| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2002PNAS...99.4644S |
| P356 | DOI | 10.1073/PNAS.032671499 |
| P932 | PMC publication ID | 123701 |
| P698 | PubMed publication ID | 11930014 |
| P5875 | ResearchGate publication ID | 11435527 |
| P50 | author | Aravind L Iyer | Q4784512 |
| Eugene Koonin | Q3699974 | ||
| Sergei A Kozyavkin | Q58170846 | ||
| Yuri Wolf | Q59640168 | ||
| Kira Makarova | Q63964276 | ||
| D A Natale | Q99552327 | ||
| Roman L Tatusov | Q114783040 | ||
| Igor B. Rogozin | Q45324573 | ||
| P2093 | author name string | Karl O Stetter | |
| Andrei G Malykh | |||
| Galina I Belova | |||
| Alexei I Slesarev | |||
| Nikolai N Polushin | |||
| Vera V Shakhova | |||
| Katja V Mezhevaya | |||
| Olga V Shcherbinina | |||
| P2860 | cites work | Genome trees constructed using five different approaches suggest new major bacterial clades | Q21284133 |
| KEGG: kyoto encyclopedia of genes and genomes | Q24515297 | ||
| Bioenergetics of the Archaea | Q24516903 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics | Q24548476 | ||
| SMART, a simple modular architecture research tool: identification of signaling domains | Q24597380 | ||
| Automated finishing with autofinish | Q24621392 | ||
| Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach | Q24621595 | ||
| Before enzymes and templates: theory of surface metabolism | Q24634337 | ||
| The winds of (evolutionary) change: breathing new life into microbiology | Q24669805 | ||
| On the maximum likelihood method in molecular phylogenetics | Q67989380 | ||
| Gene order is not conserved in bacterial evolution | Q71476689 | ||
| Non-orthologous gene displacement | Q71651862 | ||
| A reverse gyrase with an unusual structure. A type I DNA topoisomerase from the hyperthermophile Methanopyrus kandleri is a two-subunit protein | Q72362870 | ||
| Topoisomerase V from Methanopyrus kandleri | Q73995650 | ||
| Methanopyrus kandleri: an archaeal methanogen unrelated to all other known methanogens | Q74470091 | ||
| Activation and thermostabilization effects of cyclic 2, 3-diphosphoglycerate on enzymes from the hyperthermophilic Methanopyrus kandleri | Q77501177 | ||
| Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences | Q24799510 | ||
| Base-calling of automated sequencer traces using phred. II. Error probabilities | Q27860615 | ||
| Base-calling of automated sequencer traces using phred. I. Accuracy assessment | Q27860665 | ||
| Consed: a graphical tool for sequence finishing | Q27860740 | ||
| A genomic perspective on protein families | Q27860913 | ||
| The PSIPRED protein structure prediction server | Q27860953 | ||
| T-Coffee: A novel method for fast and accurate multiple sequence alignment | Q27860999 | ||
| Horizontal gene transfer in prokaryotes: quantification and classification | Q29616017 | ||
| Genome phylogeny based on gene content | Q29617415 | ||
| GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions | Q29617560 | ||
| Lineage-specific gene expansions in bacterial and archaeal genomes | Q30662261 | ||
| A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis | Q30669971 | ||
| Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context | Q30982525 | ||
| In vitro selection of kinase and ligase deoxyribozymes | Q31952832 | ||
| Stress genes and proteins in the archaea | Q33334155 | ||
| A two-subunit type I DNA topoisomerase (reverse gyrase) from an extreme hyperthermophile. | Q33601096 | ||
| Evidence for an early prokaryotic origin of histones H2A and H4 prior to the emergence of eukaryotes | Q34654528 | ||
| A type IB topoisomerase with DNA repair activities | Q35925638 | ||
| The precursor strategy: terminus methoxyoxalamido modifiers for single and multiple functionalization of oligodeoxyribonucleotides | Q39572313 | ||
| New dye-labeled terminators for improved DNA sequencing patterns | Q39721721 | ||
| The use of modified primers to eliminate cycle sequencing artifacts | Q39729717 | ||
| Methanobacterium thermoautotrophicum encodes two multisubunit membrane-bound [NiFe] hydrogenases. Transcription of the operons and sequence analysis of the deduced proteins | Q42610284 | ||
| Protein-coding regions prediction combining similarity searches and conservative evolutionary properties of protein-coding sequences | Q42689977 | ||
| Salt dependence, kinetic properties and catalytic mechanism of N-formylmethanofuran:tetrahydromethanopterin formyltransferase from the extreme thermophile Methanopyrus kandleri | Q43016642 | ||
| DNA topoisomerase V is a relative of eukaryotic topoisomerase I from a hyperthermophilic prokaryote | Q43023452 | ||
| Methanococcus jannaschii prolyl-cysteinyl-tRNA synthetase possesses overlapping amino acid binding sites | Q43515887 | ||
| An aminoacyl tRNA synthetase whose sequence fits into neither of the two known classes. | Q43595735 | ||
| 2'-modified oligonucleotides from methoxyoxalamido and succinimido precursors: synthesis, properties, and applications. | Q43741861 | ||
| The Phylogeny of Methanopyrus kandleri | Q45312607 | ||
| NOTES: Phylogeny of Methanopyrus kandleri Based on Methyl Coenzyme M Reductase Operons | Q45312705 | ||
| Purification and characterization of DNA topoisomerase V. An enzyme from the hyperthermophilic prokaryote Methanopyrus kandleri that resembles eukaryotic topoisomerase I. | Q46443305 | ||
| Identifying potential tRNA genes in genomic DNA sequences | Q48215675 | ||
| A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. | Q52222665 | ||
| Evolution of prokaryotic gene order: genome rearrangements in closely related species. | Q52542073 | ||
| Methanopyrus kandleri, gen. and sp. nov. represents a novel group of hyperthermophilic methanogens, growing at 110�C | Q55883332 | ||
| Non-orthologous gene displacement | Q56918662 | ||
| A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites | Q57825167 | ||
| P433 | issue | 7 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | genomics | Q222046 |
| whole genome sequencing | Q2068526 | ||
| Methanopyrus kandleri | Q16664181 | ||
| P304 | page(s) | 4644-4649 | |
| P577 | publication date | 2002-04-01 | |
| P1433 | published in | Proceedings of the National Academy of Sciences of the United States of America | Q1146531 |
| P1476 | title | The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens | |
| P478 | volume | 99 |
| Q27655337 | A Cytidine Deaminase Edits C to U in Transfer RNAs in Archaea |
| Q41461821 | A c subunit with four transmembrane helices and one ion (Na+)-binding site in an archaeal ATP synthase: implications for c ring function and structure |
| Q24807153 | A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes |
| Q21283975 | A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land |
| Q33988956 | A new type of sulfite reductase, a novel coenzyme F420-dependent enzyme, from the methanarchaeon Methanocaldococcus jannaschii |
| Q34301047 | A pursuit of lineage-specific and niche-specific proteome features in the world of archaea |
| Q38321961 | ABC transporter for corrinoids in Halobacterium sp. strain NRC-1. |
| Q36476087 | ATP synthases with novel rotor subunits: new insights into structure, function and evolution of ATPases |
| Q38151874 | Adaptations of anaerobic archaea to life under extreme energy limitation |
| Q36922593 | Amino acid modifications on tRNA. |
| Q34428709 | An intertwined evolutionary history of methanogenic archaea and sulfate reduction |
| Q33373282 | An uncultivated crenarchaeota contains functional bacteriochlorophyll a synthase |
| Q24799388 | Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome |
| Q35334249 | Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales |
| Q24791153 | Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox |
| Q24810644 | Asymmetry in the burial of hydrophobic residues along the histone chains of eukarya, archaea and a transcription factor |
| Q80057395 | Biochemical analysis of neomycin-resistance in the methanoarchaeon Methanothermobacter thermautotrophicus and some implications for energetic processes in this strain |
| Q36462819 | Bioenergetics of archaea: ATP synthesis under harsh environmental conditions. |
| Q33714598 | Characterization of a novel zinc-containing, lysine-specific aminopeptidase from the hyperthermophilic archaeon Pyrococcus furiosus |
| Q37200742 | Characterization of the Family I inorganic pyrophosphatase from Pyrococcus horikoshii OT3 |
| Q43022588 | Characterization of the frhAGB-encoding hydrogenase from a non-methanogenic hyperthermophilic archaeon |
| Q34708084 | Characterization of the methanogen community in a household anaerobic digester fed with swine manure in China |
| Q37596990 | Characterization of the nodularin synthetase gene cluster and proposed theory of the evolution of cyanobacterial hepatotoxins. |
| Q33307454 | Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea |
| Q92128982 | Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota |
| Q36457149 | Codon choice in genes depends on flanking sequence information--implications for theoretical reverse translation |
| Q28601828 | Coevolution Theory of the Genetic Code at Age Forty: Pathway to Translation and Synthetic Life |
| Q40975968 | Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles |
| Q21192737 | Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth |
| Q24796655 | Comparative genomics of Archaea: how much have we learned in six years, and what's next? |
| Q24678967 | Comparative genomics of the lactic acid bacteria |
| Q22065454 | Complete Genome Sequence of the Genetically Tractable Hydrogenotrophic Methanogen Methanococcus maripaludis |
| Q33492600 | Comprehensive computational analysis of Hmd enzymes and paralogs in methanogenic Archaea |
| Q56918320 | Conservation of gene co-regulation in prokaryotes and eukaryotes |
| Q30781626 | Construction of a mini-Tn5-luxCDABE mutant library in Pseudomonas aeruginosa PAO1: a tool for identifying differentially regulated genes |
| Q42149574 | Cooperation between catalytic and DNA binding domains enhances thermostability and supports DNA synthesis at higher temperatures by thermostable DNA polymerases. |
| Q25256708 | Criteria for effective design, construction, and gene knockdown by shRNA vectors |
| Q27683512 | Crystal structure of Arabidopsis glutamyl-tRNA reductase in complex with its stimulator protein |
| Q94101457 | Current Awareness on Comparative and Functional Genomics |
| Q36403657 | CvP-bias as an index to predict the life style of last common ancestor |
| Q44072126 | Cysteine activation is an inherent in vitro property of prolyl-tRNA synthetases |
| Q34555735 | Cysteinyl-tRNA(Cys) formation in Methanocaldococcus jannaschii: the mechanism is still unknown |
| Q41846155 | DNA uracil repair initiated by the archaeal ExoIII homologue Mth212 via direct strand incision. |
| Q33310495 | Denoising inferred functional association networks obtained by gene fusion analysis |
| Q35028076 | Differences in dinucleotide frequencies of thermophilic genes encoding water soluble and membrane proteins |
| Q36262997 | Discovering novel biology by in silico archaeology |
| Q37200753 | Distribution, structure and diversity of "bacterial" genes encoding two-component proteins in the Euryarchaeota |
| Q35577559 | Energy Conservation in Acetogenic Bacteria |
| Q35787532 | Energy-converting [NiFe] hydrogenases from archaea and extremophiles: ancestors of complex I. |
| Q24817209 | Entropic stabilization of proteins and its proteomic consequences |
| Q35543783 | Enzymes That Cleave and Religate DNA at High Temperature: The Same Story with Different Actors |
| Q24810754 | Evidence of a large novel gene pool associated with prokaryotic genomic islands |
| Q44083677 | Evolutionary divergence of the archaeal aspartyl-tRNA synthetases into discriminating and nondiscriminating forms |
| Q33551432 | Expression, purification and structural analysis of the Pyrococcus abyssi RNA binding protein PAB1135. |
| Q63383566 | Extra-chromosomal elements and the evolution of cellular DNA replication machineries |
| Q27664189 | Flexibility and communication within the structure of the Mycobacterium smegmatis methionyl‐tRNA synthetase |
| Q34009792 | From one amino acid to another: tRNA-dependent amino acid biosynthesis |
| Q34401555 | Genetic manipulations of the hyperthermophilic piezophilic archaeon Thermococcus barophilus |
| Q34083854 | Genetic structure of three fosmid-fragments encoding 16S rRNA genes of the Miscellaneous Crenarchaeotic Group (MCG): implications for physiology and evolution of marine sedimentary archaea |
| Q35599165 | Genome and proteome of Campylobacter jejuni bacteriophage NCTC 12673 |
| Q21135273 | Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales |
| Q34838508 | Genome sequence of a nephritogenic and highly transformable M49 strain of Streptococcus pyogenes |
| Q22066385 | Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy |
| Q31103613 | Genome trees and the tree of life |
| Q37100344 | Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation |
| Q21146404 | Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath) |
| Q41842762 | Helix-hairpin-helix protein MJ1434 from Methanocaldococcus jannaschii and EndoIV homologue TTC0482 from Thermus thermophilus HB27 do not process DNA uracil residues |
| Q28754322 | Higher-level classification of the Archaea: evolution of methanogenesis and methanogens |
| Q43242951 | Hydrothermal focusing of chemical and chemiosmotic energy, supported by delivery of catalytic Fe, Ni, Mo/W, Co, S and Se, forced life to emerge |
| Q31808704 | Identification and characterization of human archaemetzincin-1 and -2, two novel members of a family of metalloproteases widely distributed in Archaea. |
| Q28588201 | Identification and characterization of phosphoseryl-tRNA[Ser]Sec kinase |
| Q37596096 | Identification and functional verification of archaeal-type phosphoenolpyruvate carboxylase, a missing link in archaeal central carbohydrate metabolism |
| Q34365430 | Identification of BHB splicing motifs in intron-containing tRNAs from 18 archaea: evolutionary implications |
| Q42616906 | Identification of pseudomurein cell wall binding domains |
| Q21343029 | Identification of replication origins in archaeal genomes based on the Z-curve method |
| Q36476802 | Identifying natural substrates for chaperonins using a sequence-based approach |
| Q35752861 | In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs |
| Q37202314 | Lineage-specific partitions in archaeal transcription |
| Q43027654 | Localized melting of duplex DNA by Cdc6/Orc1 at the DNA replication origin in the hyperthermophilic archaeon Pyrococcus furiosus. |
| Q39913662 | Lysine-2,3-aminomutase and beta-lysine acetyltransferase genes of methanogenic archaea are salt induced and are essential for the biosynthesis of Nepsilon-acetyl-beta-lysine and growth at high salinity |
| Q33681520 | Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii |
| Q29618150 | Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota |
| Q96950674 | Methane, arsenic, selenium and the origins of the DMSO reductase family |
| Q44072129 | Methanocaldococcus jannaschii prolyl-tRNA synthetase charges tRNA(Pro) with cysteine |
| Q36123645 | Microbial community genomics in the ocean |
| Q79748541 | Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery |
| Q41758840 | Modularized evolution in archaeal methanogens phylogenetic forest |
| Q43017596 | N6-Acetyladenosine: a new modified nucleoside from Methanopyrus kandleri tRNA. |
| Q21092876 | Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales? |
| Q42556414 | One-carbon metabolic pathway rewiring in Escherichia coli reveals an evolutionary advantage of 10-formyltetrahydrofolate synthetase (Fhs) in survival under hypoxia |
| Q35493875 | Parallel evolution of transcriptome architecture during genome reorganization |
| Q21263202 | Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis |
| Q33186645 | Potential genomic determinants of hyperthermophily |
| Q24609972 | Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities |
| Q24646993 | Profile-profile comparisons by COMPASS predict intricate homologies between protein families |
| Q80882163 | Prokaryote phylogeny based on ribosomal proteins and aminoacyl tRNA synthetases by using the compositional distance approach |
| Q35844908 | Prokaryote phylogeny without sequence alignment: from avoidance signature to composition distance |
| Q38748307 | Protein-Sol: A web tool for predicting protein solubility from sequence. |
| Q34317156 | Purification, overproduction, and partial characterization of beta-RFAP synthase, a key enzyme in the methanopterin biosynthesis pathway |
| Q34341390 | RNA-Seq analyses reveal the order of tRNA processing events and the maturation of C/D box and CRISPR RNAs in the hyperthermophile Methanopyrus kandleri |
| Q57258765 | Search for Primitive Methanopyrus Based on Genetic Distance Between Val- and Ile-tRNA Synthetases |
| Q21296868 | Selenocysteine, pyrrolysine, and the unique energy metabolism of methanogenic archaea |
| Q33725310 | Sequence analysis of Leuconostoc mesenteroides bacteriophage Phi1-A4 isolated from an industrial vegetable fermentation. |
| Q57898449 | Sequence similarity network reveals the imprints of major diversification events in the evolution of microbial life |
| Q30489524 | Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model |
| Q27653616 | Structural analysis reveals DNA binding properties of Rv2827c, a hypothetical protein from Mycobacterium tuberculosis |
| Q37855994 | Structural divergence of the rotary ATPases |
| Q24541378 | Structure of the N-terminal fragment of topoisomerase V reveals a new family of topoisomerases |
| Q38356405 | Subunit interaction and regulation of activity through terminal domains of the family D DNA polymerase from Pyrococcus horikoshii |
| Q27661646 | TM0486 from the Hyperthermophilic Anaerobe Thermotoga maritima is a Thiamin-binding Protein Involved in Response of the Cell to Oxidative Conditions |
| Q57017428 | Tales of the unexpected |
| Q73408177 | The A‐type ATP synthase subunit K of Methanopyrus kandleri is deduced from its sequence to form a monomeric rotor comprising 13 hairpin domains |
| Q21284294 | The COG database: an updated version includes eukaryotes |
| Q57080988 | The Evolutionary History of Archaeal MCM Helicases: A Case Study of Vertical Evolution Combined with Hitchhiking of Mobile Genetic Elements |
| Q35924408 | The Geobacillus stearothermophilus V iscS gene, encoding cysteine desulfurase, confers resistance to potassium tellurite in Escherichia coli K-12. |
| Q33855609 | The Haloferax volcanii FtsY homolog is critical for haloarchaeal growth but does not require the A domain |
| Q49964016 | The RNA-splicing endonuclease from the euryarchaeaon Methanopyrus kandleri is a heterotetramer with constrained substrate specificity |
| Q21563623 | The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode |
| Q49290554 | The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise |
| Q38331412 | The euryarchaeota, nature's medium for engineering of single-stranded DNA-binding proteins. |
| Q22065443 | The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis |
| Q22122105 | The genome sequence of the extreme thermophile Thermus thermophilus |
| Q33636782 | The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand |
| Q24669622 | The origin and evolution of Archaea: a state of the art |
| Q42647114 | The origin of eukaryotes is suggested as the symbiosis of pyrococcus into gamma-proteobacteria by phylogenetic tree based on gene content |
| Q35892704 | The phosphoenolpyruvate carboxylase from Methanothermobacter thermautotrophicus has a novel structure |
| Q27640478 | The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases |
| Q36992142 | The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods |
| Q34432145 | Thermophilic lifestyle for an uncultured archaeon from hydrothermal vents: evidence from environmental genomics |
| Q41891104 | Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions |
| Q30858187 | Three-dimensional structure of A1A0 ATP synthase from the hyperthermophilic archaeon Pyrococcus furiosus by electron microscopy. |
| Q57258889 | Transfer RNA paralogs: evidence for genetic code-amino acid biosynthesis coevolution and an archaeal root of life |
| Q36265292 | Unsupervised detection of regulatory gene expression information in different genomic regions enables gene expression ranking |
| Q35538472 | Viruses of hyperthermophilic Archaea |
| Q28768508 | tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features |
Search more.