Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning.

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Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/AEM.65.4.1662-1669.1999
P932PMC publication ID91235
P698PubMed publication ID10103265

P2093author name stringS M Barns
J A Davis
J Dunbar
C R Kuske
S Takala
P2860cites workNovel division level bacterial diversity in a Yellowstone hot springQ24520548
Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regionsQ24673732
Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencingQ24676254
Measurement of DiversityQ29303177
Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands).Q32097053
Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environmentQ33227324
Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments.Q34421172
Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradientsQ34434878
Detection and in situ identification of representatives of a widely distributed new bacterial phylumQ34435016
Genetic diversity in Sargasso Sea bacterioplanktonQ34540053
The RDP (Ribosomal Database Project).Q34624083
Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community.Q35188453
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCRQ35188832
A computer analysis of primer and probe hybridization potential with bacterial small-subunit rRNA sequences.Q35189207
Molecular microbial diversity of an agricultural soil in WisconsinQ35191058
Human colonic biota studied by ribosomal DNA sequence analysis.Q35191757
A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in natureQ35192090
Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteriaQ35196567
Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sampleQ35198559
Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNAQ35204470
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.Q35206063
Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific OceansQ35677017
Rapid method for direct extraction of DNA from soil and sedimentsQ35689144
Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sedimentQ36055603
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial speciesQ36688062
Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis.Q36775200
Biodiversity within hot spring microbial mat communities: molecular monitoring of enrichment culturesQ36848245
Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction.Q40202434
PCR amplification of long DNA fragmentsQ40411971
Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNAQ40537880
Differential amplification of rRNA genes by polymerase chain reactionQ41960113
The Nonconcept of Species Diversity: A Critique and Alternative ParametersQ49647437
Increased moth herbivory associated with environmental stress of pinyon pine at local and regional levels.Q52864974
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectbacterial communityQ129982151
P304page(s)1662-1669
P577publication date1999-04-01
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleLevels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
P478volume65

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cites work (P2860)
Q54774957A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils.
Q33436651Abundance, composition, diversity and novelty of soil Proteobacteria
Q30664283An advanced molecular strategy to identify bacterial communities on art objects
Q30744952An efficient strategy for screening large cloned libraries of amplified 16S rDNA sequences from complex environmental communities.
Q33464641An interlaboratory comparison of 16S rRNA gene-based terminal restriction fragment length polymorphism and sequencing methods for assessing microbial diversity of seafloor basalts
Q41684191Analysis of Bacterial Community Composition of Corroded Steel Immersed in Sanya and Xiamen Seawaters in China via Method of Illumina MiSeq Sequencing
Q30940958Application of a novel Paenibacillus-specific PCR-DGGE method and sequence analysis to assess the diversity of Paenibacillus spp. in the maize rhizosphere
Q46894665Assessment of microbial diversity bias associated with soil heterogeneity and sequencing resolution in pyrosequencing analyses.
Q30883506Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis
Q33884721Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays
Q33185617Bacteria associated with cysts of the soybean cyst nematode (Heterodera glycines).
Q37572470Bacterial community structure and diversity in a century-old manure-treated agroecosystem.
Q57279053Bacterial diversity and distribution in the southeast edge of the Tengger Desert and their correlation with soil enzyme activities
Q33283173Bacterial diversity associated with Blood Falls, a subglacial outflow from the Taylor Glacier, Antarctica
Q33497533Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us.
Q33276443Bacterial diversity in mine tailings compared by cultivation and cultivation-independent methods and their resistance to lead and cadmium
Q23914567Bacterial population dynamics in dairy waste during aerobic and anaerobic treatment and subsequent storage
Q33311713Bacterial population structure of the jute-retting environment
Q33498623Bacterioplankton community diversity in a maritime Antarctic lake, determined by culture-dependent and culture-independent techniques
Q21090989Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076
Q33855967Captured diversity in a culture collection: case study of the geographic and habitat distributions of environmental isolates held at the american type culture collection
Q46167293Carbon utilization profiles of bacteria colonizing the headbox water of two paper machines in a Canadian mill
Q36483096Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile.
Q34232149Characterization of microbial communities found in the human vagina by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes
Q33213774Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques
Q31108962Comparison of diversities and compositions of bacterial populations inhabiting natural forest soils
Q34051870Comparison of soil bacterial communities in rhizospheres of three plant species and the interspaces in an arid grassland
Q34527443Comparison of soil bacterial communities of Pinus patula of Nilgiris, western ghats with other biogeographically distant pine forest clone libraries
Q39098322Comparison of soil bacterial communities under diverse agricultural land management and crop production practices.
Q33982055Comparison of the rhizosphere bacterial communities of Zigongdongdou soybean and a high-methionine transgenic line of this cultivar
Q28535459Contribution of the microbial communities detected on an oil painting on canvas to its biodeterioration
Q33990368Counting the uncountable: statistical approaches to estimating microbial diversity
Q34872443Culture-independent investigation of the microbiome associated with the nematode Acrobeloides maximus
Q42111951Development and validation of a real-time PCR method to quantify rumen protozoa and examination of variability between entodinium populations in sheep offered a hay-based diet
Q54300337Diazotrophic diversity in the rhizosphere of two exotic weed plants, Prosopis juliflora and Parthenium hysterophorus.
Q24562766Discovery of the novel candidate phylum "Poribacteria" in marine sponges
Q33340518Distantly sampled soils carry few species in common.
Q37466064Diverse drug-resistant subpopulations of Mycobacterium tuberculosis are sustained in continuous culture
Q33194641Diversity and Abundance of Uncultured Cytophaga -Like Bacteria in the Delaware Estuary
Q33989506Diversity and seasonal fluctuations of the dominant members of the bacterial soil community in a wheat field as determined by cultivation and molecular methods
Q39030123Diversity of Microbial Carbohydrate-Active enZYmes (CAZYmes) Associated with Freshwater and Soil Samples from Caatinga Biome
Q39108178Diversity of basidiomycetes in michigan agricultural soils
Q39486731Effect of field inoculation with Sinorhizobium meliloti L33 on the composition of bacterial communities in rhizospheres of a target plant (Medicago sativa) and a non-target plant (Chenopodium album)-linking of 16S rRNA gene-based single-strand confo
Q33235509Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil
Q90062300Effects of Microbial Activity and Environmental Parameters on the Degradation of Extracellular Environmental DNA from a Eutrophic Lake
Q33299161Effects of plant biomass, plant diversity, and water content on bacterial communities in soil lysimeters: implications for the determinants of bacterial diversity
Q32122170Empirical and theoretical bacterial diversity in four Arizona soils
Q33504624Endophytic bacterial diversity in grapevine (Vitis vinifera L.) leaves described by 16S rRNA gene sequence analysis and length heterogeneity-PCR.
Q33293813Endophytic bacterial diversity in rice (Oryza sativa L.) roots estimated by 16S rDNA sequence analysis
Q36962408Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater
Q98158822Evaluation of PCR conditions for characterizing bacterial communities with full-length 16S rRNA genes using a portable nanopore sequencer
Q33224564Genetic diversity of small eukaryotes in lakes differing by their trophic status
Q30884829Heteroduplex mobility assay as a tool for predicting phylogenetic affiliation of environmental ribosomal RNA clones
Q34964096High bacterial diversity of biological soil crusts in water tracks over permafrost in the high arctic polar desert
Q34114910High-density microarray of small-subunit ribosomal DNA probes
Q33235504Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
Q35796030Illumina-based analysis of bacterial diversity related to halophytes Salicornia europaea and Sueada aralocaspica
Q33986730Increase in bacterial community diversity in subsurface aquifers receiving livestock wastewater input.
Q33753544Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria
Q35210060Influence of seasonal environmental variables on the distribution of presumptive fecal Coliforms around an Antarctic research station
Q31109015Integration of microbial ecology and statistics: a test to compare gene libraries
Q36372218Integron diversity in heavy-metal-contaminated mine tailings and inferences about integron evolution.
Q29614293Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
Q33239054Introducing TreeClimber, a test to compare microbial community structures
Q33200035Isolation and biodiversity of hitherto undescribed soil bacteria related to Bacillus niacini
Q24680896Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria
Q64085001Microbial Diversity and Antimicrobial Resistance Profile in Microbiota From Soils of Conventional and Organic Farming Systems
Q34185220Microbial and geochemical assessment of bauxitic un-mined and post-mined chronosequence soils from Mocho Mountains, Jamaica.
Q33185275Microbial biodiversity: approaches to experimental design and hypothesis testing in primary scientific literature from 1975 to 1999.
Q33674812Microbial community analysis in the roots of aquatic plants and isolation of novel microbes including an organism of the candidate phylum OP10.
Q84496284Microbial diversity and functional characterization of sediments from reservoirs of different trophic state
Q33199042Microbial diversity and heterogeneity in sandy subsurface soils
Q33990294Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment
Q34702640Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico
Q33224571Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site
Q43026355Microbiology and geochemistry of great boiling and mud hot springs in the United States Great Basin
Q36312048Mobile genetic elements in the bacterial phylum Acidobacteria
Q33194743Modeling bacterial species abundance from small community surveys
Q37572032Molecular analysis of geographic patterns of eukaryotic diversity in Antarctic soils
Q30821355Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus.
Q33283537Molecular approaches: advantages and artifacts in assessing bacterial diversity
Q33949852Monitoring complex bacterial communities using culture-independent molecular techniques: application to soil environment
Q30881146New primers for the class Actinobacteria: application to marine and terrestrial environments
Q35670476Novel Phenanthrene-Degrading Bacteria Identified by DNA-Stable Isotope Probing
Q29400627Phylogenetic Specificity and Reproducibility and New Method for Analysis of Terminal Restriction Fragment Profiles of 16S rRNA Genes from Bacterial Communities
Q33280754Phylogenetic diversity of gram-positive bacteria cultured from marine sediments
Q40960028Plant-fed versus chemicals-fed rhizobacteria of Lucerne: Plant-only teabags culture media not only increase culturability of rhizobacteria but also recover a previously uncultured Lysobacter sp., Novosphingobium sp. and Pedobacter sp
Q34720556Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities
Q31004958Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples
Q44074113RNA isolation from soil for bacterial community and functional analysis: evaluation of different extraction and soil conservation protocols
Q34114115Response of endophytic bacterial communities in potato plants to infection with Erwinia carotovora subsp. atroseptica
Q30399744Search and discovery strategies for biotechnology: the paradigm shift
Q31058423Seasonal changes in an alpine soil bacterial community in the colorado rocky mountains
Q33294856Seasonal variation of microbial populations and biomass in Tatachia grassland soils of Taiwan
Q33285808Serial analysis of rRNA genes and the unexpected dominance of rare members of microbial communities
Q33301548Simultaneous biodegradation of nitrogen-containing aromatic compounds in a sequencing batch bioreactor
Q64238024Soil Bacterial Communities From the Chilean Andean Highlands: Taxonomic Composition and Culturability
Q31119296Soil microbial community structure across a thermal gradient following a geothermal heating event
Q30790282Spatial and resource factors influencing high microbial diversity in soil
Q33239108Spatial stratification of soil bacterial populations in aggregates of diverse soils
Q35277580Spatiotemporal analysis of bacterial diversity in sediments of Sundarbans using parallel 16S rRNA gene tag sequencing
Q30855959Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis
Q35834948Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation.
Q33730368The Earth's bounty: assessing and accessing soil microbial diversity
Q39221913The Structure of Microbial Communities in Soil and the Lasting Impact of Cultivation
Q34061653The effect of resource islands on abundance and diversity of bacteria in arid soils.
Q33216317The metagenomics of soil
Q33332445The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
Q34248981The under-recognized dominance of Verrucomicrobia in soil bacterial communities
Q34939991Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils
Q21563510Toward a census of bacteria in soil
Q36186742Travel, sex, and food: what's speciation got to do with it?
Q30853129Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil

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