Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica

scientific article (publication date: July 2007)

Evolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1101/GR.6070707
P3181OpenCitations bibliographic resource ID4622331
P932PMC publication ID1899126
P698PubMed publication ID17495012
P5875ResearchGate publication ID6336978

P50authorMark BatzerQ29922066
Matthew WakefieldQ42853296
P2093author name stringAndrew J Gentles
Jerzy Jurka
Wanjun Gu
David D Pollock
Oleksiy Kohany
P2860cites workInitial sequencing and analysis of the human genomeQ21045365
Retroposed elements as archives for the evolutionary history of placental mammalsQ21092781
RAG1 core and V(D)J recombination signal sequences were derived from Transib transposonsQ21092810
Alu elements as regulators of gene expressionQ22065977
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequencesQ22122236
Genome sequence, comparative analysis and haplotype structure of the domestic dogQ22122465
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolutionQ22122484
Genome sequence of the Brown Norway rat yields insights into mammalian evolutionQ22122498
Initial sequencing and comparative analysis of the mouse genomeQ22122521
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomesQ24534193
Low-copy repeats mediate the common 3-Mb deletion in patients with velo-cardio-facial syndrome.Q24540203
Birth of a chimeric primate gene by capture of the transposase gene from a mobile elementQ24545998
MAFFT version 5: improvement in accuracy of multiple sequence alignmentQ24556683
MrBayes 3: Bayesian phylogenetic inference under mixed modelsQ26778438
Human L1 retrotransposon encodes a conserved endonuclease required for retrotranspositionQ28114795
Evolution at two levels in humans and chimpanzeesQ28141105
A large family of ancient repeat elements in the human genome is under strong selectionQ28768261
Functional noncoding sequences derived from SINEs in the mammalian genomeQ28768519
Tiggers and DNA transposon fossils in the human genomeQ28776076
Repbase Update, a database of eukaryotic repetitive elementsQ29547460
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignmentQ29614438
Heterochromatin revisitedQ29614716
Recent segmental duplications in the human genomeQ29616016
A distal enhancer and an ultraconserved exon are derived from a novel retroposonQ29616555
De novo identification of repeat families in large genomesQ29617348
Alu repeats and human diseaseQ29618262
Human L1 retrotransposition: cis preference versus trans complementationQ29618363
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and CensorQ29618732
Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybridQ32063623
Target DNA structure plays a critical role in RAG transpositionQ33263575
A Possible Influence of the Spindle Fibre on Crossing-Over in DrosophilaQ33739205
Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolutionQ34083184
Evolutionary dynamics and evolutionary history in the RTE clade of non-LTR retrotransposonsQ34091297
Mammalian retroelements.Q34153259
Perspective: transposable elements, parasitic DNA, and genome evolutionQ34192362
On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA"Q34204541
The contribution of RNAs and retroposition to evolutionary noveltiesQ34215060
Mobile elements and mammalian genome evolution.Q34279041
First-generation linkage map of the gray, short-tailed opossum, Monodelphis domestica, reveals genome-wide reduction in female recombination ratesQ34643057
Human genomic deletions mediated by recombination between Alu elements.Q34658368
Evidence for the recent horizontal transfer of long terminal repeat retrotransposonQ36548382
Cloning and characterization of centromeric DNA from Neurospora crassaQ36647263
Bovine Alu-like sequences mediate transposition of a new site-specific retroelementQ36713833
A centromere-specific retroviral element associated with breaks of synteny in macropodine marsupialsQ38477732
Reversal and convergence in marsupial chromosome evolutionQ38480123
A novel class of mammalian-specific tailless retropseudogenesQ40254107
The strange phylogenies of transposable elements: are horizontal transfers the only explantation?Q40735051
Shuffling of genes within low-copy repeats on 22q11 (LCR22) by Alu-mediated recombination events during evolutionQ40830464
Regulation of gene expression: possible role of repetitive sequencesQ41652766
Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expressionQ41995414
Rte-1, a retrotransposon-like element in Caenorhabditis elegansQ42628252
The RTE class of non-LTR retrotransposons is widely distributed in animals and is the origin of many SINEsQ44139597
Physical and genetic mapping of the human X chromosome centromere: repression of recombinationQ44785090
Computational screening of conserved genomic DNA in search of functional noncoding elementsQ46331085
Trans-kingdom transposition of the Drosophila element mariner within the protozoan Leishmania.Q47787788
Into the heart of darkness: large-scale clustering of human non-coding DNA.Q50771150
Retroviral invasion of the koala genome.Q51724716
Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation.Q54575240
Retention of Latent Centromeres in the Mammalian GenomeQ60125716
Transposable elements as a significant source of transcription regulating signalsQ63649279
A 9.75-Mb map across the centromere of human chromosome 10Q71139405
The Laboratory Opossum (Monodelphis Domestica) in Laboratory ResearchQ74440334
Similar integration but different stability of Alus and LINEs in the human genomeQ74601378
SINEs, evolution and genome structure in the opossumQ80177471
P433issue7
P407language of work or nameEnglishQ1860
P921main subjectGray short-tailed opossumQ194472
evolutionary dynamicsQ5418700
P304page(s)992-1004
P577publication date2007-07-01
P1433published inGenome ResearchQ5533485
P1476titleEvolutionary dynamics of transposable elements in the short-tailed opossum Monodelphis domestica
P478volume17

Reverse relations

cites work (P2860)
Q47309481A Role for the Mutagenic DNA Self-Catalyzed Depurination Mechanism in the Evolution of 7SL-Derived RNAs
Q37951390A guided tour of large genome size in animals: what we know and where we are heading.
Q27311365A mammalian conserved element derived from SINE displays enhancer properties recapitulating Satb2 expression in early-born callosal projection neurons
Q28757264A novel mode of enhancer evolution: the Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity
Q36642369Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes
Q21563453Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene
Q37150870Atypical relaxation of structural constraints in Hox gene clusters of the green anole lizard
Q36709762Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons.
Q37478208Centromeres: long intergenic spaces with adaptive features
Q37293212Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome
Q36435097Circular retrotransposition products generated by a LINE retrotransposon
Q36430009Comparative and evolutionary insights into CD4 gene across mammalian and avian taxa
Q92434468Convergence in LINE-1 nucleotide variations can benefit redundantly forming triplexes with lncRNA in mammalian X-chromosome inactivation
Q42523463Core-SINE blocks comprise a large fraction of monotreme genomes; implications for vertebrate chromosome evolution.
Q28648062Disentangling the relationship of the Australian marsupial orders using retrotransposon and evolutionary network analyses
Q28711397Distinct groups of repetitive families preserved in mammals correspond to different periods of regulatory innovations in vertebrates
Q30426258Distinguishing ecological from evolutionary approaches to transposable elements.
Q37738607Evolution and Diversity of Transposable Elements in Vertebrate Genomes.
Q28652010Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes
Q41955907Evolution of the mammalian transcription factor binding repertoire via transposable elements
Q45371583Evolutionary active transposable elements in the genome of the coelacanth.
Q28648490Evolutionary histories of transposable elements in the genome of the largest living marsupial carnivore, the Tasmanian devil
Q38591291Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates
Q28704585Exaptation of transposable elements into novel cis-regulatory elements: is the evidence always strong?
Q28728875Expansion of CORE-SINEs in the genome of the Tasmanian devil
Q52745440General survey of hAT transposon superfamily with highlight on hobo element in Drosophila.
Q22122236Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
Q38012958Genome size evolution: sizing mammalian genomes
Q28743833Genome-wide characterization of centromeric satellites from multiple mammalian genomes
Q33801920Genomic landscape of human, bat, and ex vivo DNA transposon integrations
Q96135199Hagfish genome reveals parallel evolution of 7SL RNA-derived SINEs
Q44180407Heterochromatin variation and LINE-1 distribution in Artibeus (Chiroptera, Phyllostomidae) from Central Amazon, Brazil
Q42095539How do mammalian transposons induce genetic variation? A conceptual framework: the age, structure, allele frequency, and genome context of transposable elements may define their wide-ranging biological impacts
Q47160381Human transposable elements in Repbase: genomic footprints from fish to humans
Q36871167Identification of repeat structure in large genomes using repeat probability clouds
Q57178139Identification of transposable elements fused in the exonic region of the olive flounder genome
Q36063492Intron Retention and TE Exonization Events in ZRANB2.
Q38134056Jumping the fine LINE between species: horizontal transfer of transposable elements in animals catalyses genome evolution
Q34468335LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons
Q36000665Male germline control of transposable elements
Q34500214Mapping the prion protein distribution in marsupials: insights from comparing opossum with mouse CNS
Q45912497Mobility pathways for vertebrate L1, L2, CR1, and RTE clade retrotransposons.
Q21092720Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis
Q46244094Natural selection beyond genes: Identification and analyses of evolutionarily conserved elements in the genome of the collared flycatcher (Ficedula albicollis).
Q28751928New superfamilies of eukaryotic DNA transposons and their internal divisions
Q46600637PiRNA-like RNAs in the marsupial Monodelphis domestica identify transcription clusters and likely marsupial transposon targets
Q36194720Positive selection of co-opted mobile genetic elements in a mammalian gene: If you can't beat them, join them
Q36670114Possible involvement of SINEs in mammalian-specific brain formation
Q28749790Reading between the LINEs to see into the past
Q41816092Recent amplification of the kangaroo endogenous retrovirus, KERV, limited to the centromere
Q28744205Recent expansion of a new Ingi-related clade of Vingi non-LTR retrotransposons in hedgehogs
Q28742153Regions identity between the genome of vertebrates and non-retroviral families of insect viruses
Q37569864Retroelements and their impact on genome evolution and functioning
Q35531702Retrofitting the genome: L1 extinction follows endogenous retroviral expansion in a group of muroid rodents
Q34776996Retroposed SNOfall--a mammalian-wide comparison of platypus snoRNAs.
Q22252317Retrotransposons Revisited: The Restraint and Rehabilitation of Parasites
Q64065726Retrotransposons evolution and impact on lncRNA and protein coding genes in pigs
Q33947370RsaI repetitive DNA in Buffalo Bubalus bubalis representing retrotransposons, conserved in bovids, are part of the functional genes
Q28710200SINEBase: a database and tool for SINE analysis
Q47428573Talua SINE biology in the genome of the Reticulitermes subterranean termites (Isoptera, Rhinotermitidae).
Q35642710Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis
Q43420513The N-terminal domains of SOCS proteins: a conserved region in the disordered N-termini of SOCS4 and 5.
Q28602207The devil is in the details: Transposable element analysis of the Tasmanian devil genome
Q50594942The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals.
Q28657449The opossum genome: insights and opportunities from an alternative mammal
Q28715946The role of Transposable Elements in shaping the combinatorial interaction of Transcription Factors
Q34024461The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates
Q34770063The struggle for life of the genome's selfish architects
Q21092722Tracking Marsupial Evolution Using Archaic Genomic Retroposon Insertions
Q28752067Tracking the past: interspersed repeats in an extinct Afrotherian mammal, Mammuthus primigenius
Q28727133Transformation of a transposon into a derived prolactin promoter with function during human pregnancy
Q28756349Transposable elements and the evolution of regulatory networks
Q33320829Transposable elements as drivers of genomic and biological diversity in vertebrates
Q28648093U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals
Q91841209Variation in base composition underlies functional and evolutionary divergence in non-LTR retrotransposons
Q42398250When Genomics Is Not Enough: Experimental Evidence for a Decrease in LINE-1 Activity During the Evolution of Australian Marsupials
Q33518525Whole genome duplications and a 'function' for junk DNA? Facts and hypotheses
Q28709935Widespread horizontal transfer of retrotransposons
Q41357943terMITEs: miniature inverted-repeat transposable elements (MITEs) in the termite genome (Blattodea: Termitoidae).

Search more.