| scholarly article | Q13442814 |
| review article | Q7318358 |
| P50 | author | Elisa Ficarra | Q59550821 |
| P2093 | author name string | Paula H Reyes-Herrera | |
| P2860 | cites work | Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system | Q21092736 |
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| Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps | Q24645826 | ||
| HITS-CLIP yields genome-wide insights into brain alternative RNA processing | Q24648963 | ||
| TopHat: discovering splice junctions with RNA-Seq | Q24655505 | ||
| Using RNA secondary structures to guide sequence motif finding towards single-stranded regions | Q24682658 | ||
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| Site identification in high-throughput RNA-protein interaction data | Q30528777 | ||
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| PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis | Q30739562 | ||
| RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins | Q30985446 | ||
| Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. | Q31050056 | ||
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| The value of position-specific priors in motif discovery using MEME. | Q33551388 | ||
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| The function of proteins that interact with mRNA. | Q39656296 | ||
| In vivo UV-cross-linking hybridization: a powerful technique for isolating RNA binding proteins. Application to trypanosome mini-exon derived RNA. | Q40407233 | ||
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| RNA-binding proteins as regulators of gene expression. | Q41536276 | ||
| RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins | Q41880961 | ||
| Analysis of base-pairing probabilities of RNA molecules involved in protein-RNA interactions. | Q43529036 | ||
| A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins | Q45169446 | ||
| An RNA map predicting Nova-dependent splicing regulation | Q47600767 | ||
| Detecting regulatory sites using PhyloGibbs | Q48076543 | ||
| The effect of RNA secondary structures on RNA-ligand binding and the modifier RNA mechanism: a quantitative model. | Q51977693 | ||
| Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs | Q33741897 | ||
| GraphProt: modeling binding preferences of RNA-binding proteins. | Q33741982 | ||
| Learning the language of post-transcriptional gene regulation | Q33742097 | ||
| dCLIP: a computational approach for comparative CLIP-seq analyses | Q33742972 | ||
| RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing | Q33744637 | ||
| iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution. | Q33894575 | ||
| Updates to the RMAP short-read mapping software | Q33955092 | ||
| PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data | Q33996053 | ||
| Recent advances in RNA-protein recognition. | Q34141518 | ||
| RBPDB: a database of RNA-binding specificities | Q34147077 | ||
| Post-transcriptional RNA regulons affecting cell cycle and proliferation | Q34175183 | ||
| Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data | Q34356281 | ||
| A compendium of RNA-binding motifs for decoding gene regulation. | Q34357005 | ||
| Finding the right RNA: identification of cellular mRNA substrates for RNA-binding proteins | Q34362046 | ||
| Multi-disciplinary methods to define RNA-protein interactions and regulatory networks | Q34604891 | ||
| Finding the target sites of RNA-binding proteins | Q34617638 | ||
| RNA-binding proteins in plants: the tip of an iceberg? | Q34787041 | ||
| Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression | Q34832055 | ||
| Analysis of RNA motifs | Q35165221 | ||
| Repeat-associated non-AUG translation and its impact in neurodegenerative disease | Q35340115 | ||
| Post-transcriptional control of gene expression: a genome-wide perspective. | Q36212740 | ||
| Genome-wide approaches to dissect the roles of RNA binding proteins in translational control: implications for neurological diseases | Q36291543 | ||
| A selective review of RNA-protein interactions in eukaryotes | Q36582986 | ||
| A compendium of Caenorhabditis elegans RNA binding proteins predicts extensive regulation at multiple levels | Q36588985 | ||
| Developing global insight into RNA regulation | Q36768147 | ||
| Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes | Q36937064 | ||
| Post-transcriptional gene regulation: from genome-wide studies to principles | Q37017153 | ||
| Prediction of clustered RNA-binding protein motif sites in the mammalian genome. | Q37080345 | ||
| RNA immunoprecipitation for determining RNA-protein associations in vivo | Q37081216 | ||
| Informatic resources for identifying and annotating structural RNA motifs | Q37315545 | ||
| Role of plant RNA-binding proteins in development, stress response and genome organization. | Q37414800 | ||
| Emerging roles of RNA and RNA-binding protein network in cancer cells | Q37428161 | ||
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| Transcriptome-wide analysis of protein-RNA interactions using high-throughput sequencing. | Q37972715 | ||
| P921 | main subject | data processing | Q6661985 |
| P304 | page(s) | 199-207 | |
| P577 | publication date | 2014-10-01 | |
| P1433 | published in | Bioinformatics and Biology Insights | Q4914913 |
| P1476 | title | Computational Methods for CLIP-seq Data Processing | |
| P478 | volume | 8 |
| Q36391211 | A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq data |
| Q31031522 | Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations |
| Q35727554 | BackCLIP: a tool to identify common background presence in PAR-CLIP datasets |
| Q54223780 | CLIP-related methodologies and their application to retrovirology. |
| Q91440857 | Clip for studying protein-RNA interactions that regulate virus replication |
| Q35770670 | Design and bioinformatics analysis of genome-wide CLIP experiments |
| Q36347069 | Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors |
| Q38435553 | Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles. |
| Q26796990 | Specificity and nonspecificity in RNA-protein interactions |
| Q37032666 | Techniques and Approaches to Genetic Analyses in Nephrological Disorders |
| Q38578754 | The RNA world in the 21st century-a systems approach to finding non-coding keys to clinical questions. |
| Q36434925 | miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database |
| Q58553596 | omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data |
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