Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics

scientific article

Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1128/MMBR.65.1.44-79.2001
P3181OpenCitations bibliographic resource ID1621953
P932PMC publication ID99018
P698PubMed publication ID11238985

P50authorAravind L IyerQ4784512
Eugene KooninQ3699974
P2093author name stringY I Wolf
M J Daly
K W Minton
R L Tatusov
K S Makarova
P2860cites workMolecular cloning of the human gene, PNKP, encoding a polynucleotide kinase 3'-phosphatase and evidence for its role in repair of DNA strand breaks caused by oxidative damageQ22003729
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Genome Sequence of an Obligate Intracellular Pathogen of Humans: Chlamydia trachomatisQ22065557
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Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequenceQ22122411
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KEGG: kyoto encyclopedia of genes and genomesQ24515297
SMART: a web-based tool for the study of genetically mobile domainsQ24515301
Binding of the 60-kDa Ro autoantigen to Y RNAs: evidence for recognition in the major groove of a conserved helix.Q24539238
Protection of Escherichia coli cells against the lethal effects of ultraviolet and x irradiation by prior x irradiation: a genetic and physiological studyQ67501638
AP endonuclease and uracil DNA glycosylase activities in Deinocccus radioduransQ67691941
Deinococcus radiodurans UV endonuclease beta DNA incisions do not generate photoreversible thymine residuesQ68315315
The structure of the cell envelope of Micrococcus radiodurans as revealed by metal shadowing and decorationQ70169273
Unusual polar lipids of Micrococcus radiodurans strain SarkQ70789251
[Multiple alignment of biopolymer sequences, based on the search for statistically significant common segments]Q70829278
Isolation and characterization of the plasma membrane and the outer membrane of Deinococcus radiodurans strain SarkQ70969785
Mechanism for Radiation Lethality inM. RadioduransQ71154102
Distinct TPR motifs of Cyc8 are involved in recruiting the Cyc8-Tup1 corepressor complex to differentially regulated promotersQ72130901
Induction of resistance to hydrogen peroxide and radiation in Deinococcus radioduransQ72163058
Lateral genomicsQ73303270
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Outer membrane cytochromes of Shewanella putrefaciens MR-1: spectral analysis, and purification of the 83-kDa c-type cytochromeQ73500908
Protein trans-splicing and cyclization by a naturally split intein from the dnaE gene of Synechocystis species PCC6803Q73586036
Do the integrases of LTR-retrotransposons and class II element transposases have a common ancestor?Q74081101
Escherichia coli HU protein suppresses DNA-gyrase-mediated illegitimate recombination and SOS inductionQ77494472
Plant pathogenesis-related proteins: molecular mechanisms of gene expression and protein functionQ77766168
Structure of a novel phosphoglycolipid from Deinococcus radioduransQ93616433
A repeating 11-mer amino acid motif and plant desiccationQ93876227
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotesQ24548562
Conserved domains in DNA repair proteins and evolution of repair systemsQ24548678
DNA-binding proteins and evolution of transcription regulation in the archaeaQ24548890
Peptidoglycan types of bacterial cell walls and their taxonomic implicationsQ24563299
SMART, a simple modular architecture research tool: identification of signaling domainsQ24597380
An Escherichia coli chromosomal "addiction module" regulated by guanosine [corrected] 3',5'-bispyrophosphate: a model for programmed bacterial cell deathQ24607301
Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiationQ24607590
Transformation in Micrococcus radiodurans and the ultraviolet sensitivity of its transforming DNAQ24633052
Glutamyl-tRNA(Gln) amidotransferase in Deinococcus radiodurans may be confined to asparagine biosynthesisQ24650563
Role of glnB and glnD gene products in regulation of the glnALG operon of Escherichia coliQ24674838
Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccationQ24684819
The metal-ion-free oxidoreductase from Streptomyces aureofaciens has an α/β hydrolase foldQ27729868
NMR solution structure of the pathogenesis-related protein P14aQ27734993
Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinasesQ27749023
Profile hidden Markov modelsQ27860536
A genomic perspective on protein familiesQ27860913
RAD25 is a DNA helicase required for DNA repair and RNA polymerase II transcriptionQ27930190
A model of Cdc25 phosphatase catalytic domain and Cdk-interaction surface based on the presence of a rhodanese homology domainQ27935781
The COG database: a tool for genome-scale analysis of protein functions and evolutionQ27936664
Reconstitution of TFIIH and requirement of its DNA helicase subunits, Rad3 and Rad25, in the incision step of nucleotide excision repairQ27940170
AGAINST ALL ODDS:The Survival Strategies of Deinococcus radioduransQ28109622
Communication modules in bacterial signaling proteinsQ28243451
Targeted mutagenesis by duplication insertion in the radioresistant bacterium Deinococcus radiodurans: radiation sensitivities of catalase (katA) and superoxide dismutase (sodA) mutantsQ28485659
The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymesQ28573848
Regulation of a cytosolic and nuclear O-GlcNAc transferase. Role of the tetratricopeptide repeatsQ28581400
Cloning and mapping of Np95 gene which encodes a novel nuclear protein associated with cell proliferationQ28588925
Schlafen, a new family of growth regulatory genes that affect thymocyte developmentQ28592251
Thermostable uracil-DNA glycosylase from Thermotoga maritima a member of a novel class of DNA repair enzymesQ28770304
Detecting protein function and protein-protein interactions from genome sequencesQ29547473
Using CLUSTAL for multiple sequence alignmentsQ29547794
PAS domains: internal sensors of oxygen, redox potential, and lightQ29615332
Iterated profile searches with PSI-BLAST--a tool for discovery in protein databasesQ29618634
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methodsQ29618948
Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambdaQ29619755
Multiple chromosomes of Azotobacter vinelandiiQ34544999
Statistical modeling and analysis of the LAGLIDADG family of site-specific endonucleases and identification of an intein that encodes a site-specific endonuclease of the HNH familyQ34645548
Comparison of the complete protein sets of worm and yeast: orthology and divergenceQ34670114
Characterization of twenty-six new heat shock genes of Escherichia coliQ34729568
RecQ helicase, in concert with RecA and SSB proteins, initiates and disrupts DNA recombinationQ35196675
Identification and characterization of uvrA, a DNA repair gene of Deinococcus radioduransQ35617346
Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresistance of Deinococcus radioduransQ36101816
Cloning and characterization of DNA damage-inducible promoter regions from Bacillus subtilisQ36131497
A highly conserved repeated chromosomal sequence in the radioresistant bacterium Deinococcus radiodurans SARKQ36142394
Cloning and structural characterization of the mcrA locus of Escherichia coliQ36166295
Function of MglA, a 22-kilodalton protein essential for gliding in Myxococcus xanthusQ36241722
Protein trans-splicing by a split intein encoded in a split DnaE gene of Synechocystis sp. PCC6803Q36253922
Glycolipids from some extreme thermophilic bacteria belonging to the genus Thermus.Q36311436
Characterization of Azotobacter vinelandii deoxyribonucleic acid and folded chromosomesQ36336420
Cloning of the DNA repair genes mtcA, mtcB, uvsC, uvsD, uvsE and the leuB gene from Deinococcus radioduransQ36423485
Morphology and chemistry of cell walls of Micrococcus radioduransQ36567165
Simple method to demonstrate radiation-inducible radiation resistance in microbial cellsQ36664528
Non-globular domains in protein sequences: automated segmentation using complexity measuresQ36726009
Novel ionizing radiation-sensitive mutants of Deinococcus radioduransQ36731124
The Deinococcus radiodurans uvr A gene: identification of mutation sites in two mitomycin-sensitive strains and the first discovery of insertion sequence element from deinobacteriaQ36891176
RADIATION-RESISTANT, PIGMENTED COCCUS ISOLATED FROM HADDOCK TISSUEQ37442478
DNA repair in the extremely radioresistant bacterium Deinococcus radioduransQ38306745
SEALS: a system for easy analysis of lots of sequences.Q38457841
Isolation and characterization of a drought-induced soybean cDNA encoding a D95 family late-embryogenesis-abundant proteinQ39206083
The structure of a periodic cell wall component (HPI-layer of Micrococcus radiodurans)Q39213588
Isolation and characterization of a water-stress-inducible cDNA clone from Solanum chacoense.Q39462456
Three-dimensional structure of the regular surface layer (HPI layer) of Deinococcus radioduransQ39545061
Peptidoglycan fine structure of the radiotolerant bacterium Deinococcus radiodurans SarkQ39547279
ER5, a tomato cDNA encoding an ethylene-responsive LEA-like protein: characterization and expression in response to drought, ABA and woundingQ39623699
Perception of radiation hazardsQ39742292
Molecular analysis of the Rhodococcus sp. strain H1 her gene and characterization of its product, a heroin esterase, expressed in Escherichia coliQ39802185
Structure of peptidoglycan from Thermus thermophilus HB8Q39838126
Interchromosomal recombination in the extremely radioresistant bacterium Deinococcus radioduransQ39838489
Expression of recA in Deinococcus radioduransQ39839698
An alternative pathway of recombination of chromosomal fragments precedes recA-dependent recombination in the radioresistant bacterium Deinococcus radioduransQ39842140
Interplasmidic recombination following irradiation of the radioresistant bacterium Deinococcus radioduransQ39899562
In vivo damage and recA-dependent repair of plasmid and chromosomal DNA in the radiation-resistant bacterium Deinococcus radioduransQ39932283
Nucleotide sequence analysis reveals linked N-acetyl hydrolase, thioesterase, transport, and regulatory genes encoded by the bialaphos biosynthetic gene cluster of Streptomyces hygroscopicusQ39942381
Heterozygosity and instability of amplified chromosomal insertions in the radioresistant bacterium Deinococcus radioduransQ39943350
Duplication insertion of drug resistance determinants in the radioresistant bacterium Deinococcus radioduransQ39953091
Nucleotide sequence of the streptothricin acetyltransferase gene from Streptomyces lavendulae and its expression in heterologous hostsQ39956606
Roles of the uvsC, uvsD, uvsE, and mtcA genes in the two pyrimidine dimer excision repair pathways of Deinococcus radioduransQ39976979
The molecular basis for alternative splicing of the CABP1 transcripts in Dictyostelium discoideumQ40524030
A model for repair of radiation-induced DNA double-strand breaks in the extreme radiophile Deinococcus radioduransQ40547932
A repeating 11-mer amino acid motif and plant desiccationQ40771673
A eukaryotic gene encoding an endonuclease that specifically repairs DNA damaged by ultraviolet lightQ40806821
Transition metals in control of gene expressionQ40830496
Repair of DNA double-strand breaks in Escherichia coli, which requires recA function and the presence of a duplicate genomeQ40840136
Non-specific, general and multiple stress resistance of growth-restricted Bacillus subtilis cells by the expression of the sigmaB regulon.Q40840367
Ribosomal RNA: a key to phylogeny.Q40870307
Repair of ionizing-radiation damage in the radiation resistant bacterium Deinococcus radioduransQ40987612
The resistance of Micrococcus radiodurans to killing and mutation by agents which damage DNAQ41047171
Relationships between DNA repair and transcriptionQ41114776
The BIME family of bacterial highly repetitive sequencesQ41130926
Aminoacyl-tRNA synthesis: divergent routes to a common goalQ41361752
A putative nucleic acid-binding domain in Bloom's and Werner's syndrome helicasesQ41661184
An attempt to pinpoint the phylogenetic introduction of glutaminyl-tRNA synthetase among bacteriaQ41706956
The action of free radicals on Deinococcus radiodurans carotenoidsQ41856948
Osmotically induced intracellular trehalose, but not glycine betaine accumulation promotes desiccation tolerance in Escherichia coliQ42600761
Sequencing, targeted mutagenesis and expression of a recA gene required for the extreme radioresistance of Deinococcus radioduransQ42604725
Modulation of DNA topology by flaR, a new gene from Listeria monocytogenesQ42639377
The nucleotide sequence of a plasmid determinant for resistance to tellurium anionsQ42652800
The genome of molluscum contagiosum virus: analysis and comparison with other poxvirusesQ42659074
The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine)Q29619959
DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary historyQ30559537
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matricesQ30648351
Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transferQ30715471
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.Q30738900
Whole-genome shotgun optical mapping of Deinococcus radioduransQ30767960
Short repeats and IS elements in the extremely radiation-resistant bacterium Deinococcus radiodurans and comparison to other bacterial speciesQ30838825
Functional genomics and enzyme evolution. Homologous and analogous enzymes encoded in microbial genomesQ30845116
A specialized version of the HD hydrolase domain implicated in signal transductionQ30903582
Late embryogenesis-abundant genes encoding proteins with different numbers of hydrophilic repeats are regulated differentially by abscisic acid and osmotic stressQ31157926
Distribution of protein folds in the three superkingdoms of life.Q31917687
The HD domain defines a new superfamily of metal-dependent phosphohydrolasesQ31944351
Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?Q31958293
Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamilyQ31983452
The catalytic domain of the P-type ATPase has the haloacid dehalogenase foldQ32064295
Non-canonical inteins.Q32085842
Nucleoside monophosphate kinases: structure, mechanism, and substrate specificityQ33602275
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstructionQ33611515
Why is Deinococcus radiodurans so resistant to ionizing radiation?Q33724335
Mechanisms for redox control of gene expressionQ33765970
Physiologic determinants of radiation resistance in Deinococcus radioduransQ33786306
The cytoplasmic helical linker domain of receptor histidine kinase and methyl-accepting proteins is common to many prokaryotic signalling proteinsQ33868984
A phylogenomic study of DNA repair genes, proteins, and processesQ33884321
Engineering Deinococcus radiodurans for metal remediation in radioactive mixed waste environmentsQ33885820
Engineering radiation-resistant bacteria for environmental biotechnologyQ33941446
Comparative genome analysis of the pathogenic spirochetes Borrelia burgdorferi and Treponema pallidumQ34003688
The fine structure of micrococcus radioduransQ34054322
Ribonucleotide reductasesQ34067559
Four proteins synthesized in response to deoxyribonucleic acid damage in Micrococcus radiodurans.Q34110169
Multiplicity of genome equivalents in the radiation-resistant bacterium Micrococcus radioduransQ34262169
Computer analysis of bacterial haloacid dehalogenases defines a large superfamily of hydrolases with diverse specificity. Application of an iterative approach to database searchQ34326151
Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs.Q34442949
The GAF domain: an evolutionary link between diverse phototransducing proteins.Q34452640
A putative multisubunit Na+/H+ antiporter from Staphylococcus aureus.Q34483330
Cloning and sequencing of a chromosomal fragment from Clostridium acetobutylicum strain ABKn8 conferring chemical-damaging agents and UV resistance to E. coli recA strainsQ42685255
Dust-borne bacteria in animal sheds, schools and children's day care centresQ43026394
Identification of a virus intein and a possible variation in the protein-splicing reactionQ43419992
UV-repair and mutagenesis in Azotobacter vinelandii. I. Repair of UV-induced damagesQ43492628
Apical secretion and association of the Drosophila yellow gene product with developing larval cuticle structures during embryogenesisQ44201768
The envelope of Micrococcus radiodurans: isolation, purification, and preliminary analysis of the wall layersQ45091827
Partial complementation of the UV sensitivity of Deinococcus radiodurans excision repair mutants by the cloned denV gene of bacteriophage T4Q45108873
Identification and initial characterisation of a pyrimidine dimer UV endonuclease (UV endonuclease beta) from Deinococcus radiodurans; a DNA-repair enzyme that requires manganese ionsQ45260430
Red-Pigmented Micrococci: A Basis for TaxonomyQ45301705
Polar Lipid Profiles of the Genus DeinococcusQ45310968
A Radiation-Resistant Rod-Shaped Bacterium, Deinobacter grandis gen. nov., sp. nov., with Peptidoglycan Containing OrnithineQ45311228
Phylogenetic Diversity of the Deinococci as Determined by 16S Ribosomal DNA Sequence ComparisonQ45312776
Studies on a radio-resistant coccus isolated from Bombay duck (Harpodon nehereus).Q47748988
Molecular analysis of the Deinococcus radiodurans recA locus and identification of a mutation site in a DNA repair-deficient mutant, rec30.Q47899206
Characterization of Five Abscisic Acid-Responsive cDNA Clones Isolated from the Desiccation-Tolerant Plant Craterostigma plantagineum and Their Relationship to Other Water-Stress GenesQ47920663
The family of major royal jelly proteins and its evolutionQ47939325
A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences insaltstressresponseQ48048719
Cloning and sequencing of trehalose synthase gene from Thermus aquaticus ATCC33923.Q48053938
Cloning and sequencing of trehalose biosynthesis genes from Rhizobium sp. M-11.Q48065097
Unusual sequences of group 3 LEA mRNA inducible by maturation or drying in soybean seedsQ48069524
Another Lea B19 gene (Group1 Lea) from barley containing a single 20 amino acid hydrophilic motifQ48082072
Unusual sequence of group 3 LEA (II) mRNA inducible by dehydration stress in wheatQ48130268
Cotton Lea5 and Lea14 encode atypical late embryogenesis-abundant proteinsQ48135771
Promoter probe and shuttle plasmids for Deinococcus radioduransQ48149874
Engineering a recombinant Deinococcus radiodurans for organopollutant degradation in radioactive mixed waste environments.Q51496020
SCOP: a Structural Classification of Proteins database.Q52229910
Significant dispersed recurrent DNA sequences in the Escherichia coli genome. Several new groups.Q52400704
Occurrence of flavin-containing monooxygenases in non-mammalian eukaryotic organisms.Q52568274
Ethylene-regulated gene expression in tomato fruit: characterization of novel ethylene-responsive and ripening-related genes isolated by differential displayQ52914026
Accurate repair of ultraviolet-induced damage in Micrococcus radiodurans.Q53760983
[New Micrococcus radioresistant red pigment, isolated from Lama glama feces, and its use as microbiological indicator of radiosterilization]Q53817832
The Release of a Deoxyribonucleic Acid Fragment after X-irradiation ofMicrococcus RadioduransQ54041231
Gene expression in Deinococcus radiodurans.Q54303082
Shuttle plasmids constructed by the transformation of an Escherichia coli cloning vector into two Deinococcus radiodurans plasmids.Q54345434
Isolation and properties of strains of Micrococcus (Deinococcus) radiodurans unable to excise ultraviolet light-induced pyrimidine dimers from DNA: evidence for two excision pathways.Q54493455
Induction of mutation in Micrococcus radiodurans by N-methyl-N'-nitro-N-nitrosoguanidine.Q54500802
Radiation-resistant micro-organisms isolated from textiles.Q54529916
Radiation-resistance of micro-organisms from air in clean premises.Q54529919
A study by freeze-etching of the fine structure of Micrococcus radiodurans.Q54579832
DNA polymerase beta: pre-steady-state kinetic analysis and roles of arginine-283 in catalysis and fidelity.Q54587220
Changes in cellular proteins of Deinococcus radiodurans following gamma-irradiation.Q54589174
Purification and domain-mapping of mammalian DNA polymerase beta.Q54619633
DNA deoxyribophosphodiesterase and an activity that cleaves DNA containing thymine glycol adducts in Deinococcus radiodurans.Q54633825
The resistance of Micrococcus radiodurans to ultraviolet radiation. 3. A repair mechanism.Q54706000
THE RESISTANCE OF MICROCOCCUS RADIODURANS TO ULTRAVIOLET RADIATION. I. ULTRAVIOLET-INDUCED LESIONS IN THE CELL'S DNA.Q54715137
Genome Multiplicity and Radiation Resistance in Micrococcus radiodurans1Q55063096
Recombination between a resident plasmid and the chromosome following irradiation of the radioresistant bacterium Deinococcus radiodurans.Q55066961
Genome evolutionQ56918442
Evidence for massive gene exchange between archaeal and bacterial hyperthermophilesQ57263144
Repair of X-Ray Damage to the Deoxyribonucleic Acid in Micrococcus radioduransQ59079163
First steps from a two-dimensional protein index towards a response-regulation map forBacillus subtilisQ59566924
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectDeinococcus radioduransQ386827
comparative genomicsQ1147112
P304page(s)44-79
P577publication date2001-03-01
P1433published inMicrobiology and Molecular Biology ReviewsQ6839270
P1476titleGenome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics
P478volume65

Reverse relations

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Q39701319Detection of viable but non cultivable Escherichia coli after UV irradiation using a lytic Qbeta phage
Q46950672Differential proteomics of dehydration and rehydration in bryophytes: evidence towards a common desiccation tolerance mechanism
Q64390438Differential radio-tolerance of nutrition-induced morphotypes of Deinococcus radiodurans R1
Q30928322Distinctive protein signatures provide molecular markers and evidence for the monophyletic nature of the deinococcus-thermus phylum
Q33787012Diversity in transcripts and translational pattern of stress proteins in marine extremophiles
Q39619399Diversity of ionizing radiation-resistant bacteria obtained from the Taklimakan Desert
Q28553652Doping Polypyrrole Films with 4-N-Pentylphenylboronic Acid to Enhance Affinity towards Bacteria and Dopamine
Q46682116Dps from Deinococcus radiodurans: oligomeric forms of Dps1 with distinct cellular functions and Dps2 involved in metal storage.
Q42772727DqsIR quorum sensing-mediated gene regulation of the extremophilic bacterium Deinococcus radiodurans in response to oxidative stress.
Q35536196Dr-FtsA, an actin homologue in Deinococcus radiodurans differentially affects Dr-FtsZ and Ec-FtsZ functions in vitro
Q46798975DrRRA: a novel response regulator essential for the extreme radioresistance of Deinococcus radiodurans.
Q39106532DrwH, a novel WHy domain-containing hydrophobic LEA5C protein from Deinococcus radiodurans, protects enzymatic activity under oxidative stress.
Q82904892Effect of relative humidity on Deinococcus radiodurans' resistance to prolonged desiccation, heat, ionizing, germicidal, and environmentally relevant UV radiation
Q41892546Elevated Rate of Genome Rearrangements in Radiation-Resistant Bacteria
Q24669958Engineering Deinococcus geothermalis for bioremediation of high-temperature radioactive waste environments
Q38387047Engineering Synthetic Multistress Tolerance in Escherichia coli by Using a Deinococcal Response Regulator, DR1558.
Q35739851Environmental Pressure May Change the Composition Protein Disorder in Prokaryotes
Q33294477Enzymes involved in DNA ligation and end-healing in the radioresistant bacterium Deinococcus radiodurans
Q37131488Essentiality of threonylcarbamoyladenosine (t(6)A), a universal tRNA modification, in bacteria
Q44187337Eubacterial phylogeny based on translational apparatus proteins
Q43068618Evaluation of the role of enzymatic and nonenzymatic antioxidant systems in the radiation resistance of Deinococcus
Q52699559Evolution of double MutT/Nudix domain-containing proteins: similar domain architectures from independent gene duplication-fusion events.
Q35113829Evolution of the Yellow/Major Royal Jelly Protein family and the emergence of social behavior in honey bees
Q43022823Experimental and statistical analysis of nutritional requirements for the growth of the extremophile Deinococcus geothermalis DSM 11300.
Q35112772Expression and mutational analysis of DinB-like protein DR0053 in Deinococcus radiodurans
Q43058500Expression, purification and crystallization of two endonuclease III enzymes from Deinococcus radiodurans
Q28485665Extracellular dGMP enhances Deinococcus radiodurans tolerance to oxidative stress
Q22066338Extreme polyploidy in a large bacterium
Q55307214Extremophilic Microfactories: Applications in Metal and Radionuclide Bioremediation.
Q30531647Firm but slippery attachment of Deinococcus geothermalis
Q34504491Forged Under the Sun: Life and Art of Extremophiles from Andean Lakes.
Q42533004Functional analysis of helicase and three tandem HRDC domains of RecQ in Deinococcus radiodurans
Q39504564Functional and evolutionary relationship between arginine biosynthesis and prokaryotic lysine biosynthesis through alpha-aminoadipate
Q64991602Functional assessment of hydrophilic domains of late embryogenesis abundant proteins from distant organisms.
Q41584059Functional characterization of the role of the chromosome I partitioning system in genome segregation in Deinococcus radiodurans
Q45513539Functional comparison of Deinococcus radiodurans Dps proteins suggests distinct in vivo roles
Q34046426Gamma radiation-induced proteome of Deinococcus radiodurans primarily targets DNA repair and oxidative stress alleviation
Q35877517Gene Expression Analysis of Four Radiation-resistant Bacteria
Q34305285Genetic evidence that the uvsE gene product of Deinococcus radiodurans R1 is a UV damage endonuclease
Q42582509Genome Signature Difference between Deinococcus radiodurans and Thermus thermophilus
Q30830374Genome analysis of DNA repair genes in the alpha proteobacterium Caulobacter crescentus.
Q21561015Genome sequence and transcriptome analysis of the radioresistant bacterium Deinococcus gobiensis: insights into the extreme environmental adaptations
Q41432433Genome-wide study predicts promoter-G4 DNA motifs regulate selective functions in bacteria: radioresistance of D. radiodurans involves G4 DNA-mediated regulation
Q41886211Genome-wide transcriptome and antioxidant analyses on gamma-irradiated phases of deinococcus radiodurans R1.
Q24814573Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns".
Q35521947Genomic and proteomic evidences unravel the UV-resistome of the poly-extremophile Acinetobacter sp. Ver3.
Q34317883Genomic variability of O islands encoding tellurite resistance in enterohemorrhagic Escherichia coli O157:H7 isolates
Q24653367Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
Q24535537Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags
Q46167307High cell density production of Deinococcus radiodurans under optimized conditions
Q50587813High-coverage proteomics reveals methionine auxotrophy in Deinococcus radiodurans.
Q42014771High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.
Q28213804HucR, a novel uric acid-responsive member of the MarR family of transcriptional regulators from Deinococcus radiodurans
Q24537742Identification and characterization of a novel bacterial sulfite oxidase with no heme binding domain from Deinococcus radiodurans
Q53447018Identification of a DNA processing complex from Deinococcus radiodurans.
Q35605357Identification of new genes contributing to the extreme radioresistance of Deinococcus radiodurans using a Tn5-based transposon mutant library
Q40832509Implications of mutation of organelle genomes for organelle function and evolution
Q43031332Imposed Environmental Stresses Facilitate Cell-Free Nanoparticle Formation by Deinococcus radiodurans
Q36380481In vivo and in vitro characterization of DdrC, a DNA damage response protein in Deinococcus radiodurans bacterium
Q40418290In wild tobacco, Nicotiana attenuata, variation among bacterial communities of isogenic plants is mainly shaped by the local soil microbiota independently of the plants' capacity to produce jasmonic acid
Q44683473Inducible expression, enzymatic activity, and origin of higher plant homologues of bacterial RelA/SpoT stress proteins in Nicotiana tabacum
Q34303338Integrated transcriptomic and proteomic analysis of the bile stress response in a centenarian-originated probiotic Bifidobacterium longum BBMN68
Q42906095Interaction of double-stranded DNA with polymerized PprA protein from Deinococcus radiodurans
Q53540815Involvement of a periplasmic protein kinase in DNA strand break repair and homologous recombination in Escherichia coli.
Q38609039Involvement of a protein kinase activity inducer in DNA double strand break repair and radioresistance of Deinococcus radiodurans
Q33525568Irradiation-induced Deinococcus radiodurans genome fragmentation triggers transposition of a single resident insertion sequence
Q24796762LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles
Q35052401LUD, a new protein domain associated with lactate utilization
Q54446661Lesion bypass activity of DNA polymerase A from the extremely radioresistant organism Deinococcus radiodurans.
Q33183459Life and death of dried prokaryotes
Q46854900Limited concentration of RecA delays DNA double-strand break repair in Deinococcus radiodurans R1.
Q38530942Lineage-specific variations in the trigger loop modulate RNA proofreading by bacterial RNA polymerases.
Q38068239Manganese complexes: diverse metabolic routes to oxidative stress resistance in prokaryotes and yeast
Q35170543Metagenomics of petroleum muck: revealing microbial diversity and depicting microbial syntrophy
Q37072433Methionine in proteins defends against oxidative stress
Q61448115Microbial Biomarker Transition in High-Altitude Sinter Mounds From (Chile) Through Different Stages of Hydrothermal Activity
Q38672865Microbial Communities in Different Tissues of Atta sexdens rubropilosa Leaf-cutting Ants
Q34005338Microbial extremophiles at the limits of life
Q39406475Microbial radiation-resistance mechanisms
Q59008428Microbiology: Resurrecting a broken genome
Q59009105Microbiology: Resurrecting a broken genome
Q59426106Mini-Review: Probing the limits of extremophilic life in extraterrestrial environment-simulated experiments
Q53881837Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans.
Q33231429Molecular analysis of the bacterial microbiota in the human stomach
Q33394554Molecular bacterial diversity and distribution in waste from a steel plant
Q33553542Molecular cloning and functional analysis of the MutY homolog of Deinococcus radiodurans
Q34153525New technology may reveal mechanisms of radiation resistance in Deinococcus radiodurans
Q51742882Novel Sequence Features of DNA Repair Genes/Proteins from Deinococcus Species Implicated in Protection from Oxidatively Generated Damage.
Q93386227Novel functions of peroxiredoxin Q from Deinococcus radiodurans R1 as a peroxidase and a molecular chaperone
Q94561421Nucleoid Associated Proteins: The Small Organizers That Help to Cope With Stress
Q28649710Out of the dark: transitional subsurface-to-surface microbial diversity in a terrestrial serpentinizing seep (Manleluag, Pangasinan, the Philippines)
Q30499016Oxidative stress resistance in Deinococcus radiodurans
Q47795341ParA encoded on chromosome II of Deinococcus radiodurans binds to nucleoid and inhibits cell division in Escherichia coli
Q30394741Phylogeny vs genome reshuffling: horizontal gene transfer
Q34412924Physiological responses of the halophilic archaeon Halobacterium sp. strain NRC1 to desiccation and gamma irradiation
Q52595130Pleiotropic effects of RecQ in Deinococcus radiodurans.
Q52653405PprA, a pleiotropic protein for radioresistance, works through DNA gyrase and shows cellular dynamics during postirradiation recovery in Deinococcus radiodurans.
Q52550949PprI: a general switch responsible for extreme radioresistance of Deinococcus radiodurans.
Q45015541Predicted Cold Shock Proteins from the Extremophilic Bacterium Deinococcus maricopensis and Related Deinococcus Species
Q22064352Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids
Q34357096Production of the 14C-labeled insecticidal protein Cry1Ab for soil metabolic studies using a recombinant Escherichia coli in small-scale batch fermentations.
Q49163792Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149.
Q34069527Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans
Q21145887Protein oxidation implicated as the primary determinant of bacterial radioresistance
Q39011259Protein oxidation: key to bacterial desiccation resistance?
Q39741315Protein splicing of the Deinococcus radiodurans strain R1 Snf2 intein
Q47128046Proteometabolomic response of Deinococcus radiodurans exposed to UVC and vacuum conditions: Initial studies prior to the Tanpopo space mission.
Q64081235Proteomic and Metabolomic Profiling of Recovering After Exposure to Simulated Low Earth Orbit Vacuum Conditions
Q43015531Purification and some properties of superoxide dismutase from Deinococcus radiophilus, the UV-resistant bacterium
Q30362416Purification, crystallization and phase determination of the DR1998 haem b catalase from Deinococcus radiodurans.
Q53146495Pyrroloquinoline quinone and a quinoprotein kinase support γ-radiation resistance in Deinococcus radiodurans and regulate gene expression.
Q36106467RNA damage in biological conflicts and the diversity of responding RNA repair systems
Q33556640RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti
Q46258936RNA-Binding Domain is Necessary for PprM Function in Response to the Extreme Environmental Stress in Deinococcus radiodurans
Q38687889Radiation resistance in thermophiles: mechanisms and applications
Q44235703Radiation response in Deinococcus deserti: IrrE is a metalloprotease that cleaves repressor protein DdrO.
Q35937951Radiation-Resistant Micrococcus luteus SC1204 and Its Proteomics Change Upon Gamma Irradiation
Q28265761Reassembly of shattered chromosomes in Deinococcus radiodurans
Q34306302RecA Protein from the extremely radioresistant bacterium Deinococcus radiodurans: expression, purification, and characterization
Q36540412RecO is essential for DNA damage repair in Deinococcus radiodurans
Q41842518RecR-mediated modulation of RecF dimer specificity for single- and double-stranded DNA.
Q38514830Recent progress in understanding the molecular mechanisms of radioresistance in Deinococcus bacteria
Q53198105Recombinant D. radiodurans cells for bioremediation of heavy metals from acidic/neutral aqueous wastes.
Q64387300Recombinational DNA repair in a cellular context: a search for the homology search
Q42127516Remarkable sequence signatures in archaeal genomes
Q33964219Repression of recA induction by RecX is independent of the RecA protein in Deinococcus radiodurans
Q46663864Resistance of Deinococcus radiodurans to mutagenesis is facilitated by pentose phosphate pathway in the mutS1 mutant background
Q38500842Ring-like nucleoids and DNA repair through error-free nonhomologous end joining in Deinococcus radiodurans
Q52656456Sec pathway influences the growth of Deinococcus radiodurans.
Q34087166Self-aligned wet-cell for hydrated microbiology observation in TEM.
Q92437198Sensitivity of Deinococcus grandis rodZ deletion mutant to calcium ions results in enhanced spheroplast size
Q46813200Sensitivity to polychromatic UV-radiation of strains of Deinococcus radiodurans differing in their DNA repair capacity
Q43358567Shewanella--the environmentally versatile genome
Q35827360Single Strand Annealing Plays a Major Role in RecA-Independent Recombination between Repeated Sequences in the Radioresistant Deinococcus radiodurans Bacterium.
Q91983724Single-molecule observation of ATP-independent SSB displacement by RecO in Deinococcus radiodurans
Q21089995Small-Molecule Antioxidant Proteome-Shields in Deinococcus radiodurans
Q36476712Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein
Q43233352Soybean PM2 protein (LEA3) confers the tolerance of Escherichia coli and stabilization of enzyme activity under diverse stresses
Q24794219Species-specific protein sequence and fold optimizations
Q38973746Specificity of root microbiomes in native-grown Nicotiana attenuata and plant responses to UVB increase Deinococcus colonization
Q41931433Stratified Bacterial Diversity along Physico-chemical Gradients in High-Altitude Modern Stromatolites
Q27670716Structural and Functional Insights into DR2231 Protein, the MazG-like Nucleoside Triphosphate Pyrophosphohydrolase from Deinococcus radiodurans
Q64086395Structural and biochemical evidence supporting poly ADP-ribosylation in the bacterium Deinococcus radiodurans
Q35583484Structural aspects of DNA repair: the role of restricted diffusion
Q27643663Structural conservation of RecF and Rad50: implications for DNA recognition and RecF function
Q89766143Structural insights into the main S-layer unit of Deinococcus radiodurans reveal a massive protein complex with porin-like features
Q27678980Structure and Cellular Dynamics of Deinococcus radiodurans Single-stranded DNA (ssDNA)-binding Protein (SSB)-DNA Complexes
Q27641802Structure and mechanism of MT-ADPRase, a nudix hydrolase from Mycobacterium tuberculosis
Q40442255Structure determination of uracil-DNA N-glycosylase from Deinococcus radiodurans in complex with DNA.
Q41909613Structure of the manganese superoxide dismutase from Deinococcus radiodurans in two crystal forms.
Q27690818Structure of the monofunctional heme catalase DR1998 from Deinococcus radiodurans
Q27650786Structure ofDeinococcus radioduranstunicamycin-resistance protein (TmrD), a phosphotransferase
Q27681054Structure-function studies of an unusual 3-methyladenine DNA glycosylase II (AlkA) from Deinococcus radiodurans
Q57376764Systems-Based Analysis of Modified tRNA Bases
Q27661646TM0486 from the Hyperthermophilic Anaerobe Thermotoga maritima is a Thiamin-binding Protein Involved in Response of the Cell to Oxidative Conditions
Q33922934Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing
Q55122132The BON domain: a putative membrane-binding domain
Q21284294The COG database: an updated version includes eukaryotes
Q36257713The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline
Q52583273The ClpPX protease is required for radioresistance and regulates cell division after gamma-irradiation in Deinococcus radiodurans.
Q43027251The Deinococcus radiodurans SMC protein is dispensable for cell viability yet plays a role in DNA folding
Q30717114The IrrE protein of Deinococcus radiodurans R1 is a novel regulator of recA expression
Q39505440The LexA protein from Deinococcus radiodurans is not involved in RecA induction following gamma irradiation
Q92621373The Polycyclic Aromatic Hydrocarbon (PAH) degradation activities and genome analysis of a novel strain Stenotrophomonas sp. Pemsol isolated from Mexico
Q35493943The Proteome Folding Project: proteome-scale prediction of structure and function
Q33959536The RecA proteins of Deinococcus radiodurans and Escherichia coli promote DNA strand exchange via inverse pathways
Q52360941The SbcC and SbcD homologs of the cyanobacterium Anabaena sp. strain PCC7120 (Alr3988 and All4463) contribute independently to DNA repair.
Q47115917The Sit-and-Wait Hypothesis in Bacterial Pathogens: A Theoretical Study of Durability and Virulence
Q22066371The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens
Q46751737The crystal structure of mismatch-specific uracil-DNA glycosylase (MUG) from Deinococcus radiodurans reveals a novel catalytic residue and broad substrate specificity.
Q93090065The diversity and commonalities of the radiation-resistance mechanisms of Deinococcus and its up-to-date applications
Q22122105The genome sequence of the extreme thermophile Thermus thermophilus
Q38308109The key residue for SSB-RecO interaction is dispensable for Deinococcus radiodurans DNA repair in vivo.
Q21283900The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis
Q28740893The self-organizing fractal theory as a universal discovery method: the phenomenon of life
Q24794165The single-stranded DNA-binding protein of Deinococcus radiodurans
Q42623791The structure of the organic hydroperoxide resistance protein from Deinococcus radiodurans. Do conformational changes facilitate recycling of the redox disulfide?
Q33708659The tree and net components of prokaryote evolution
Q27658312Thioredoxin System from Deinococcus radiodurans
Q43015153Three nth homologs are all required for efficient repair of spontaneous DNA damage in Deinococcus radiodurans
Q46626618Topoisomerase IB of Deinococcus radiodurans resolves guanine quadruplex DNA structures in vitro
Q35075071Transcriptional analysis of Deinococcus radiodurans reveals novel small RNAs that are differentially expressed under ionizing radiation
Q34303376Transcriptome analysis applied to survival of Shewanella oneidensis MR-1 exposed to ionizing radiation
Q34922870Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation
Q48557003Transition from natively unfolded to folded state induced by desiccation in an anhydrobiotic nematode protein
Q21203696UV irradiation induces homologous recombination genes in the model archaeon, Halobacterium sp. NRC-1
Q35701744Unraveling adaptation of Pontibacter korlensis to radiation and infertility in desert through complete genome and comparative transcriptomic analysis
Q27697893X-ray radiation induces deprotonation of the bilin chromophore in crystalline D. radiodurans phytochrome

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