| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1043482380 |
| P356 | DOI | 10.1186/1471-2148-5-57 |
| P8608 | Fatcat ID | release_w4esdeogzfe25b3jvzgddiqnjm |
| P932 | PMC publication ID | 1274311 |
| P698 | PubMed publication ID | 16242020 |
| P5875 | ResearchGate publication ID | 7524586 |
| P50 | author | Eugene Koonin | Q3699974 |
| Kira Makarova | Q63964276 | ||
| Min Zhai | Q90407020 | ||
| Elena K Gaidamakova | Q114411550 | ||
| Marina V Omelchenko | Q114411557 | ||
| Yuri Wolf | Q59640168 | ||
| Vera A Matrosova | Q61313077 | ||
| P2093 | author name string | Alexander Vasilenko | |
| Michael J Daly | |||
| P2860 | cites work | New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system | Q21194875 |
| Genome trees constructed using five different approaches suggest new major bacterial clades | Q21284133 | ||
| MUSCLE: a multiple sequence alignment method with reduced time and space complexity | Q21284290 | ||
| The COG database: an updated version includes eukaryotes | Q21284294 | ||
| Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1 | Q22065550 | ||
| The genome sequence of the extreme thermophile Thermus thermophilus | Q22122105 | ||
| Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima | Q22122435 | ||
| SARPs: a family of secreted apoptosis-related proteins | Q24311564 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| On the maximum likelihood method in molecular phylogenetics | Q67989380 | ||
| The scavenging of superoxide radical by manganous complexes: In vitro | Q72935047 | ||
| Bacteriophytochromes: phytochrome-like photoreceptors from nonphotosynthetic eubacteria | Q73316575 | ||
| A hot story from comparative genomics: reverse gyrase is the only hyperthermophile-specific protein | Q74238221 | ||
| Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics | Q24548476 | ||
| Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes | Q24548562 | ||
| The COG database: new developments in phylogenetic classification of proteins from complete genomes | Q24605347 | ||
| Ro ribonucleoproteins contribute to the resistance of Deinococcus radiodurans to ultraviolet irradiation | Q24607590 | ||
| The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species | Q24635216 | ||
| Postsegregational killing does not increase plasmid stability but acts to mediate the exclusion of competing plasmids | Q24679732 | ||
| Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation | Q24684819 | ||
| CDD: a Conserved Domain Database for protein classification | Q24795306 | ||
| Comparative genomics of Archaea: how much have we learned in six years, and what's next? | Q24796655 | ||
| Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ | Q24797089 | ||
| Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes | Q24797719 | ||
| Preserving genome integrity: the DdrA protein of Deinococcus radiodurans R1 | Q24804675 | ||
| Genomic and proteomic adaptations to growth at high temperature | Q24809334 | ||
| Manganese superoxide dismutase from Thermus thermophilus. A structural model refined at 1.8 A resolution | Q27660467 | ||
| The crystal structure of Dps, a ferritin homolog that binds and protects DNA | Q27749085 | ||
| AGAINST ALL ODDS:The Survival Strategies of Deinococcus radiodurans | Q28109622 | ||
| Transproteomic evidence of a loop-deletion mechanism for enhancing protein thermostability | Q28138509 | ||
| Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability | Q28203641 | ||
| MOSC domains: ancient, predicted sulfur-carrier domains, present in diverse metal-sulfur cluster biosynthesis proteins including Molybdenum cofactor sulfurases | Q28206023 | ||
| Analysis of Deinococcus radiodurans's transcriptional response to ionizing radiation and desiccation reveals novel proteins that contribute to extreme radioresistance | Q28485657 | ||
| PprA: a novel protein from Deinococcus radiodurans that stimulates DNA ligation | Q28485660 | ||
| Pathways of Oxidative Damage | Q29615094 | ||
| Identification of genes that are associated with DNA repeats in prokaryotes | Q29615790 | ||
| Horizontal gene transfer in prokaryotes: quantification and classification | Q29616017 | ||
| Genome phylogeny based on gene content | Q29617415 | ||
| Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods | Q29618948 | ||
| Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima | Q30002350 | ||
| Horizontal transfer of archaeal genes into the deinococcaceae: detection by molecular and computer-based approaches | Q30660162 | ||
| A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis | Q30669971 | ||
| Kineococcus radiotolerans sp. nov., a radiation-resistant, gram-positive bacterium | Q30697055 | ||
| The IrrE protein of Deinococcus radiodurans R1 is a novel regulator of recA expression | Q30717114 | ||
| Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. | Q30738900 | ||
| Deinococcus frigens sp. nov., Deinococcus saxicola sp. nov., and Deinococcus marmoris sp. nov., low temperature and draught-tolerating, UV-resistant bacteria from continental Antarctica | Q30979013 | ||
| The role of lineage-specific gene family expansion in the evolution of eukaryotes | Q31093428 | ||
| Phylogenetic Diversity of the Deinococci as Determined by 16S Ribosomal DNA Sequence Comparison | Q45312776 | ||
| Characterization of Five Abscisic Acid-Responsive cDNA Clones Isolated from the Desiccation-Tolerant Plant Craterostigma plantagineum and Their Relationship to Other Water-Stress Genes | Q47920663 | ||
| The closest BLAST hit is often not the nearest neighbor | Q50114443 | ||
| Accumulation of Mn(II) in Deinococcus radiodurans facilitates gamma-radiation resistance. | Q51605946 | ||
| PprI: a general switch responsible for extreme radioresistance of Deinococcus radiodurans. | Q52550949 | ||
| Differential DNA binding and protection by dimeric and dodecameric forms of the ferritin homolog Dps from Deinococcus radiodurans. | Q53866839 | ||
| The Nudix hydrolases of Deinococcus radiodurans. | Q54025046 | ||
| SHOT: a web server for the construction of genome phylogenies | Q56918354 | ||
| Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles | Q57263144 | ||
| Structural and Genomic Correlates of Hyperthermostability | Q57986039 | ||
| Genome trees and the tree of life | Q31103613 | ||
| Phylogenetic analyses and comparative genomics of vitamin B6 (pyridoxine) and pyridoxal phosphate biosynthesis pathways. | Q31996465 | ||
| Potential genomic determinants of hyperthermophily | Q33186645 | ||
| Why is Deinococcus radiodurans so resistant to ionizing radiation? | Q33724335 | ||
| Physiologic determinants of radiation resistance in Deinococcus radiodurans | Q33786306 | ||
| Ionizing-radiation resistance in the desiccation-tolerant cyanobacterium Chroococcidiopsis | Q33896244 | ||
| Aldehyde oxidoreductases from Pyrococcus furiosus. | Q33939455 | ||
| An RNA ligase from Deinococcus radiodurans | Q33980934 | ||
| A poxvirus-like type IB topoisomerase family in bacteria | Q34011317 | ||
| Genomic evidence that the intracellular proteins of archaeal microbes contain disulfide bonds | Q34075149 | ||
| Inactivation of two homologues of proteins presumed to be involved in the desiccation tolerance of plants sensitizes Deinococcus radiodurans R1 to desiccation | Q34114208 | ||
| Elucidation of factors responsible for enhanced thermal stability of proteins: a structural genomics based study | Q34133781 | ||
| Thermophilic adaptation of proteins | Q34188393 | ||
| The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli | Q34281789 | ||
| Characterization of a fourth tungsten-containing enzyme from the hyperthermophilic archaeon Pyrococcus furiosus | Q34321329 | ||
| Deinococcus geothermalis sp. nov. and Deinococcus murrayi sp. nov., two extremely radiation-resistant and slightly thermophilic species from hot springs. | Q34442949 | ||
| Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea | Q34491429 | ||
| The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction. | Q34517542 | ||
| The role of iron in Campylobacter gene regulation, metabolism and oxidative stress defense | Q34691647 | ||
| Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation | Q34922870 | ||
| Methionine sulfoxide reductases: ubiquitous enzymes involved in antioxidant defense, protein regulation, and prevention of aging-associated diseases | Q36023901 | ||
| How radiation kills cells: survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress | Q36088685 | ||
| Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species | Q36444499 | ||
| Cloning the expression of a mammalian gene involved in the reduction of methionine sulfoxide residues in proteins | Q37709995 | ||
| Gene conversions in genes encoding outer-membrane proteins in H. pylori and C. pneumoniae | Q37874996 | ||
| Sequencing of heat shock protein 70 (DnaK) homologs from Deinococcus proteolyticus and Thermomicrobium roseum and their integration in a protein-based phylogeny of prokaryotes | Q37883926 | ||
| Cloning, deletion, and characterization of PadR, the transcriptional repressor of the phenolic acid decarboxylase-encoding padA gene of Lactobacillus plantarum | Q38342770 | ||
| The LexA protein from Deinococcus radiodurans is not involved in RecA induction following gamma irradiation | Q39505440 | ||
| Protective mechanisms against peptide and protein peroxides generated by singlet oxygen | Q40587792 | ||
| CO dehydrogenase | Q40945128 | ||
| DNA polymerase C of the thermophilic bacterium Thermus aquaticus: classification and phylogenetic analysis of the family C DNA polymerases | Q42600512 | ||
| Axe-Txe, a broad-spectrum proteic toxin-antitoxin system specified by a multidrug-resistant, clinical isolate of Enterococcus faecium | Q42695363 | ||
| An alternative pathway for reduced folate biosynthesis in bacteria and halophilic archaea | Q43016764 | ||
| Characterization and radiation resistance of new isolates of Rubrobacter radiotolerans and Rubrobacter xylanophilus | Q43027034 | ||
| Patterns of temperature adaptation in proteins from Methanococcus and Bacillus | Q43027098 | ||
| Patterns of temperature adaptation in proteins from the bacteria Deinococcus radiodurans and Thermus thermophilus | Q43028670 | ||
| High temperature dependence of 2,4-dichlorophenoxyacetic acid degradation by Fe3+/H(2)O(2) system | Q43362441 | ||
| Repair of oxidized proteins. Identification of a new methionine sulfoxide reductase | Q43777329 | ||
| Comparative studies on biochemical properties of an extreme thermophile, Thermus thermophilus HB 8 (author's transl) | Q45286368 | ||
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Thermus thermophilus | Q139470 |
| Deinococcus radiodurans | Q386827 | ||
| comparative genomics | Q1147112 | ||
| P304 | page(s) | 57 | |
| P577 | publication date | 2005-10-20 | |
| P1433 | published in | BMC Evolutionary Biology | Q13418959 |
| P1476 | title | Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance | |
| P478 | volume | 5 |
| Q92257337 | A Novel Noncoding RNA dsr11 Involved in Heat Stress Tolerance in Deinococcus radiodurans |
| Q34001992 | A close relationship between primary nucleotides sequence structure and the composition of functional genes in the genome of prokaryotes. |
| Q38310776 | A highly thermostable, homodimeric single-stranded DNA-binding protein from Deinococcus radiopugnans |
| Q35125915 | A mutant ('lab strain') of the hyperthermophilic archaeon Pyrococcus furiosus, lacking flagella, has unusual growth physiology |
| Q21203780 | A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action |
| Q41903850 | An Extreme Thermophile,Thermus thermophilus, Is a Polyploid Bacterium |
| Q33345594 | Basal DNA repair machinery is subject to positive selection in ionizing-radiation-resistant bacteria |
| Q27006730 | Biology of extreme radiation resistance: the way of Deinococcus radiodurans |
| Q57794758 | Case studies on potential G-quadruplex-forming sequences from the bacterial orders Deinococcales and Thermales derived from a survey of published genomes |
| Q43021043 | Characterization of DNA transport in the thermophilic bacterium Thermus thermophilus HB27. |
| Q33307454 | Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea |
| Q34256148 | Comparing the similarity of different groups of bacteria to the human proteome |
| Q21203772 | Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia |
| Q36140600 | Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia. |
| Q57230215 | Contrasted resistance of stone-dwelling Geodermatophilaceae species to stresses known to give rise to reactive oxygen species |
| Q51020850 | Crystal structure of the RNA 2',3'-cyclic phosphodiesterase from Deinococcus radiodurans. |
| Q27014793 | Cues and regulatory pathways involved in natural competence and transformation in pathogenic and environmental Gram-negative bacteria |
| Q38391448 | Deinococcus as new chassis for industrial biotechnology: biology, physiology and tools |
| Q21144427 | Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks |
| Q56657202 | Deinococcus radiodurans: What Belongs to the Survival Kit? |
| Q43022605 | Different clustering of genomes across life using the A-T-C-G and degenerate R-Y alphabets: early and late signaling on genome evolution? |
| Q39002369 | Does DNA replication direct locus-specific recombination during host immune evasion by antigenic variation in the African trypanosome? |
| Q39106532 | DrwH, a novel WHy domain-containing hydrophobic LEA5C protein from Deinococcus radiodurans, protects enzymatic activity under oxidative stress. |
| Q33294477 | Enzymes involved in DNA ligation and end-healing in the radioresistant bacterium Deinococcus radiodurans |
| Q41485404 | Evidence for existence of "mesotogas," members of the order Thermotogales adapted to low-temperature environments |
| Q42175578 | Evolution of lysine biosynthesis in the phylum deinococcus-thermus. |
| Q89037003 | From the High Arctic to the Equator: Do Soil Metagenomes Differ According to Our Expectations? |
| Q49722721 | Functional dissection of the three N-terminal general secretory pathway domains and the Walker motifs of the traffic ATPase PilF from Thermus thermophilus |
| Q42582509 | Genome Signature Difference between Deinococcus radiodurans and Thermus thermophilus |
| Q41886211 | Genome-wide transcriptome and antioxidant analyses on gamma-irradiated phases of deinococcus radiodurans R1. |
| Q24653367 | Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world |
| Q64140298 | Horizontal gene transfer as an indispensable driver for Neocallimastigomycota evolution into a distinct gut-dwelling fungal lineage |
| Q34347100 | How hyperthermophiles adapt to change their lives: DNA exchange in extreme conditions |
| Q42613375 | Hypothetical proteins present during recovery phase of radiation resistant bacterium Deinococcus radiodurans are under purifying selection |
| Q39181653 | Identification of a VapBC toxin-antitoxin system in a thermophilic bacterium Thermus thermophilus HB27. |
| Q36315403 | Identification of promoters recognized by RNA polymerase-sigmaE holoenzyme from Thermus thermophilus HB8. |
| Q43025209 | Insights into thermoadaptation and the evolution of mesophily from the bacterial phylum Thermotogae. |
| Q64884955 | Integrated mobile genetic elements in Thaumarchaeota. |
| Q51146530 | Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms. |
| Q61812582 | Into the Thermus Mobilome: Presence, Diversity and Recent Activities of Insertion Sequences Across Thermus spp |
| Q35091495 | Metabolic evolution of a deep-branching hyperthermophilic chemoautotrophic bacterium |
| Q34005338 | Microbial extremophiles at the limits of life |
| Q36332723 | Natural Sunlight Shapes Crude Oil-Degrading Bacterial Communities in Northern Gulf of Mexico Surface Waters |
| Q41834056 | New substitution models for rooting phylogenetic trees |
| Q34888431 | Noncanonical cell-to-cell DNA transfer in Thermus spp. is insensitive to argonaute-mediated interference |
| Q55116326 | Overview of Oxidative Stress Response Genes in Selected Halophilic Fungi. |
| Q30499016 | Oxidative stress resistance in Deinococcus radiodurans |
| Q37214652 | Phosphoproteomic analysis reveals the effects of PilF phosphorylation on type IV pilus and biofilm formation in Thermus thermophilus HB27 |
| Q39011259 | Protein oxidation: key to bacterial desiccation resistance? |
| Q47128046 | Proteometabolomic response of Deinococcus radiodurans exposed to UVC and vacuum conditions: Initial studies prior to the Tanpopo space mission. |
| Q38687889 | Radiation resistance in thermophiles: mechanisms and applications |
| Q38817116 | Role of Archaeal HerA Protein in the Biology of the Bacterium Thermus thermophilus. |
| Q43024706 | Roles of Mn-catalase and a possible heme peroxidase homologue in protection from oxidative stress in Thermus thermophilus. |
| Q33251971 | Sampling of microbial diversity by complete genomes |
| Q33236758 | Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. |
| Q21267170 | Sequence of the hyperplastic genome of the naturally competent Thermus scotoductus SA-01 |
| Q37389798 | Shuffling genes around in hot environments: the unique DNA transporter of Thermus thermophilus |
| Q21089995 | Small-Molecule Antioxidant Proteome-Shields in Deinococcus radiodurans |
| Q27658251 | Structure of an N-terminally truncated Nudix hydrolase DR2204 fromDeinococcus radiodurans |
| Q27690818 | Structure of the monofunctional heme catalase DR1998 from Deinococcus radiodurans |
| Q81771237 | Synonymous codon usage bias dependent on local nucleotide context in the class Deinococci |
| Q36205097 | Taxonomic and functional characteristics of microbial communities and their correlation with physicochemical properties of four geothermal springs in Odisha, India |
| Q22065481 | The Genome of Thermosipho africanus TCF52B: Lateral Genetic Connections to the Firmicutes and Archaea |
| Q92106424 | The Role of Iron and Copper on the Oligomerization Dynamics of DR_2577, the Main S-Layer Protein of Deinococcus radiodurans |
| Q41332254 | The Thermus thermophilus comEA/comEC operon is associated with DNA binding and regulation of the DNA translocator and type IV pili. |
| Q42314486 | The effect of extrinsic mortality on genome size evolution in prokaryotes. |
| Q38058533 | The effects of natural variation in background radioactivity on humans, animals and other organisms |
| Q37532040 | The linkage between reverse gyrase and hyperthermophiles: a review of their invariable association |
| Q38366561 | The survival mechanisms of thermophiles at high temperatures: an angle of omics |
| Q33708659 | The tree and net components of prokaryote evolution |
| Q43656333 | Thermostable lipases from extremely radioresistant bacterium Deinococcus radiodurans: cloning, expression, and biochemical characterization |
| Q30374445 | Thermus thermophilus as biological model. |
| Q28485552 | Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8 |
| Q35075071 | Transcriptional analysis of Deinococcus radiodurans reveals novel small RNAs that are differentially expressed under ionizing radiation |
| Q35701744 | Unraveling adaptation of Pontibacter korlensis to radiation and infertility in desert through complete genome and comparative transcriptomic analysis |
| Q36421369 | Untargeted metabolite profiling reveals that nitric oxide bioynthesis is an endogenous modulator of carotenoid biosynthesis in Deinococcus radiodurans and is required for extreme ionizing radiation resistance |
| Q36500812 | Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer |
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