| scholarly article | Q13442814 |
| P50 | author | Nitin S Baliga | Q61147359 |
| P2093 | author name string | Min Pan | |
| John A Leigh | |||
| Steven M Yannone | |||
| Michael W W Adams | |||
| Joseph Slagel | |||
| Robert L Moritz | |||
| Murray Hackett | |||
| Sung Ho Yoon | |||
| Dan Tenenbaum | |||
| David J Reiss | |||
| Adam Barnebey | |||
| Angeli Lal Menon | |||
| J Christopher Bare | |||
| Sujung Lim | |||
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| Cold shock of a hyperthermophilic archaeon: Pyrococcus furiosus exhibits multiple responses to a suboptimal growth temperature with a key role for membrane-bound glycoproteins. | Q33553697 | ||
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| Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach | Q34380369 | ||
| Genomic and genetic dissection of an archaeal regulon | Q34471104 | ||
| Overlapping repressor binding sites regulate expression of the Methanococcus maripaludis glnK(1) operon | Q35015417 | ||
| Whole-genome DNA microarray analysis of a hyperthermophile and an archaeon: Pyrococcus furiosus grown on carbohydrates or peptides. | Q35098735 | ||
| Bacterial oligopeptide-binding proteins | Q35584132 | ||
| Functionally distinct genes regulated by hydrogen limitation and growth rate in methanogenic Archaea | Q35829119 | ||
| The anatomy of microbial cell state transitions in response to oxygen | Q36004662 | ||
| Responses of hyperthermophilic crenarchaea to UV irradiation | Q36465637 | ||
| Global responses of Methanococcus maripaludis to specific nutrient limitations and growth rate | Q36483719 | ||
| Transcriptome analysis of infection of the archaeon Sulfolobus solfataricus with Sulfolobus turreted icosahedral virus. | Q36594126 | ||
| Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs | Q36649634 | ||
| Identification of membrane proteins in the hyperthermophilic archaeon pyrococcus furiosus using proteomics and prediction programs | Q36750495 | ||
| The loci of evolution: how predictable is genetic evolution? | Q37035424 | ||
| Hydrogenases of the model hyperthermophiles. | Q37124156 | ||
| The organization of the bacterial genome. | Q37208839 | ||
| Prevalence of transcription promoters within archaeal operons and coding sequences. | Q37262286 | ||
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| Studying bacterial transcriptomes using RNA-seq | Q37796158 | ||
| Microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus exposed to gamma irradiation | Q38310780 | ||
| Disruption of the operon encoding Ehb hydrogenase limits anabolic CO2 assimilation in the archaeon Methanococcus maripaludis | Q41875477 | ||
| Transcriptional regulation of genes encoding the selenium-free [NiFe]-hydrogenases in the archaeon Methanococcus voltae involves positive and negative control elements | Q41949928 | ||
| Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation | Q42334282 | ||
| Insights into the metabolism of elemental sulfur by the hyperthermophilic archaeon Pyrococcus furiosus: characterization of a coenzyme A- dependent NAD(P)H sulfur oxidoreductase | Q42620260 | ||
| On the origin of operons and their possible role in evolution toward thermophily | Q43026841 | ||
| Oxidative stress protection and the repair response to hydrogen peroxide in the hyperthermophilic archaeon Pyrococcus furiosus and in related species | Q43105162 | ||
| brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in Halobacterium salinarum | Q43510596 | ||
| Continuous culture of Methanococcus maripaludis under defined nutrient conditions | Q45035810 | ||
| Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale | Q46069507 | ||
| Pyrococcus furiosus: large-scale cultivation and enzyme purification. | Q46387399 | ||
| Functional characterization and high-throughput proteomic analysis of interrupted genes in the archaeon Sulfolobus solfataricus | Q46953049 | ||
| Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae | Q47359603 | ||
| Evolution of tuf genes: ancient duplication, differential loss and gene conversion | Q47606671 | ||
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| Choosing BLAST options for better detection of orthologs as reciprocal best hits. | Q50662838 | ||
| A predictive model for transcriptional control of physiology in a free living cell. | Q51897861 | ||
| Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes. | Q53932049 | ||
| Transcriptome Complexity in a Genome-Reduced Bacterium | Q56918071 | ||
| P433 | issue | 11 | |
| P921 | main subject | transcriptome | Q252857 |
| P304 | page(s) | 1892-1904 | |
| P577 | publication date | 2011-07-12 | |
| P1433 | published in | Genome Research | Q5533485 |
| P1476 | title | Parallel evolution of transcriptome architecture during genome reorganization | |
| P478 | volume | 21 |
| Q41983548 | A Novel Transcriptional Regulator Related to Thiamine Phosphate Synthase Controls Thiamine Metabolism Genes in Archaea. |
| Q33580304 | A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea |
| Q37272434 | A systems level predictive model for global gene regulation of methanogenesis in a hydrogenotrophic methanogen |
| Q42207412 | A workflow for genome-wide mapping of archaeal transcription factors with ChIP-seq. |
| Q44864971 | Ancillary contributions of heterologous biotin protein ligase and carbonic anhydrase for CO2 incorporation into 3-hydroxypropionate by metabolically engineered Pyrococcus furiosus |
| Q28655534 | Architecture for interoperable software in biology |
| Q36331250 | Bioprocessing analysis of Pyrococcus furiosus strains engineered for CO₂-based 3-hydroxypropionate production |
| Q34165402 | Conservation of transcription start sites within genes across a bacterial genus |
| Q37619116 | Detecting differential growth of microbial populations with Gaussian process regression. |
| Q36760526 | Effects of H2 and formate on growth yield and regulation of methanogenesis in Methanococcus maripaludis |
| Q28659675 | Engineering hydrogen gas production from formate in a hyperthermophile by heterologous production of an 18-subunit membrane-bound complex |
| Q43029689 | Ethanol production by the hyperthermophilic archaeon Pyrococcus furiosus by expression of bacterial bifunctional alcohol dehydrogenases. |
| Q41122520 | Expanded target and cofactor repertoire for the transcriptional activator LysM from Sulfolobus |
| Q36762595 | Exploiting microbial hyperthermophilicity to produce an industrial chemical, using hydrogen and carbon dioxide |
| Q39612589 | Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome |
| Q34619846 | Genome-scale analysis of gene function in the hydrogenotrophic methanogenic archaeon Methanococcus maripaludis |
| Q35889279 | Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus |
| Q33701481 | Genomic and transcriptomic landscape of Escherichia coli BL21(DE3) |
| Q36516281 | Heterologous Production of an Energy-Conserving Carbon Monoxide Dehydrogenase Complex in the Hyperthermophile Pyrococcus furiosus |
| Q43173918 | Identification of the first transcriptional activator of an archaellum operon in a euryarchaeon |
| Q92239134 | Next Generation DNA-Seq and Differential RNA-Seq Allow Re-annotation of the Pyrococcus furiosus DSM 3638 Genome and Provide Insights Into Archaeal Antisense Transcription |
| Q43023615 | Overlapping genes: a new strategy of thermophilic stress tolerance in prokaryotes |
| Q35254948 | PAIDB v2.0: exploration and analysis of pathogenicity and resistance islands |
| Q30017682 | Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis |
| Q36525066 | Quantifying homologous replacement of loci between haloarchaeal species. |
| Q36049234 | Recombinant expression library of Pyrococcus furiosus constructed by high-throughput cloning: a useful tool for functional and structural genomics |
| Q47894799 | Role of free DNA ends and protospacer adjacent motifs for CRISPR DNA uptake in Pyrococcus furiosus |
| Q40937422 | Systems biology approaches to defining transcription regulatory networks in halophilic archaea |
| Q44861580 | Temperature-dependent acetoin production by Pyrococcus furiosus is catalyzed by a biosynthetic acetolactate synthase and its deletion improves ethanol production |
| Q21092408 | The genome organization of Thermotoga maritima reflects its lifestyle |
| Q38366561 | The survival mechanisms of thermophiles at high temperatures: an angle of omics |
| Q21090591 | Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of life |
| Q91663604 | Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754T ) and the laboratory strains R1 and NRC-1 |
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