Force and twist dependence of RepC nicking activity on torsionally-constrained DNA molecules.

scientific article

Force and twist dependence of RepC nicking activity on torsionally-constrained DNA molecules. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKW689
P932PMC publication ID5062986
P698PubMed publication ID27488190

P50authorSanford H. LeubaQ55590607
Fernando Moreno-HerreroQ39997618
P2093author name stringSaleem A Khan
Carolina Carrasco
Cesar L Pastrana
Parvez Akhtar
P2860cites workDNA topoisomerases: structure, function, and mechanismQ22065417
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Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data.Q33659733
Initiation of rolling-circle replication in pT181 plasmid: initiator protein enhances cruciform extrusion at the originQ33878225
Eukaryotic topoisomerases recognize nucleic acid topology by preferentially interacting with DNA crossoversQ33923932
Replication-specific inactivation of the pT181 plasmid initiator proteinQ72593200
Role of individual monomers of a dimeric initiator protein in the initiation and termination of plasmid rolling circle replicationQ73731298
Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.Q43959489
Purification of pT181-encoded repC protein required for the initiation of plasmid replicationQ44447483
Torque and dynamics of linking number relaxation in stretched supercoiled DNA.Q46955285
Complete nucleotide sequence of pT181, a tetracycline-resistance plasmid from Staphylococcus aureusQ48395129
Role of the double-strand origin cruciform in pT181 replication.Q52544255
Friction and torque govern the relaxation of DNA supercoils by eukaryotic topoisomerase IB.Q54634087
Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.Q54642143
Directional Loading and Stimulation of PcrA Helicase by the Replication Initiator Protein RepDQ60363419
Mechanism of stimulation of DNA replication by bacteriophage phi 29 single-stranded DNA-binding protein p5Q64378486
Static and initiator protein-enhanced bending of DNA at a replication originQ69602022
Specificity of the interactions between the Rep proteins and the origins of replication of Staphylococcus aureus plasmids pT181 and pC221Q69705873
Use of site-specific recombination as a probe of DNA structure and metabolism in vivoQ70188170
Folded DNA in action: hairpin formation and biological functions in prokaryotes.Q34152536
The elasticity of a single supercoiled DNA moleculeQ34374724
Functional analysis of a palindromic sequence required for normal replication of several staphylococcal plasmidsQ34611752
Monomeric PcrA helicase processively unwinds plasmid lengths of DNA in the presence of the initiator protein RepD.Q34638456
Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acidsQ35160682
Replication of plasmid pT181 DNA in vitro: requirement for a plasmid-encoded productQ35459424
Extending the range for force calibration in magnetic tweezersQ35687172
Kinetic mechanism of initiation by RepD as a part of asymmetric, rolling circle plasmid unwinding.Q35924569
Plasmid rolling-circle replication: highlights of two decades of researchQ36057469
Cleavage of single-stranded DNA by plasmid pT181-encoded RepC proteinQ36127711
Rolling-circle replication of bacterial plasmids.Q36574388
Torsional directed walks, entropic elasticity, and DNA twist stiffnessQ36818468
14-3-3 cruciform-binding proteins as regulators of eukaryotic DNA replicationQ37022136
Sequence-specific interaction between the replication initiator protein of plasmid pT181 and its origin of replicationQ37391997
Action of nicking-closing enzyme on supercoiled and nonsupercoiled closed circular DNA: formation of a Boltzmann distribution of topological isomersQ37458662
The replication initiator protein of plasmid pT181 has sequence-specific endonuclease and topoisomerase-like activitiesQ37535537
Six amino acids determine the sequence-specific DNA binding and replication specificity of the initiator proteins of the pT181 familyQ38323750
In vitro studies of the initiation of staphylococcal plasmid replication. Specificity of RepD for its origin (oriD) and characterization of the Rep-ori tyrosyl ester intermediateQ38341298
Why is the initiation nick site of an AT-rich rolling circle plasmid at the tip of a GC-rich cruciform?Q38344216
Plasmid Rolling-Circle Replication.Q38536027
Structures of replication initiation proteins from staphylococcal antibiotic resistance plasmids reveal protein asymmetry and flexibility are necessary for replication.Q39142385
Replication and control of circular bacterial plasmids.Q39523346
The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoilingQ39719585
Winding of the DNA helix by divalent metal ionsQ39721482
DNA supercoiling and its effects on the structure of DNA.Q40201751
Preferential relaxation of positively supercoiled DNA by E. coli topoisomerase IV in single-molecule and ensemble measurements.Q40445428
Mechanism of replication and copy number control of plasmids in gram-positive bacteriaQ41094302
Specific and non-specific interactions of ParB with DNA: implications for chromosome segregationQ41967262
Plasmid rolling circle replication: identification of the RNA polymerase-directed primer RNA and requirement for DNA polymerase I for lagging strand synthesisQ42060307
Functional organization of the plasmid pT181 replication originQ43802201
P275copyright licenseCreative Commons Attribution-NonCommercial 4.0 InternationalQ34179348
P6216copyright statuscopyrightedQ50423863
P433issue18
P407language of work or nameEnglishQ1860
P304page(s)8885-8896
P577publication date2016-08-03
P1433published inNucleic Acids ResearchQ135122
P1476titleForce and twist dependence of RepC nicking activity on torsionally-constrained DNA molecules
P478volume44

Reverse relations

cites work (P2860)
Q92595521Dynamics of DNA nicking and unwinding by the RepC-PcrA complex
Q47135186The Different Faces of Rolling-Circle Replication and Its Multifunctional Initiator Proteins
Q55260326The TubR-centromere complex adopts a double-ring segrosome structure in Type III partition systems.
Q47145971The structural basis for dynamic DNA binding and bridging interactions which condense the bacterial centromere
Q48204242oriD structure controls RepD initiation during rolling-circle replication.

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