| scholarly article | Q13442814 |
| P50 | author | Jonathan A. Eisen | Q2000017 |
| P2093 | author name string | P C Hanawalt | |
| P2860 | cites work | Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC6803. II. Sequence Determination of the Entire Genome and Assignment of Potential Protein-coding Regions | Q21994433 |
| MED1, a novel human methyl-CpG-binding endonuclease, interacts with DNA mismatch repair protein MLH1 | Q22009114 | ||
| Nothing in Biology Makes Sense except in the Light of Evolution | Q22064567 | ||
| Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1 | Q22065550 | ||
| Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatis | Q22065557 | ||
| Complete Genome Sequence of Treponema pallidum, the Syphilis Spirochete | Q22065559 | ||
| Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii | Q22065564 | ||
| The Minimal Gene Complement of Mycoplasma genitalium | Q22065573 | ||
| Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae | Q22066001 | ||
| Complete Sequence and Gene Organization of the Genome of a Hyper-thermophilic Archaebacterium, Pyrococcus horikoshii OT3 | Q22066073 | ||
| The complete genome sequence of the gastric pathogen Helicobacter pylori | Q22122352 | ||
| Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi | Q22122357 | ||
| The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus | Q22122358 | ||
| The complete genome sequence of the gram-positive bacterium Bacillus subtilis | Q22122360 | ||
| The complete genome of the hyperthermophilic bacterium Aquifex aeolicus | Q22122406 | ||
| Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence | Q22122411 | ||
| The genome sequence of Rickettsia prowazekii and the origin of mitochondria | Q22122428 | ||
| Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima | Q22122435 | ||
| Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori | Q22122443 | ||
| CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice | Q24286950 | ||
| Characterization of a mammalian homolog of the Escherichia coli MutY mismatch repair protein | Q24309547 | ||
| Human blue-light photoreceptor hCRY2 specifically interacts with protein serine/threonine phosphatase 5 and modulates its activity | Q24310175 | ||
| The Werner syndrome protein is a DNA helicase | Q24310486 | ||
| The Bloom's syndrome gene product is a 3'-5' DNA helicase | Q24310523 | ||
| Cloning of a human homolog of the yeast OGG1 gene that is involved in the repair of oxidative DNA damage | Q24311128 | ||
| The 3' to 5' exonuclease activity of Mre 11 facilitates repair of DNA double-strand breaks | Q24311761 | ||
| Cloning and characterization of a functional human homolog of Escherichia coli endonuclease III | Q24311942 | ||
| Isolation and characterization of the human MRE11 homologue | Q24312777 | ||
| The Bloom's syndrome gene product is homologous to RecQ helicases | Q24313440 | ||
| The hMre11/hRad50 protein complex and Nijmegen breakage syndrome: linkage of double-strand break repair to the cellular DNA damage response | Q24316950 | ||
| Nuclear and mitochondrial uracil-DNA glycosylases are generated by alternative splicing and transcription from different positions in the UNG gene | Q24317201 | ||
| Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae | Q24317398 | ||
| Cell cycle regulation of a human cyclin-like gene encoding uracil-DNA glycosylase | Q24319668 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| A phylogenomic study of the MutS family of proteins | Q24548238 | ||
| Conserved domains in DNA repair proteins and evolution of repair systems | Q24548678 | ||
| Thermostable archaeal O6-alkylguanine-DNA alkyltransferases | Q36486201 | ||
| Mechanisms and biological effects of mismatch repair | Q37041860 | ||
| Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. | Q37059958 | ||
| A human nuclear uracil DNA glycosylase is the 37-kDa subunit of glyceraldehyde-3-phosphate dehydrogenase | Q37597621 | ||
| Molecular cloning of AtMMH, an Arabidopsis thaliana ortholog of the Escherichia coli mutM gene, and analysis of functional domains of its product. | Q38331336 | ||
| DNA strand invasion promoted by Escherichia coli RecT protein | Q38336429 | ||
| Recognition and manipulation of branched DNA by the RusA Holliday junction resolvase of Escherichia coli | Q38337262 | ||
| Identification of the structural and functional domains of MutY, an Escherichia coli DNA mismatch repair enzyme | Q38355637 | ||
| Biological effects of high ultraviolet radiation on early earth--a theoretical evaluation | Q38501830 | ||
| Protein family classification based on searching a database of blocks | Q38568514 | ||
| Nucleotide excision repair in the third kingdom | Q39568480 | ||
| Molecular characterization of the Lactococcus lactis LlaKR2I restriction-modification system and effect of an IS982 element positioned between the restriction and modification genes | Q39568519 | ||
| DNA strand exchanges | Q39654093 | ||
| Mitochondrial targeting of human DNA glycosylases for repair of oxidative DNA damage | Q39724151 | ||
| Repair of apurinic/apyrimidinic sites by UV damage endonuclease; a repair protein for UV and oxidative damage | Q39728549 | ||
| DNA Repair in Bacteria and Mammalian Cells | Q39805503 | ||
| The conjugal transfer system of Agrobacterium tumefaciens octopine-type Ti plasmids is closely related to the transfer system of an IncP plasmid and distantly related to Ti plasmid vir genes | Q39842028 | ||
| Resolution of Holliday intermediates in recombination and DNA repair: indirect suppression of ruvA, ruvB, and ruvC mutations. | Q39929442 | ||
| A new ATP-independent DNA endonuclease from Schizosaccharomyces pombe that recognizes cyclobutane pyrimidine dimers and 6-4 photoproducts | Q40411071 | ||
| Structure, Function, and Inhibition of O6-Alkylguanine-DNA Alkyltransferase | Q40473972 | ||
| Structure and function of apurinic/apyrimidinic endonucleases. | Q40475146 | ||
| Structure and function of the DNA repair enzyme exonuclease III from E. coli | Q40707395 | ||
| Processing of Holliday junctions by the Escherichia coli RuvA, RuvB, RuvC and RecG proteins | Q40733598 | ||
| Homologous pairing proteins encoded by the Escherichia coli recE and recT genes | Q40734537 | ||
| Processing of intermediates in recombination and DNA repair: identification of a new endonuclease that specifically cleaves Holliday junctions | Q40794340 | ||
| Nucleotide excision repair I: from E. coli to yeast | Q40828369 | ||
| Nucleotide excision repair. II: From yeast to mammals | Q40828389 | ||
| Mechanism of action of the Escherichia coli UvrABC nuclease: clues to the damage recognition problem | Q40893801 | ||
| Monomerization of pyrimidine dimers in DNA by tryptophan-containing peptides: wavelength dependence | Q72150481 | ||
| Transcription-repair coupling factor is involved in carbon catabolite repression of the Bacillus subtilis hut and gnt operons | Q74422718 | ||
| A new member of the endonuclease III family of DNA repair enzymes that removes methylated purines from DNA | Q77901584 | ||
| Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases | Q24548755 | ||
| Efficient removal of uracil from G.U mispairs by the mismatch-specific thymine DNA glycosylase from HeLa cells | Q24564734 | ||
| Biochemistry of homologous recombination in Escherichia coli | Q24634614 | ||
| The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species | Q24635216 | ||
| Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes | Q24635818 | ||
| Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics | Q24676592 | ||
| Structural basis for the excision repair of alkylation-damaged DNA | Q27733235 | ||
| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| Whole-genome random sequencing and assembly of Haemophilus influenzae Rd | Q27860765 | ||
| Life with 6000 genes | Q27860877 | ||
| Yeast DNA ligase IV mediates non-homologous DNA end joining | Q27931843 | ||
| Cloning and expression in Escherichia coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine | Q27932229 | ||
| PIK-related kinases: DNA repair, recombination, and cell cycle checkpoints | Q27934828 | ||
| AGAINST ALL ODDS:The Survival Strategies of Deinococcus radiodurans | Q28109622 | ||
| Cloning and sequencing a human homolog (hMYH) of the Escherichia coli mutY gene whose function is required for the repair of oxidative DNA damage | Q28114912 | ||
| A relationship betweena DNA-repair/recombination nuclease family and archaeal helicases | Q28141581 | ||
| Gastrogenomic delights: a movable feast | Q28251684 | ||
| Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis | Q28266110 | ||
| Chromosomal location and evolutionary rate variation in enterobacterial genes | Q28272766 | ||
| Pseudogenes as a paradigm of neutral evolution | Q28280635 | ||
| Biochemistry and genetics of eukaryotic mismatch repair | Q28282377 | ||
| Repair of DNA containing O6-alkylguanine | Q28284603 | ||
| SOS response as an adaptive response to DNA damage in prokaryotes | Q28293065 | ||
| A new class of uracil-DNA glycosylases related to human thymine-DNA glycosylase | Q28294063 | ||
| Isolation and characterization of rad51 orthologs from Coprinus cinereus and Lycopersicon esculentum, and phylogenetic analysis of eukaryotic recA homologs | Q28303019 | ||
| Cloning and characterization of a mammalian 8-oxoguanine DNA glycosylase | Q28507243 | ||
| Thermostable uracil-DNA glycosylase from Thermotoga maritima a member of a novel class of DNA repair enzymes | Q28770304 | ||
| Mismatch repair in replication fidelity, genetic recombination, and cancer biology | Q29616483 | ||
| Positional cloning of the Werner's syndrome gene | Q29618393 | ||
| DNA excision repair | Q29618453 | ||
| Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions | Q29618531 | ||
| Homologous genetic recombination: the pieces begin to fall into place | Q33367250 | ||
| The mutY gene: a mutator locus in Escherichia coli that generates G.C----T.A transversions | Q33567384 | ||
| Escherichia coli mutY gene product is required for specific A-G----C.G mismatch correction | Q33680797 | ||
| Ku protein stimulates DNA end joining by mammalian DNA ligases: a direct role for Ku in repair of DNA double-strand breaks | Q33888149 | ||
| Structural basis for MutH activation in E.coli mismatch repair and relationship of MutH to restriction endonucleases | Q33888460 | ||
| Repair of oxidative DNA damage in gram-positive bacteria: the Lactococcus lactis Fpg protein | Q34307661 | ||
| There is substantial agreement among interspecies estimates of DNA repair activity | Q34418470 | ||
| Evolution of high mutation rates in experimental populations of E. coli | Q34429727 | ||
| Structure and function of mammalian DNA ligases | Q34463842 | ||
| Identification of essential residues in Thermus thermophilus DNA ligase | Q34605905 | ||
| DNA damage-dependent recruitment of nucleotide excision repair and transcription proteins to Escherichia coli inner membranes | Q34632776 | ||
| Thermostable repair enzyme for oxidative DNA damage from extremely thermophilic bacterium, Thermus thermophilus HB8. | Q34656935 | ||
| Double strand break repair | Q34743014 | ||
| The SbcCD nuclease of Escherichia coli is a structural maintenance of chromosomes (SMC) family protein that cleaves hairpin DNA | Q34748884 | ||
| Expression of the p48 xeroderma pigmentosum gene is p53-dependent and is involved in global genomic repair | Q34810919 | ||
| The Ribosomal Database project | Q34867777 | ||
| Chlorella virus PBCV-1 encodes a homolog of the bacteriophage T4 UV damage repair gene denV | Q35199931 | ||
| The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based upon their RecA sequences | Q35239471 | ||
| Two recA genes in Myxococcus xanthus | Q35590731 | ||
| Spiroplasma citri virus SpV1-derived cloning vector: deletion formation by illegitimate and homologous recombination in a spiroplasmal host strain which probably lacks a functional recA gene | Q35602010 | ||
| The Streptomyces peucetius drrC gene encodes a UvrA-like protein involved in daunorubicin resistance and production | Q35608040 | ||
| The tra region of the nopaline-type Ti plasmid is a chimera with elements related to the transfer systems of RSF1010, RP4, and F | Q35609800 | ||
| Escherichia coli endonuclease VIII: cloning, sequencing, and overexpression of the nei structural gene and characterization of nei and nei nth mutants | Q35624116 | ||
| Identification of the lactococcal exonuclease/recombinase and its modulation by the putative Chi sequence. | Q35740518 | ||
| MutM, a protein that prevents G C→T A transversions, is formamidopyrimidine-DNA glycosylase | Q35770316 | ||
| recF and recR are required for the resumption of replication at DNA replication forks in Escherichia coli | Q36104718 | ||
| Genetic and molecular analyses of the C-terminal region of the recE gene from the Rac prophage of Escherichia coli K-12 reveal the recT gene | Q36124390 | ||
| mutM, a second mutator locus in Escherichia coli that generates G.C----T.A transversions | Q36223680 | ||
| Evidence for lack of DNA photoreactivating enzyme in humans | Q36296168 | ||
| Menage à trois: double strand break repair, V(D)J recombination and DNA-PK. | Q40925823 | ||
| Homologous recombination proteins in prokaryotes and eukaryotes | Q41000612 | ||
| Nucleotide excision repair: variations associated with cancer development and speciation | Q41041205 | ||
| Counteracting the mutagenic effect of hydrolytic deamination of DNA 5-methylcytosine residues at high temperature: DNA mismatch N-glycosylase Mig.Mth of the thermophilic archaeon Methanobacterium thermoautotrophicum THF | Q41077567 | ||
| Genetic barriers among bacteria. | Q41120565 | ||
| Molecular biology of mycoplasmas | Q41199508 | ||
| The FEN-1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair | Q41396267 | ||
| Archaea and the Origin(s) of DNA Replication Proteins | Q41524701 | ||
| DNA glycosylases in the base excision repair of DNA | Q41532551 | ||
| Nucleotide excision repair in mammalian cells | Q41593250 | ||
| Genetic variability and adaptation to stress. | Q41620371 | ||
| Recombination initiation: easy as A, B, C, D... chi? | Q41651124 | ||
| Mismatch repair: origin of species? | Q41680335 | ||
| Processing of recombination intermediates by the RuvABC proteins | Q41689455 | ||
| The Mfd protein of Bacillus subtilis 168 is involved in both transcription-coupled DNA repair and DNA recombination | Q42627681 | ||
| SGS1, a homologue of the Bloom's and Werner's syndrome genes, is required for maintenance of genome stability in Saccharomyces cerevisiae | Q42967143 | ||
| The repair of ultraviolet light-induced DNA damage in the halophilic archaebacteria, Halobacterium cutirubrum, Halobacterium halobium and Haloferax volcanii | Q43024133 | ||
| Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand | Q46437555 | ||
| Thymineless death in Escherichia coli mutants deficient in the RecF recombination pathway | Q46594672 | ||
| Spontaneous mutators in bacteria: insights into pathways of mutagenesis and repair | Q46617407 | ||
| Antimutagenic role of base-excision repair enzymes upon free radical-induced DNA damage | Q47798756 | ||
| SMC protein complexes and higher-order chromosome dynamics | Q47926694 | ||
| DNA strand exchange proteins: a biochemical and physical comparison. | Q47956058 | ||
| Alternative repair pathways for UV-induced DNA damage | Q47997507 | ||
| The O6-methylguanine-DNA methyltransferase from the hyperthermophilic archaeon Pyrococcus sp. KOD1: a thermostable repair enzyme | Q48012478 | ||
| Chromosome dynamics: the SMC protein family | Q48018554 | ||
| High mutation frequencies among Escherichia coli and Salmonella pathogens | Q48057867 | ||
| Purification and cloning of Micrococcus luteus ultraviolet endonuclease, an N-glycosylase/abasic lyase that proceeds via an imino enzyme-DNA intermediate | Q48069927 | ||
| Structural and functional similarities between the SbcCD proteins of Escherichia coli and the RAD50 and MRE11 (RAD32) recombination and repair proteins of yeast. | Q48070792 | ||
| Cloning and characterization of the recA genes from Mycoplasma pulmonis and M. mycoides subsp. mycoides | Q48085026 | ||
| To be a mutator, or how pathogenic and commensal bacteria can evolve rapidly | Q50132690 | ||
| Interspecies gene exchange in bacteria: the role of SOS and mismatch repair systems in evolution of species. | Q50144938 | ||
| Molecular evolution of the photolyase-blue-light photoreceptor family. | Q50526734 | ||
| Intrastrand parity rules of DNA base composition and usage biases of synonymous codons. | Q52209838 | ||
| DNA mismatch repair and synonymous codon evolution in mammals. | Q52883100 | ||
| DNA repair in Mycobacterium tuberculosis. What have we learnt from the genome sequence? | Q54120570 | ||
| The Escherichia coli ATP-binding cassette (ABC) proteins. | Q54137952 | ||
| Isolation and genetic characterization of a thymineless death-resistant mutant of Escherichia coli K12: identification of a new mutation (recQ1) that blocks the RecF recombination pathway. | Q54484239 | ||
| Ligation of oligonucleotides by pyrimidine dimers—a missing ‘link’ in the origin of life? | Q54514634 | ||
| Roles of the recG gene product of Escherichia coli in recombination repair: effects of the delta recG mutation on cell division and chromosome partition. | Q54567961 | ||
| Structure and function of transcription-repair coupling factor. I. Structural domains and binding properties. | Q54615768 | ||
| Substrate preferences of Vsr DNA mismatch endonuclease and their consequences for the evolution of the Escherichia coli K-12 genome. | Q54619000 | ||
| Involvement of RecE exonuclease and RecT annealing protein in DNA double-strand break repair by homologous recombination. | Q54642506 | ||
| Domainal evolution of a prokaryotic DNA repair protein and its relationship to active-transport proteins. | Q54774466 | ||
| Phylogenies and the Comparative Method | Q56778955 | ||
| Non-orthologous gene displacement | Q56918662 | ||
| Highly Variable Mutation Rates in Commensal and Pathogenic Escherichia coli | Q56944671 | ||
| Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses | Q57079032 | ||
| DNA Repair and the Evolution of Longevity: A Critical Analysis | Q57561173 | ||
| Properties of a Recombinant Human Uracil-DNA Glycosylase from the UNG Gene and Evidence that UNG Encodes the Major Uracil-DNA Glycosylase | Q57942555 | ||
| Characterization ofEscherichia coliEndonuclease VIII | Q62061105 | ||
| Dissection of the Sequence Specificity of the Holliday Junction Endonuclease CCE1† | Q63383891 | ||
| Photomonomerization of pyrimidine dimers by indoles and proteins | Q66889288 | ||
| Photosensitized splitting of thymine dimers in DNA by gene 32 protein from phage T 4 | Q67489436 | ||
| What's old is new: an alternative DNA excision repair pathway | Q70815445 | ||
| Uracil-DNA glycosylase activities in hyperthermophilic micro-organisms | Q71606803 | ||
| Non-orthologous gene displacement | Q71651862 | ||
| The repair of DNA methylation damage in Saccharomyces cerevisiae | Q71824714 | ||
| P433 | issue | 3 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | phylogenomics | Q3381973 |
| P304 | page(s) | 171-213 | |
| P577 | publication date | 1999-12-01 | |
| P1433 | published in | Mutation Research | Q6943732 |
| P1476 | title | A phylogenomic study of DNA repair genes, proteins, and processes | |
| P478 | volume | 435 |
| Q30669971 | A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis |
| Q35740556 | A TetR-like regulator broadly affects the expressions of diverse genes in Mycobacterium smegmatis |
| Q33427806 | A complex cell division machinery was present in the last common ancestor of eukaryotes |
| Q34013660 | A cut above: discovery of an alternative excision repair pathway in bacteria |
| Q37364105 | A genome-wide view of Caenorhabditis elegans base-substitution mutation processes. |
| Q29346699 | A green nonsulfur bacterium, Dehalococcoides ethenogenes, with the LexA binding sequence found in gram-positive organisms |
| Q64056365 | A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria |
| Q37622415 | A non-canonical mismatch repair pathway in prokaryotes |
| Q48292116 | A novel DNA repair enzyme containing RNA recognition, G-patch and specific splicing factor 45-like motifs in the protozoan parasite Toxoplasma gondii |
| Q34579148 | A thermostable endonuclease III homolog from the archaeon Pyrobaculum aerophilum |
| Q35602428 | ATP-stimulated, DNA-mediated redox signaling by XPD, a DNA repair and transcription helicase |
| Q43850790 | An OGG1 orthologue encoding a functional 8-oxoguanine DNA glycosylase/lyase in Arabidopsis thaliana |
| Q58578107 | An RNAi screen in human cell lines reveals conserved DNA damage repair pathways that mitigate formaldehyde sensitivity |
| Q33348624 | An automated phylogenetic tree-based small subunit rRNA taxonomy and alignment pipeline (STAP). |
| Q28485657 | Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance |
| Q22122387 | Analysis of the genome sequence of the flowering plant Arabidopsis thaliana |
| Q33726874 | Antimutator role of DNA glycosylase MutY in pathogenic Neisseria species |
| Q35075343 | Antimutator role of the DNA glycosylase mutY gene in Helicobacter pylori |
| Q33573490 | Apurinic/apyrimidinic endonucleases of Mycobacterium tuberculosis protect against DNA damage but are dispensable for the growth of the pathogen in guinea pigs |
| Q34069787 | Assessing evolutionary relationships among microbes from whole-genome analysis |
| Q24543817 | Associations between inverted repeats and the structural evolution of bacterial genomes |
| Q36623687 | Bacterial populations as perfect gases: genomic integrity and diversification tensions in Helicobacter pylori |
| Q34283911 | Base excision repair in a network of defence and tolerance |
| Q33957142 | Base excision repair of DNA in mammalian cells |
| Q38268043 | Beyond xeroderma pigmentosum: DNA damage and repair in an ecological context. A tribute to James E. Cleaver |
| Q41682058 | Biochemical characterization and novel inhibitor identification of Mycobacterium tuberculosis Endonuclease VIII 2 (Rv3297). |
| Q57139642 | Brouhaha over the other yeast |
| Q99584450 | CRISPR base editing and prime editing: DSB and template-free editing systems for bacteria and plants |
| Q47421848 | CRISPR/Cas9-Based Counterselection Boosts Recombineering Efficiency in Pseudomonas putida. |
| Q35118727 | Cancer and ageing: rival demons? |
| Q35838174 | Catalysis of DNA cleavage and nucleoside triphosphate synthesis by NM23-H2/NDP kinase share an active site that implies a DNA repair function |
| Q85228405 | Characterization of C- and N-terminal domains of Aquifex aeolicus MutL endonuclease: N-terminal domain stimulates the endonuclease activity of C-terminal domain in a zinc-dependent manner |
| Q35162442 | Characterization of a new LexA binding motif in the marine magnetotactic bacterium strain MC-1 |
| Q24678182 | Characterization of the Staphylococcus aureus heat shock, cold shock, stringent, and SOS responses and their effects on log-phase mRNA turnover |
| Q36474333 | Characterization of the Two Mycobacterium tuberculosis recA Promoters |
| Q39504540 | Characterizations of highly expressed genes of four fast-growing bacteria |
| Q58455540 | Cloning and characterization of an ascidian homolog of the human 8-oxoguanine DNA glycosylase (Ogg1) that is involved in the repair of 8-oxo-7,8-dihydroguanine in DNA inCiona intestinalis |
| Q36952320 | Clostridium acetobutylicum 8-oxoguanine DNA glycosylase (Ogg) differs from eukaryotic Oggs with respect to opposite base discrimination |
| Q34679216 | Combining structural and bioinformatics methods for the analysis of functionally important residues in DNA glycosylases |
| Q21092503 | Comparative and evolutionary analysis of the bacterial homologous recombination systems |
| Q34244233 | Controlling the efficiency of excision repair |
| Q31014050 | Correspondence of function and phylogeny of ABC proteins based on an automated analysis of 20 model protein data sets. |
| Q37088805 | Cost of rNTP/dNTP pool imbalance at the replication fork |
| Q27677403 | Crystal structure of a prokaryotic (6-4) photolyase with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore |
| Q41908460 | Crystallization and preliminary X-ray studies of the C-terminal domain ofMycobacterium tuberculosisLexA |
| Q90206568 | DNA Base Excision Repair in Plants: An Unfolding Story With Familiar and Novel Characters |
| Q64979747 | DNA Repair Gene Expression Adjusted by the PCNA Metagene Predicts Survival in Multiple Cancers. |
| Q42369787 | DNA Repair and Photoprotection: Mechanisms of Overcoming Environmental Ultraviolet Radiation Exposure in Halophilic Archaea |
| Q28486985 | DNA alkylation damage as a sensor of nitrosative stress in Mycobacterium tuberculosis |
| Q36194928 | DNA repair and genome maintenance in Bacillus subtilis |
| Q37455209 | DNA repair in Mycobacterium tuberculosis revisited |
| Q38077667 | DNA repair mechanisms in Huntington's disease |
| Q36268064 | DNA repair pathway choice is influenced by the health of Drosophila melanogaster |
| Q34454381 | DNA repair protein biomarkers associated with time to recurrence in triple-negative breast cancer |
| Q22122394 | DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae |
| Q35876946 | DNA toroids: framework for DNA repair in Deinococcus radiodurans and in germinating bacterial spores |
| Q89971038 | Deciphering UV-induced DNA Damage Responses to Prevent and Treat Skin Cancer |
| Q24794233 | Destabilization of tetranucleotide repeats in Haemophilus influenzae mutants lacking RnaseHI or the Klenow domain of PolI |
| Q24794343 | Different patterns of evolution for duplicated DNA repair genes in bacteria of the Xanthomonadales group |
| Q36389617 | Direct reversal of DNA alkylation damage |
| Q40267970 | Dispensability of the [4Fe-4S] cluster in novel homologues of adenine glycosylase MutY. |
| Q39002369 | Does DNA replication direct locus-specific recombination during host immune evasion by antigenic variation in the African trypanosome? |
| Q57272811 | Dual recognition–incision enzymes might be involved in mismatch repair and meiosis |
| Q27936994 | Dynamic compartmentalization of base excision repair proteins in response to nuclear and mitochondrial oxidative stress |
| Q41862949 | Embryonic extracts derived from the nematode Caenorhabditis elegans remove uracil from DNA by the sequential action of uracil-DNA glycosylase and AP (apurinic/apyrimidinic) endonuclease |
| Q38556007 | Emergence and evolutionary analysis of the human DDR network: implications in comparative genomics and downstream analyses |
| Q35131161 | Endonuclease III and endonuclease VIII conditionally targeted into mitochondria enhance mitochondrial DNA repair and cell survival following oxidative stress |
| Q35102721 | Environmental adaptability and stress tolerance of Laribacter hongkongensis: a genome-wide analysis. |
| Q33318450 | Evolution and diversity of clonal bacteria: the paradigm of Mycobacterium tuberculosis |
| Q24642537 | Evolution of mutation rates: phylogenomic analysis of the photolyase/cryptochrome family |
| Q38255035 | Evolution of the methyl directed mismatch repair system in Escherichia coli. |
| Q34325882 | Evolutionary history of the TBP-domain superfamily |
| Q35905616 | ExoMeg1: a new exonuclease from metagenomic library. |
| Q28261787 | Exonuclease 1-dependent and independent mismatch repair |
| Q33307471 | Exploring DNA damage responses in human cells with recombinant adenoviral vectors. |
| Q36048020 | Expression and the Peculiar Enzymatic Behavior of the Trypanosoma cruzi NTH1 DNA Glycosylase |
| Q99548787 | Formation and Recognition of UV-Induced DNA Damage within Genome Complexity |
| Q38351985 | From genotype to phenotype: correlating XRCC1 polymorphisms with mutagen sensitivity |
| Q60916341 | Function and Interactions of ERCC1-XPF in DNA Damage Response |
| Q28484957 | Functional characterization of excision repair and RecA-dependent recombinational DNA repair in Campylobacter jejuni |
| Q37061560 | Genes encoding longevity: from model organisms to humans |
| Q35109602 | Genome Evolution in an Insect Cell: Distinct Features of an Ant-Bacterial Partnership |
| Q30830374 | Genome analysis of DNA repair genes in the alpha proteobacterium Caulobacter crescentus. |
| Q31746728 | Genome data: what do we learn? |
| Q37461159 | Genome dynamics in major bacterial pathogens. |
| Q24548476 | Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics |
| Q22122392 | Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS |
| Q22122524 | Genome sequence of the human malaria parasite Plasmodium falciparum |
| Q22066214 | Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum |
| Q35493927 | Genome-scale phylogenetic function annotation of large and diverse protein families |
| Q42064787 | Genome-wide profiling of 8-oxoguanine reveals its association with spatial positioning in nucleus |
| Q52607320 | Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas. |
| Q35521947 | Genomic and proteomic evidences unravel the UV-resistome of the poly-extremophile Acinetobacter sp. Ver3. |
| Q37269005 | Genomic landscape of DNA repair genes in cancer |
| Q36405499 | Genomics of Aspergillus fumigatus |
| Q29346581 | Heat and DNA damage induction of the LexA-like regulator HdiR from Lactococcus lactis is mediated by RecA and ClpP. |
| Q24554445 | Helicobacter pylori mutants defective in RuvC Holliday junction resolvase display reduced macrophage survival and spontaneous clearance from the murine gastric mucosa |
| Q90240255 | Highly efficient DSB-free base editing for streptomycetes with CRISPR-BEST |
| Q35559727 | Holliday junctions in the eukaryotic nucleus: resolution in sight? |
| Q35604547 | Homologous recombination and gene targeting in plant cells |
| Q44239378 | Host-symbiont stability and fast evolutionary rates in an ant-bacterium association: cospeciation of camponotus species and their endosymbionts, candidatus blochmannia |
| Q31963889 | Human DNA repair genes |
| Q24537479 | Identification of 5-formyluracil DNA glycosylase activity of human hNTH1 protein |
| Q64058785 | Identification of a -Like Gene Encoding an Endonuclease III in |
| Q39735274 | Identification of high excision capacity for 5-hydroxymethyluracil mispaired with guanine in DNA of Escherichia coli MutM, Nei and Nth DNA glycosylases |
| Q33617930 | Identification of proteins of Escherichia coli and Saccharomyces cerevisiae that specifically bind to C/C mismatches in DNA. |
| Q74219203 | Identification of repair enzymes for 5-formyluracil in DNA. Nth, Nei, and MutM proteins of Escherichia coli |
| Q36183157 | In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks |
| Q91809415 | Inactivation of Genes Encoding MutL and MutS Proteins Influences Adhesion and Biofilm Formation by Neisseria gonorrhoeae |
| Q48300492 | Inactivation of genes involved in base excision repair of Corynebacterium glutamicum and survival of the mutants in presence of various mutagens |
| Q33933742 | Influence of DNA repair on mutation spectra in Salmonella |
| Q39123594 | Influence of ice and snow covers on the UV exposure of terrestrial microbial communities: dosimetric studies |
| Q33295154 | Inhibition of staphylococcal biofilm formation by nitrite |
| Q54432649 | Involvement of recF in 254 nm ultraviolet radiation resistance in Deinococcus radiodurans and Escherichia coli. |
| Q35027137 | Kinetic mechanism for the flipping and excision of 1,N(6)-ethenoadenine by AlkA. |
| Q36095368 | Ku heterodimer-independent end joining in Trypanosoma brucei cell extracts relies upon sequence microhomology. |
| Q34667124 | Large genome rearrangements as a primary cause of aging |
| Q89734913 | Lectin-induced oxidative stress in human platelets |
| Q36624120 | Lex marks the spot: the virulent side of SOS and a closer look at the LexA regulon |
| Q34105903 | Localization of UvrA and effect of DNA damage on the chromosome of Bacillus subtilis. |
| Q24791448 | MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences |
| Q30412742 | Mechanisms for Structural Variation in the Human Genome |
| Q36343551 | Meningococcal genome dynamics. |
| Q34344485 | Microbial fitness and genome dynamics. |
| Q34660590 | Mismatch repair causes the dynamic release of an essential DNA polymerase from the replication fork |
| Q53881837 | Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans. |
| Q39741860 | Molecular characterization of the prototrophic Salmonella mutants defective for intraepithelial replication |
| Q41928001 | Multilocus sequence typing of Oenococcus oeni: detection of two subpopulations shaped by intergenic recombination |
| Q48159466 | Mutation exposed: a neutral explanation for extreme base composition of an endosymbiont genome |
| Q24306523 | Mutation in G6PD gene leads to loss of cellular control of protein glutathionylation: mechanism and implication |
| Q36885382 | Mutation rate variation in multicellular eukaryotes: causes and consequences |
| Q34573244 | Mutation rates, spectra and hotspots in mismatch repair-deficient Caenorhabditis elegans |
| Q39646894 | Mutations in polI but not mutSLH destabilize Haemophilus influenzae tetranucleotide repeats |
| Q46274173 | Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria |
| Q28768191 | No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation |
| Q44564992 | Ntg1 and Ntg2 proteins as 5-formyluracil-DNA glycosylases/AP lyases in Saccharomyces cerevisiae |
| Q36226849 | Nucleotide excision repair |
| Q34561510 | O6-alkylguanine-DNA alkyltransferase: role in carcinogenesis and chemotherapy |
| Q48736506 | On key lesions and all that: a tribute to Paul Lohman |
| Q39136933 | Oxidative and nitrosative stress defences of Helicobacter and Campylobacter species that counteract mammalian immunity |
| Q28469302 | Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032 |
| Q41884439 | Phylogenetic molecular function annotation |
| Q43480410 | Phylogenomic analysis of chromoviruses |
| Q35023107 | Phylogenomic analysis of the uracil-DNA glycosylase superfamily |
| Q21563646 | Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements |
| Q37315825 | Plant and fungal Fpg homologs are formamidopyrimidine DNA glycosylases but not 8-oxoguanine DNA glycosylases. |
| Q39419192 | Platelets redox balance assessment: Current evidence and methodological considerations. |
| Q33247807 | Polymorphisms of XRCC1 genes and risk of nasopharyngeal carcinoma in the Cantonese population |
| Q35540743 | Probing for DNA damage with β-hairpins: similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro |
| Q28256131 | Prokaryotic DNA mismatch repair |
| Q24814913 | Protein molecular function prediction by Bayesian phylogenomics |
| Q42932258 | Pseudomonas aeruginosa MutL protein functions in Escherichia coli |
| Q35176033 | Radiation-induced versus endogenous DNA damage: possible effect of inducible protective responses in mitigating endogenous damage |
| Q36339832 | Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. |
| Q28487142 | RecA-independent DNA damage induction of Mycobacterium tuberculosis ruvC despite an appropriately located SOS box |
| Q33269800 | Reductive genome evolution from the mother of Rickettsia |
| Q35132508 | Regulation of nucleotide excision repair in bacteria and mammalian cells. |
| Q39200289 | Repair of oxidatively induced DNA damage by DNA glycosylases: Mechanisms of action, substrate specificities and excision kinetics |
| Q36276354 | Residues in the N-terminal domain of MutL required for mismatch repair in Bacillus subtilis |
| Q43825651 | Richard B. Setlow, a commentary on seminal contributions and scientific controversies |
| Q36422173 | Role of hypermutability in the evolution of the genus Oenococcus |
| Q30612214 | SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories |
| Q83324312 | Sensitivity to Sn2+ of the yeast Saccharomyces cerevisiae depends on general energy metabolism, metal transport, anti-oxidative defences, and DNA repair |
| Q36010829 | Some lessons from Rickettsia genomics |
| Q89869616 | Specificity and mutagenesis bias of the mycobacterial alternative mismatch repair analyzed by mutation accumulation studies |
| Q37398959 | Spontaneous mutational and standing genetic (co)variation at dinucleotide microsatellites in Caenorhabditis briggsae and Caenorhabditis elegans |
| Q30000954 | Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees |
| Q26991866 | Staphylococcal response to oxidative stress |
| Q24534729 | Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate |
| Q42689212 | Structural and functional characterization of the human DNA repair helicase XPD by comparative molecular modeling and site-directed mutagenesis of the bacterial repair protein UvrB. |
| Q35189594 | Structural characterization of the Fpg family of DNA glycosylases |
| Q46111716 | Structural studies of MJ1529, an O6-methylguanine-DNA methyltransferase |
| Q37876374 | Structural, thermodynamic, and kinetic basis for the activities of some nucleic acid repair enzymes |
| Q37957104 | Structure and Function of the Small MutS-Related Domain |
| Q24810392 | Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly |
| Q35026381 | Subpathways of nucleotide excision repair and their regulation |
| Q34342155 | Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1 |
| Q37960389 | Targeting DNA repair and the cell cycle in glioblastoma |
| Q38314435 | The BER necessities: the repair of DNA damage in human-adapted bacterial pathogens. |
| Q54435894 | The DNA-binding domain as a functional indicator: the case of the AraC/XylS family of transcription factors. |
| Q36631422 | The Genomes of Three Uneven Siblings: Footprints of the Lifestyles of Three Trichoderma Species |
| Q39505440 | The LexA protein from Deinococcus radiodurans is not involved in RecA induction following gamma irradiation |
| Q39639221 | The Ssr protein (T1E_1405) from Pseudomonas putida DOT-T1E enables oligonucleotide-based recombineering in platform strain P. putida EM42. |
| Q95839849 | The bromodomain containing protein BRD-9 orchestrates RAD51-RAD54 complex formation and regulates homologous recombination-mediated repair |
| Q28650996 | The case for an early biological origin of DNA |
| Q36936869 | The cellular, developmental and population-genetic determinants of mutation-rate evolution |
| Q50114443 | The closest BLAST hit is often not the nearest neighbor |
| Q22066260 | The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium |
| Q21562676 | The complete genome sequence of Haloferax volcanii DS2, a model archaeon |
| Q43859783 | The effects of microgravity on induced mutation in Escherichia coli and Saccharomyces cerevisiae |
| Q34181411 | The genetic core of the universal ancestor |
| Q37868268 | The genome stability in Corynebacterium species due to lack of the recombinational repair system |
| Q32186925 | The genome-wide transcription response to telomerase deficiency in the thermotolerant yeast Hansenula polymorpha DL-1. |
| Q28586574 | The mouse ortholog of NEIL3 is a functional DNA glycosylase in vitro and in vivo |
| Q28487547 | The oxidative DNA glycosylases of Mycobacterium tuberculosis exhibit different substrate preferences from their Escherichia coli counterparts |
| Q37623265 | The recombination genes addAB are not restricted to gram-positive bacteria: genetic analysis of the recombination initiation enzymes RecF and AddAB in Rhizobium etli. |
| Q33247168 | The relative roles of three DNA repair pathways in preventing Caenorhabditis elegans mutation accumulation |
| Q34220853 | The role of DNA base excision repair in filamentation in Escherichia coli K-12 adhered to epithelial HEp-2 cells. |
| Q40562049 | The role of DNA base excision repair in the pathogenesis of Salmonella enterica serovar Typhimurium |
| Q38335880 | Thermodynamic, kinetic and structural basis for recognition and repair of abasic sites in DNA by apurinic/apyrimidinic endonuclease from human placenta. |
| Q43015153 | Three nth homologs are all required for efficient repair of spontaneous DNA damage in Deinococcus radiodurans |
| Q49194159 | Towards environmental toxicogenomics -- development of a flow-through, high-density DNA hybridization array and its application to ecotoxicity assessment |
| Q29614662 | Transcription-coupled DNA repair: two decades of progress and surprises |
| Q21203696 | UV irradiation induces homologous recombination genes in the model archaeon, Halobacterium sp. NRC-1 |
| Q58738506 | UV-Protective Compounds in Marine Organisms from the Southern Ocean |
| Q27929780 | Uncoupling of 3'-phosphatase and 5'-kinase functions in budding yeast. Characterization of Saccharomyces cerevisiae DNA 3'-phosphatase (TPP1). |
| Q34165028 | Uracil in DNA--occurrence, consequences and repair |
| Q43846779 | Visualization of mismatch repair in bacterial cells |
| Q54527309 | Why are the genomes of endosymbiotic bacteria so stable? |
| Q53205921 | XRCC1 399 Arg-related genotype and allele, but not XRCC1 His107Arg, XRCC1 Trp194Arg, KCNQ2, AT1R, and hOGG1 polymorphisms, are associated with higher susceptibility of endometriosis. |
| Q34013081 | Xeroderma pigmentosum group D 751 polymorphism as a predictive factor in resected gastric cancer treated with chemo-radiotherapy |
| Q59350885 | Yeast XRS2 and human NBN gene: Experimental evidence for homology using codon optimized cDNA |
| Q47811119 | cDNA cloning, expression and functional characterization of an Arabidopsis thaliana homologue of the Escherichia coli DNA repair enzyme endonuclease III. |
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