 | Sex: Not all that it's cracked up to be? |
| Q92017807 | Small RNAs in parasitic nematodes - forms and functions |
| Q52601673 | The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression. |
| Q53687426 | Transposable elements and polyploid evolution in animals. |
Search more.