| scholarly article | Q13442814 |
| P356 | DOI | 10.1007/S00239-004-2652-5 |
| P698 | PubMed publication ID | 15693617 |
| P2093 | author name string | Kazuo Hamada | |
| Takao Shinozawa | |||
| Daisuke Miyata | |||
| Tokumasa Horiike | |||
| P2860 | cites work | Using homolog groups to create a whole-genomic tree of free-living organisms: an update. | Q53671263 |
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| Genome sequence of a serotype M3 strain of group A Streptococcus: phage-encoded toxins, the high-virulence phenotype, and clone emergence | Q22066234 | ||
| The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts | Q22066244 | ||
| Genome sequence of Streptococcus mutans UA159, a cariogenic dental pathogen | Q22066245 | ||
| The complete genome of the crenarchaeon Sulfolobus solfataricus P2 | Q22066249 | ||
| The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium | Q22066260 | ||
| Complete genome sequence of Caulobacter crescentus | Q22066320 | ||
| Complete genomic sequence of Pasteurella multocida, Pm70 | Q22066329 | ||
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| Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater | Q22066369 | ||
| The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens | Q22066371 | ||
| Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis | Q22122107 | ||
| Comparison of the genomes of two Xanthomonas pathogens with differing host specificities | Q22122346 | ||
| Genome sequence of the plant pathogen Ralstonia solanacearum | Q22122347 | ||
| The complete genome sequence of the gastric pathogen Helicobacter pylori | Q22122352 | ||
| The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus | Q22122358 | ||
| The complete genome sequence of the gram-positive bacterium Bacillus subtilis | Q22122360 | ||
| Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 | Q22122369 | ||
| Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18 | Q22122370 | ||
| Genome sequence of Yersinia pestis, the causative agent of plague | Q22122371 | ||
| Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen | Q22122393 | ||
| DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae | Q22122394 | ||
| The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis | Q22122395 | ||
| Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491 | Q22122399 | ||
| The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences | Q22122402 | ||
| The complete genome of the hyperthermophilic bacterium Aquifex aeolicus | Q22122406 | ||
| Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence | Q22122411 | ||
| Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima | Q22122435 | ||
| Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments | Q24537612 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes | Q24548562 | ||
| Cloning of Giardia lamblia heat shock protein HSP70 homologs: implications regarding origin of eukaryotic cells and of endoplasmic reticulum | Q24563757 | ||
| The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403 | Q24618705 | ||
| Archaea and the prokaryote-to-eukaryote transition | Q24643523 | ||
| Horizontal gene transfer among genomes: the complexity hypothesis | Q24651300 | ||
| Improved tools for biological sequence comparison | Q24652199 | ||
| Determining divergence times with a protein clock: update and reevaluation | Q24657492 | ||
| The origin of eukaryotes: the difference between prokaryotic and eukaryotic cells | Q24671773 | ||
| Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics | Q24676592 | ||
| The neighbor-joining method: a new method for reconstructing phylogenetic trees | Q25939010 | ||
| Genome sequence of the nematode C. elegans: a platform for investigating biology | Q27860527 | ||
| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| Whole-genome random sequencing and assembly of Haemophilus influenzae Rd | Q27860765 | ||
| The genome sequence of Drosophila melanogaster | Q27860796 | ||
| OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes | Q27860860 | ||
| Life with 6000 genes | Q27860877 | ||
| Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology | Q28201683 | ||
| Whole genome sequencing of meticillin-resistant Staphylococcus aureus | Q28202807 | ||
| The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea | Q28215173 | ||
| The genome of the natural genetic engineer Agrobacterium tumefaciens C58 | Q28492352 | ||
| Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) | Q29547307 | ||
| Phylogenetic classification and the universal tree | Q29547749 | ||
| Automatic clustering of orthologs and in-paralogs from pairwise species comparisons | Q29615401 | ||
| Genome phylogeny based on gene content | Q29617415 | ||
| The hydrogen hypothesis for the first eukaryote | Q29618266 | ||
| Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes | Q30004701 | ||
| Homology a personal view on some of the problems | Q30011139 | ||
| Lineage-specific gene expansions in bacterial and archaeal genomes | Q30662261 | ||
| Metabolic symbiosis at the origin of eukaryotes. | Q33594198 | ||
| Interpreting the universal phylogenetic tree | Q33910024 | ||
| Searching for the common ancestor | Q33949864 | ||
| Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences | Q34049657 | ||
| The composite genome of the legume symbiont Sinorhizobium meliloti | Q34085156 | ||
| Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. | Q34106809 | ||
| Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes | Q34161454 | ||
| Protein-based phylogenies support a chimeric origin for the eukaryotic genome | Q34320040 | ||
| Methanotrophic bacteria | Q34396674 | ||
| Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis | Q34478073 | ||
| Was the nucleus the first endosymbiont? | Q35140886 | ||
| Structural dynamics of eukaryotic chromosome evolution | Q35195593 | ||
| Genomic evidence for two functionally distinct gene classes. | Q37393145 | ||
| Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis | Q39597331 | ||
| Whole genome-based phylogenetic analysis of free-living microorganisms | Q39729408 | ||
| A complete sequence of the T. tengcongensis genome | Q39860784 | ||
| Lateral transfer in natural populations of eukaryotes | Q40722162 | ||
| Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria supported by the newly clarified origin of functional genes | Q42688379 | ||
| Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1. | Q43031212 | ||
| The mosaic nature of the eukaryotic nucleus | Q47756512 | ||
| Detecting putative orthologs. | Q51982540 | ||
| P433 | issue | 5 | |
| P921 | main subject | phylogenetic tree | Q242125 |
| Proteobacteria | Q130999 | ||
| phylogenetics | Q171184 | ||
| P304 | page(s) | 606-619 | |
| P577 | publication date | 2004-11-01 | |
| P1433 | published in | Journal of Molecular Evolution | Q6295595 |
| P1476 | title | The origin of eukaryotes is suggested as the symbiosis of pyrococcus into gamma-proteobacteria by phylogenetic tree based on gene content | |
| P478 | volume | 59 |
| Q28730149 | An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin |
| Q35372352 | An inside-out origin for the eukaryotic cell |
| Q28714235 | Breaking through a phylogenetic impasse: a pair of associated archaea might have played host in the endosymbiotic origin of eukaryotes |
| Q28741296 | Early evolution without a tree of life |
| Q26795689 | Endosymbiotic theories for eukaryote origin |
| Q29616065 | Eukaryotic evolution, changes and challenges |
| Q26749155 | Microbes Drive Evolution of Animals and Plants: the Hologenome Concept |
| Q30421052 | Minimization of extracellular space as a driving force in prokaryote association and the origin of eukaryotes |
| Q26795686 | Origin of eukaryotes from within archaea, archaeal eukaryome and bursts of gene gain: eukaryogenesis just made easier? |
| Q41958674 | Origin of eukaryotic cells as a symbiosis of parasitic alpha-proteobacteria in the periplasm of two-membrane-bounded sexual pre-karyotes |
| Q28763672 | Origin of phagotrophic eukaryotes as social cheaters in microbial biofilms |
| Q83025696 | Orthologs of meiotic proteins in prokaryotic proteomes |
| Q24647422 | Phylogenetic construction of 17 bacterial phyla by new method and carefully selected orthologs |
| Q38555940 | Phylogenomic test of the hypotheses for the evolutionary origin of eukaryotes |
| Q28246136 | Planctomycetes and eukaryotes: a case of analogy not homology |
| Q34248116 | The archaeal legacy of eukaryotes: a phylogenomic perspective. |
| Q24642710 | The deep archaeal roots of eukaryotes |
| Q26823644 | The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes |
| Q37947071 | The falsifiability of the models for the origin of eukaryotes. |
| Q30478962 | The tree of one percent. |
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