| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1036882977 |
| P356 | DOI | 10.1186/GB-2014-15-1-R18 |
| P932 | PMC publication ID | 4054095 |
| P698 | PubMed publication ID | 24451213 |
| P5875 | ResearchGate publication ID | 259876214 |
| P50 | author | Jonghyun Yun | Q87480576 |
| P2093 | author name string | Joshua T Mendell | |
| Yang Xie | |||
| Min Soo Kim | |||
| Beibei Chen | |||
| P2860 | cites work | Model-based analysis of ChIP-Seq (MACS) | Q21183902 |
| Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions | Q21184000 | ||
| HITS-CLIP: panoramic views of protein-RNA regulation in living cells | Q24594553 | ||
| CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins | Q24608128 | ||
| Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities | Q24617969 | ||
| Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain | Q24629850 | ||
| iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution | Q24630078 | ||
| Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data | Q24630613 | ||
| Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP | Q24630900 | ||
| Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps | Q24645826 | ||
| The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo | Q24646213 | ||
| HITS-CLIP yields genome-wide insights into brain alternative RNA processing | Q24648963 | ||
| Nova regulates GABA(A) receptor gamma2 alternative splicing via a distal downstream UCAU-rich intronic splicing enhancer | Q24683082 | ||
| The Sequence Alignment/Map format and SAMtools | Q27860966 | ||
| CLIP identifies Nova-regulated RNA networks in the brain | Q28184312 | ||
| The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia | Q28513858 | ||
| RNA processing and its regulation: global insights into biological networks | Q29615182 | ||
| Site identification in high-throughput RNA-protein interaction data | Q30528777 | ||
| Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data | Q31169616 | ||
| Nova autoregulation reveals dual functions in neuronal splicing | Q33841797 | ||
| PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data | Q33996053 | ||
| Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data | Q34356281 | ||
| A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing | Q34569331 | ||
| DGCR8 HITS-CLIP reveals novel functions for the Microprocessor | Q36233919 | ||
| An alternative mode of microRNA target recognition | Q36522819 | ||
| RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments | Q36783636 | ||
| Cell-free formation of RNA granules: bound RNAs identify features and components of cellular assemblies. | Q39349822 | ||
| RNA targets of wild-type and mutant FET family proteins | Q39603230 | ||
| Transcriptome-wide analysis of regulatory interactions of the RNA-binding protein HuR. | Q52894285 | ||
| P433 | issue | 1 | |
| P921 | main subject | data analysis | Q1988917 |
| P304 | page(s) | R18 | |
| P577 | publication date | 2014-01-22 | |
| P1433 | published in | Genome Biology | Q5533480 |
| P1476 | title | PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis | |
| P478 | volume | 15 |
| Q42674181 | 'Oming in on RNA-protein interactions |
| Q46272191 | Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7. |
| Q38666520 | Analysis of RNA-protein interactions in vertebrate embryos using UV crosslinking approaches. |
| Q31031522 | Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations |
| Q36194475 | AnnoLnc: a web server for systematically annotating novel human lncRNAs |
| Q37461459 | Antisense transcription licenses nascent transcripts to mediate transcriptional gene silencing |
| Q38881648 | Argonaute 2 Binds Directly to tRNA Genes and Promotes Gene Repression in cis. |
| Q31018288 | Assessing Computational Steps for CLIP-Seq Data Analysis |
| Q30991708 | BMix: probabilistic modeling of occurring substitutions in PAR-CLIP data |
| Q31150896 | Bioinformatic tools for analysis of CLIP ribonucleoprotein data |
| Q31140117 | CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data |
| Q54223780 | CLIP-related methodologies and their application to retrovirology. |
| Q38313487 | CLIP: viewing the RNA world from an RNA-protein interactome perspective. |
| Q36406286 | CLIPSeqTools--a novel bioinformatics CLIP-seq analysis suite. |
| Q57454245 | CLIPick: a sensitive peak caller for expression-based deconvolution of HITS-CLIP signals |
| Q91440857 | Clip for studying protein-RNA interactions that regulate virus replication |
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| Q59360212 | Computational analysis of ribonomics datasets identifies long non-coding RNA targets of γ-herpesviral miRNAs |
| Q38821616 | Computational and Experimental Identification of Tissue-Specific MicroRNA Targets. |
| Q35417365 | Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput |
| Q35770670 | Design and bioinformatics analysis of genome-wide CLIP experiments |
| Q47820506 | Dysregulation of spliceosome gene expression in advanced prostate cancer by RNA-binding protein PSF. |
| Q36256189 | From benchmarking HITS-CLIP peak detection programs to a new method for identification of miRNA-binding sites from Ago2-CLIP data |
| Q24490554 | Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo |
| Q47096901 | Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics |
| Q26769960 | Guardian of Genetic Messenger-RNA-Binding Proteins |
| Q51083187 | Illustrating the Epitranscriptome at Nucleotide Resolution Using Methylation-iCLIP (miCLIP). |
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| Q30833108 | Local synthesis of dynein cofactors matches retrograde transport to acutely changing demands |
| Q64078047 | Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons |
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| Q52334043 | Multiple nuclear-replicating viruses require the stress-induced protein ZC3H11A for efficient growth. |
| Q99241367 | Neuronal Transcriptome from C9orf72 Repeat Expanded Human Tissue is Associated with Loss of C9orf72 Function |
| Q38986620 | Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins |
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| Q42143384 | PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites |
| Q92697442 | PRAS: Predicting functional targets of RNA binding proteins based on CLIP-seq peaks |
| Q36609961 | Polypyrimidine tract binding protein 1 protects mRNAs from recognition by the nonsense-mediated mRNA decay pathway. |
| Q90348513 | Practical considerations on performing and analyzing CLIP-seq experiments to identify transcriptomic-wide RNA-protein interactions |
| Q47150528 | PureCLIP: capturing target-specific protein-RNA interaction footprints from single-nucleotide CLIP-seq data |
| Q36399385 | Recent computational developments on CLIP-seq data analysis and microRNA targeting implications. |
| Q38515219 | Revealing protein-lncRNA interaction |
| Q30886848 | Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data |
| Q38435553 | Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles. |
| Q36676439 | TauCstF-64 Mediates Correct mRNA Polyadenylation and Splicing of Activator and Repressor Isoforms of the Cyclic AMP-Responsive Element Modulator (CREM) in Mouse Testis. |
| Q42673064 | The RBPome: where the brains meet the brawn |
| Q26767339 | Tiny giants of gene regulation: experimental strategies for microRNA functional studies |
| Q58762009 | microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions |
| Q37182147 | rMAPS: RNA map analysis and plotting server for alternative exon regulation |
| Q55176453 | uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins. |
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