Phylogenomic analysis of chromoviruses

scientific article published in January 2005

Phylogenomic analysis of chromoviruses is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1159/000084987
P698PubMed publication ID16093707

P2093author name stringGorinsek B
Gubensek F
Kordis D
P2860cites workImprinted microRNA genes transcribed antisense to a reciprocally imprinted retrotransposon-like geneQ48242413
Yeti - a degenerate gypsy -like LTR retrotransposon in the filamentous ascomycete Podospora anserinaQ57246160
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis toolsQ24248165
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Structure of the HP1 chromodomain bound to histone H3 methylated at lysine 9Q27638208
MEGA2: molecular evolutionary genetics analysis softwareQ27860788
Ty3/Gypsy retrotransposon fossils in mammalian genomes: did they evolve into new cellular functions?Q28142805
A retrotransposon-derived gene, PEG10, is a novel imprinted gene located on human chromosome 7q21Q28185233
The phagotrophic origin of eukaryotes and phylogenetic classification of ProtozoaQ28212529
Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeastsQ28768384
The origin and evolution of model organismsQ29618563
Ty3/Gypsy retrotransposons: description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic dataQ30601944
A new gypsy-type retrotransposon, RIRE7: preferential insertion into the tandem repeat sequence TrsD in pericentromeric heterochromatin regions of rice chromosomesQ30992421
Transposable element contributions to plant gene and genome evolutionQ33845509
Plant retrotransposonsQ33847714
A phylogenomic study of DNA repair genes, proteins, and processesQ33884321
Perspective: transposable elements, parasitic DNA, and genome evolutionQ34192362
Protein modules that manipulate histone tails for chromatin regulationQ34271581
Evolutionary genomics of chromoviruses in eukaryotesQ34291811
The complex repeats of Dictyostelium discoideumQ35032708
CsRn1, a novel active retrotransposon in a parasitic trematode, Clonorchis sinensis, discloses a new phylogenetic clade of Ty3/gypsy-like LTR retrotransposonsQ38524571
Sequence organization of barley centromeresQ39516316
Ancient lineages of non-LTR retrotransposons in the primitive eukaryote, Giardia lambliaQ42674553
Gypsy-like retrotransposons are widespread in the plant kingdom.Q42681806
Evolution of the Fot1 transposons in the genus Fusarium: discontinuous distribution and epigenetic inactivationQ43937244
Diversity, origin, and distribution of retrotransposons (gypsy and copia) in conifersQ44811763
Sequence variation and genomic amplification of a family of Gypsy-like elements in the oomycete genus PhytophthoraQ46566995
A co-opted gypsy-type LTR-retrotransposon is conserved in the genomes of humans, sheep, mice, and ratsQ47378704
The diversity of retrotransposons in the yeast Cryptococcus neoformansQ47620228
A retrotransposon family from the pufferfish (fugu) Fugu rubripesQ48028739
P433issue1-4
P921main subjectphylogenomicsQ3381973
P304page(s)543-552
P577publication date2005-01-01
P1433published inCytogenetics and Genome ResearchQ1524623
P1476titlePhylogenomic analysis of chromoviruses
P478volume110

Reverse relations

cites work (P2860)
Q36144315A long terminal repeat retrotransposon of Schizosaccharomyces japonicus integrates upstream of RNA pol III transcribed genes
Q79828659Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity
Q34747075Chromodomains direct integration of retrotransposons to heterochromatin.
Q27676663Chromodomains read the arginine code of post-translational targeting
Q88793183DDM1 Represses Noncoding RNA Expression and RNA-Directed DNA Methylation in Heterochromatin
Q27016161Epigenetic virtues of chromodomains
Q28656366Evolution of centromeric retrotransposons in grasses
Q28732854Extensive intron gain in the ancestor of placental mammals
Q28682334Genesis and regulatory wiring of retroelement-derived domesticated genes: a phylogenomic perspective
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Q51750516Nested Ty3-gypsy retrotransposons of a single Beta procumbens centromere contain a putative chromodomain.
Q34168342Plant centromeric retrotransposons: a structural and cytogenetic perspective
Q28756671Relationships of gag-pol diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis
Q60921821Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification
Q34604293Tandem repeats derived from centromeric retrotransposons
Q34876613The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups
Q42112994The centromeric retrotransposons of rice are transcribed and differentially processed by RNA interference
Q36000609Variation in Copy Number of Ty3/Gypsy Centromeric Retrotransposons in the Genomes of Thinopyrum intermedium and Its Diploid Progenitors
Q35491742Viral ancestors of antiviral systems

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