Replication and control of circular bacterial plasmids.

scientific article published on June 1998

Replication and control of circular bacterial plasmids. is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

External links are
P932PMC publication ID98921
P698PubMed publication ID9618448

P2093author name stringM Espinosa
G del Solar
R Díaz-Orejas
R Giraldo
M J Ruiz-Echevarría
P2860cites workReplication-specific inactivation of the pT181 plasmid initiator proteinQ72593200
Interaction of the plasmid R6K-encoded replication initiator protein with its binding sites on DNAQ72791834
A 27 kd protein of E. coli promotes antitermination of replication in vitro at a sequence-specific replication terminusQ72941314
Replication control of plasmid pLS1: the antisense RNA II and the compact rnaII region are involved in translational regulation of the initiator RepB synthesisQ73000064
Chaperone-mediated reduction of RepA dimerization is associated with RepA conformational changeQ73909173
Protein-DNA recognitionQ22065421
Linear plasmids and chromosomes in bacteriaQ22065693
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and EucaryaQ22066209
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteriaQ24604023
Copy-number of broad host-range plasmid R1162 is regulated by a small RNAQ24610378
RepR protein expression on plasmid pIP501 is controlled by an antisense RNA-mediated transcription attenuation mechanismQ24670620
Crystal structure of the replication terminator protein from B. subtilis at 2.6 AQ27730379
Structure of a replication-terminator protein complexed with DNAQ27733701
The leucine zipper: a hypothetical structure common to a new class of DNA binding proteinsQ27860587
pT181 plasmid replication is regulated by a countertranscript-driven transcriptional attenuatorQ28239146
Attenuation in amino acid biosynthetic operonsQ28262530
Copy number of the broad host-range plasmid R1162 is determined by the amounts of essential plasmid-encoded proteinsQ28284913
Prediction of protein secondary structure at better than 70% accuracyQ29547323
Characterization of a plasmid from Helicobacter pylori encoding a replication protein common to plasmids in Gram-positive bacteriaQ33301637
Plasmid RSF1010 DNA replicationin vitropromoted by purified RSF1010 RepA, RepB and RepC proteinsQ33339261
Enhancer-origin interaction in plasmid R6K involves a DNA loop mediated by initiator proteinQ68273726
Specificity of RepC protein in plasmid pT181 DNA replicationQ68708758
Multiple mechanisms for initiation of ColE1 DNA replication: DNA synthesis in the presence and absence of ribonuclease HQ69012389
Static and initiator protein-enhanced bending of DNA at a replication originQ69602022
DnaA protein binding to the plasmid origin region can substitute for primosome assembly during replication of pBR322 in vitroQ69687611
Specificity of the interactions between the Rep proteins and the origins of replication of Staphylococcus aureus plasmids pT181 and pC221Q69705873
RepB' is required in trans for the two single-strand DNA initiation signals in oriV of plasmid RSF1010Q69750265
Synthesis of single-stranded plasmid pT181 DNA in vitro. Initiation and termination of DNA replicationQ69936603
Replication of pBR322 DNA in vitro with purified proteins. Requirement for topoisomerase I in the maintenance of template specificityQ70093088
Conformational changes in a replication origin induced by an initiator proteinQ70117842
DNA-protein interaction at the origin of DNA replication of the plasmid pSC101Q70179300
Analysis of the trfA region of broad host-range plasmid RK2 by transposon mutagenesis and identification of polypeptide productsQ70214289
Initiation of plasmid pC194 replication and its control in Bacillus subtilisQ70374934
Molecular cloning of the replication terminus of the plasmid R6KQ70872031
An unusually long-lived antisense RNA in plasmid copy number control: in vivo RNAs encoded by the streptococcal plasmid pIP501Q70873299
Structural and functional analysis of the single-strand origin of replication from the lactococcal plasmid pWV01Q70874849
Gene transfer from bacteria to mammalian cellsQ71360369
Replication control of plasmid pLS1: efficient regulation of plasmid copy number is exerted by the combined action of two plasmid components, CopG and RNA IIQ71575660
Dissection of the core and auxiliary sequences in the vegetative replication origin of promiscuous plasmid RK2Q71588059
Control of replication of the Lactobacillus pentosus plasmid p353-2: evidence for a mechanism involving transcriptional attenuation of the gene coding for the replication proteinQ71613105
Change of a catalytic reaction carried out by a DNA replication proteinQ71669061
Control of plasmid replication: a synthesis occasioned by the recent EMBO Workshop "Replication of Prokaryotic DNA," held at de Eemhof, The Netherlands, May 1982 (organizers: Veltkamp and Weisbeek)Q71695292
Identification of a common fold in the replication terminator protein suggests a possible mode for DNA bindingQ72042010
Bidirectional replication from an internal origin in a linear streptomyces plasmidQ72112182
Lagging-strand origins of the promiscuous plasmid pMV158: physical and functional characterizationQ72144945
Localization of the start sites of lagging-strand replication of rolling-circle plasmids from gram-positive bacteriaQ72318972
Definition of oriR, the minimum DNA segment essential for initiation of R1 plasmid replication in vitroQ37510913
Protein RepC is involved in copy number control of the broad host range plasmid RSF1010.Q37532844
Absence of RNase H allows replication of pBR322 in Escherichia coli mutants lacking DNA polymerase IQ37580451
The replication initiator protein pi of the plasmid R6K specifically interacts with the host-encoded helicase DnaB.Q37591002
Regulatory regions of ColE1 that are involved in determination of plasmid copy numberQ37613175
A protein that binds to the P1 origin core and the oriC 13mer region in a methylation-specific fashion is the product of the host seqA geneQ37621716
Rolling-circle replication of the plasmid pKYM isolated from a gram-negative bacteriumQ37623672
Active site of the replication protein of the rolling circle plasmid pC194.Q37636400
Replication-specific conversion of the Staphylococcus aureus pT181 initiator protein from an active homodimer to an inactive heterodimerQ37638219
Plasmid pT181 replication is regulated by two countertranscriptsQ37676159
Termination of DNA replication in vitro: requirement for stereospecific interaction between two dimers of the replication terminator protein of Bacillus subtilis and with the terminator site to elicit polar contrahelicase and fork impedanceQ37694132
Three Escherichia coli heat shock proteins are required for P1 plasmid DNA replication: formation of an active complex between E. coli DnaJ protein and the P1 initiator proteinQ37732358
Control of plasmid replication--how do DNA iterons set the replication frequency?Q38012140
Partition-mediated incompatibility of bacterial plasmidsQ38141252
Recent studies on the control of plasmid replicationQ38186053
ColE1 replication control circuitry: sense from antisenseQ38195625
In vitro recognition of the replication origin of pLS1 and of plasmids of the pLS1 family by the RepB initiator proteinQ38288634
Determination of sequence specificity between a plasmid replication initiator protein and the origin of replicationQ38288873
Primer RNA synthesis by plasmid-specified Rep protein for initiation of ColE2 DNA replicationQ38290247
Excess intracellular concentration of the pSC101 RepA protein interferes with both plasmid DNA replication and partitioningQ38313815
Essentiality of the three carboxyl-terminal amino acids of the plasmid RK2 replication initiation protein TrfA for DNA binding and replication activity in gram-negative bacteriaQ38314118
Information analysis of sequences that bind the replication initiator RepA.Q38315904
Activation of DNA binding by the monomeric form of the P1 replication initiator RepA by heat shock proteins DnaJ and DnaK.Q38317649
Six amino acids determine the sequence-specific DNA binding and replication specificity of the initiator proteins of the pT181 familyQ38323750
Mapping of the in vivo start site for leading strand DNA synthesis in plasmid R1Q38324038
Cooperativity at a distance promoted by the combined action of two replication initiator proteins and a DNA bending protein at the replication origin of pSC101.Q38334049
Deletion analysis of the mini-P1 plasmid origin of replication and the role of Escherichia coli DnaA proteinQ38340064
Control of replication of plasmid R1: the duplex between the antisense RNA, CopA, and its target, CopT, is processed specifically in vivo and in vitro by RNase IIIQ38340311
In vitro studies of the initiation of staphylococcal plasmid replication. Specificity of RepD for its origin (oriD) and characterization of the Rep-ori tyrosyl ester intermediateQ38341298
Initiation of replication of plasmid pMV158: mechanisms of DNA strand-transfer reactions mediated by the initiator RepB proteinQ38345762
The inactive pT181 initiator heterodimer, RepC/C, binds but fails to induce melting of the plasmid replication originQ38350662
Modification of the plasmid initiator protein RepC active site during replicationQ38351101
Mechanisms of initiation and termination reactions in conjugative DNA processing. Independence of tight substrate binding and catalytic activity of relaxase (TraI) of IncPalpha plasmid RP4.Q38357475
Detection of DNA looping due to simultaneous interaction of a DNA-binding protein with two spatially separated binding sites on DNAQ33643024
Lagging-strand replication from the ssoA origin of plasmid pMV158 in Streptococcus pneumoniae: in vivo and in vitro influences of mutations in two conserved ssoA regions.Q33721895
tus, the trans-acting gene required for termination of DNA replication in Escherichia coli, encodes a DNA-binding proteinQ33840724
A host-encoded DNA-binding protein promotes termination of plasmid replication at a sequence-specific replication terminusQ33851981
Initiation of rolling-circle replication in pT181 plasmid: initiator protein enhances cruciform extrusion at the originQ33878225
Illegitimate recombination occurs between the replication origin of the plasmid pC194 and a progressing replication forkQ33881304
P1 plasmid replication requires methylated DNA.Q33929748
Control of pT181 replication I. The pT181 copy control function acts by inhibiting the synthesis of a replication protein.Q33939990
Control of pT181 replication II. Mutational analysis.Q33939995
Origin recognition specificity in pT181 plasmids is determined by a functionally asymmetric palindromic DNA element.Q34040351
The helix-turn-helix DNA binding motifQ34045093
DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machineQ34058015
Measurement of gene expression by translational coupling: effect of copy mutations on pT181 initiator synthesisQ34059890
Open-complex formation by the host initiator, DnaA, at the origin of P1 plasmid replicationQ34069162
Replication control of plasmid R1: RepA synthesis is regulated by CopA RNA through inhibition of leader peptide translationQ34249608
Roles of topoisomerase IV and DNA gyrase in DNA unlinking during replication in Escherichia coliQ34297971
Negative control of plasmid R6K replication: possible role of intermolecular coupling of replication originsQ34312512
Escherichia coli replication termination protein impedes the action of helicasesQ34321585
Control of P1 plasmid replication by iteronsQ34399153
Replication control of plasmid P1 and its host chromosome: the common ground.Q34428016
Initiator protein pi can bind independently to two domains of the gamma origin core of plasmid R6K: the direct repeats and the A+T-rich segmentQ34596064
Functional analysis of a palindromic sequence required for normal replication of several staphylococcal plasmidsQ34611752
Replication of mini-P1 plasmid DNA in vitro requires two initiation proteins, encoded by the repA gene of phage P1 and the dnaA gene of Escherichia coliQ34627054
RepA and DnaA proteins are required for initiation of R1 plasmid replication in vitro and interact with the oriR sequenceQ34638147
Initiation signals for the conversion of single stranded to double stranded DNA forms in the streptococcal plasmid pLS1.Q34692380
Control of ColE1 plasmid replication by antisense RNA.Q34854330
Origin of replication of colicin E1 plasmid DNAQ35026082
Origin of replication of pBR345 plasmid DNAQ35048004
Replication of colicin E1 plasmid DNA added to cell extractsQ35073535
Bidirectional replication of plasmid R6K DNA in Escherichia coli; correspondence between origin of replication and position of single-strand break in relaxed complexQ35084728
The nucleotide sequence surrounding the replication terminus of R6K.Q35341182
Replication of plasmid pT181 DNA in vitro: requirement for a plasmid-encoded productQ35459424
Arrest of bacterial DNA replicationQ35534717
Single-stranded plasmid DNA in Bacillus subtilis and Staphylococcus aureusQ35599903
P1 plasmid replication. Role of initiator titration in copy number controlQ41454629
Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distanceQ41519828
Replication of the streptococcal plasmid pMV158 and derivatives in cell-free extracts of Escherichia coli.Q41862701
Replication and incompatibility properties of plasmid pUB110 in Bacillus subtilisQ41913991
The E. coli cell cycle and the plasmid R1 replication cycle in the absence of the DnaA proteinQ42057261
Plasmid rolling circle replication: identification of the RNA polymerase-directed primer RNA and requirement for DNA polymerase I for lagging strand synthesisQ42060307
Complete nucleotide sequence of Birmingham IncP alpha plasmids. Compilation and comparative analysisQ42597254
The complete nucleotide sequence of a small cryptic plasmid from a rumen bacterium of the genus ButyrivibrioQ42619810
Nucleotide sequence and characterization of the broad-host-range lactococcal plasmid pWVO1Q42621264
Structural and functional organization of ColE2 and ColE3 repliconsQ42644371
Complete nucleotide sequence and gene organization of the broad-host-range plasmid RSF1010.Q42644411
Isolation and structure of the replicon of the promiscuous plasmid pCU1.Q42648371
Role of TrfA and DnaA proteins in origin opening during initiation of DNA replication of the broad host range plasmid RK2.Q42661197
Analysis of the halobacterial plasmid pHK2 minimal repliconQ42691350
Theta replication of the lactococcal plasmid pWVO2.Q42694149
Complete nucleotide sequences of Bacillus plasmids pUB110dB, pRBH1 and its copy mutantsQ43018671
The Staphylococcus aureus mutation pcrA3 leads to the accumulation of pT181 replication initiation complexesQ43757108
Roles of phi X174 type primosome- and G4 type primase-dependent primings in initiation of lagging and leading strand syntheses of DNA replicationQ43779984
Cre-lox recombination in Escherichia coli cells. Mechanistic differences from the in vitro reactionQ44251314
A replication initiator protein enhances the rate of hybrid formation between a silencer RNA and an activator RNA.Q44373396
Mini-P1 plasmid replication: the autoregulation-sequestration paradoxQ44412217
Purification of pT181-encoded repC protein required for the initiation of plasmid replicationQ44447483
In vivo definition of the functional origin of replication (ori(+)) of the promiscuous plasmid pLS1.Q44582374
Unique sequence requirements for the P1 plasmid replication originQ44843013
Two distinct mechanisms of synthesis of DNA fragments on colicin E1 plasmid DNAQ45154971
Leading strand synthesis of R1 plasmid replication in vitro is primed by primase alone at a specific site downstream of oriR.Q45963786
Replication origin of the broad host range plasmid RK2. Positioning of various motifs is critical for initiation of replication.Q45999258
The sequence encoding the 43-kilodalton trfA protein is required for efficient replication or maintenance of minimal RK2 replicons in Pseudomonas aeruginosaQ46441306
Isolation and characterization of DNA-binding mutants of a plasmid replication initiation protein utilizing an in vivo binding assayQ46625332
The role of topoisomerase IV in partitioning bacterial replicons and the structure of catenated intermediates in DNA replicationQ46625387
Isolation and characterization of pLS1 plasmid mutants with increased copy numbersQ48063159
Characterization of the Staphylococcus aureus chromosomal gene pcrA, identified by mutations affecting plasmid pT181 replicationQ48099560
Activation in vivo of the minimal replication origin beta of plasmid R6K requires a small target sequence essential for DNA loopingQ48175632
Identification of eleven single-strand initiation sequences (ssi) for priming of DNA replication in the F, R6K, R100 and ColE2 plasmidsQ48198332
Conformational changes induced by integration host factor at origin gamma of R6K and copy number controlQ48214428
Mutational and physiological analyses of plasmid pT181 functions expressing incompatibilityQ48279914
P1 plasmid replication requires Escherichia coli Dam-methylated DNA.Q48308314
Core sequence of two separable terminus sites of the R6K plasmid that exhibit polar inhibition of replication is a 20 bp inverted repeatQ48317635
Comparative analysis of five related Staphylococcal plasmidsQ48324751
A replication origin is turned off by an origin-"silencer" sequenceQ48355066
Replication of pSC101: effects of mutations in the E. coli DNA binding protein IHF.Q48363199
Analysis of the vegetative replication origin of broad-host-range plasmid RK2 by transposon mutagenesisQ48367900
Directly repeated, 20-bp sequence of plasmid R1162 DNA is required for replication, expression of incompatibility, and copy-number controlQ48370430
P1 plasmid replication: replicon structureQ48392040
Effects of point mutations on formation and structure of the RNA primer for ColE1 DNA replicationQ48393031
Structural properties of the beta origin of replication of plasmid R6K.Q48399016
A comparison of the origin of replication of pSa with R6KQ48400763
Plasmid R6K DNA replication. I. Complete nucleotide sequence of an autonomously replicating segmentQ48402522
Base pairing of RNA I with its complementary sequence in the primer precursor inhibits ColE1 replicationQ48407065
Nine unique repeating sequences in a region essential for replication and incompatibility of the mini-F plasmidQ48407667
Direct repeats of the F plasmid incC region express F incompatibilityQ48409396
Nucleotide sequence of the region of the origin of replication of the broad host range plasmid RK2.Q48411328
A leucine zipper motif determines different functions in a DNA replication proteinQ38361596
Genes involved in conjugative DNA processing of plasmid R6KQ38557119
The family of highly interrelated single-stranded deoxyribonucleic acid plasmidsQ38669585
Staphylococcal plasmids and their replicationQ38705491
Replication of plasmids in gram-negative bacteriaQ38733478
A model for initiation at origins of DNA replicationQ39256067
Single-stranded DNA phage originsQ39485983
Plasmid incompatibility.Q39694297
Structure and Replication of the Colicin E1 PlasmidQ39782437
Isolation and characterization of plasmid mutations that enable partitioning of pSC101 replicons lacking the partition (par) locusQ39835740
Host growth temperature and a conservative amino acid substitution in the replication protein of pPS10 influence plasmid host range.Q39837764
Boundaries of the pSC101 minimal replicon are conditionalQ39838077
Comparative analysis of the replicon regions of eleven ColE2-related plasmidsQ39899216
Minimal essential origin of plasmid pSC101 replication: requirement of a region downstream of iterons.Q39937002
The pSC101 par locus alters protein-DNA interactions in vivo at the plasmid replication originQ39937040
Characterization of a phage-plasmid hybrid (phasyl) with two independent origins of replication isolated from Escherichia coliQ39938712
Integration host factor of Escherichia coli reverses the inhibition of R6K plasmid replication by pi initiator proteinQ39939090
The phenotypes of temperature-sensitive mini-RK2 replicons carrying mutations in the replication control gene trfA are suppressed nonspecifically by intragenic cop mutationsQ39939554
Replication and segregational stability of Bacillus plasmid pBAA1Q39948095
Replication origins of single-stranded-DNA plasmid pUB110.Q39949285
RNase H and replication of ColE1 DNA in Escherichia coliQ39965250
Origin and direction of mini-R1 plasmid DNA replication in cell extracts of Escherichia coliQ39971580
Role of Nine Repeating Sequences of the Mini-F Genome for Expression of F-Specific Incompatibility Phenotype and Copy Number ControlQ39976326
Nucleotide sequence of an incompatibility region of mini-Rts1 that contains five direct repeats.Q39976776
Mutations in R Factors ofEscherichia coliCausing an Increased Number of R-Factor Copies per ChromosomeQ40098809
Control of replication of bacterial plasmids: Genetics, molecular biology, and physiology of the plasmid R1 systemQ40112314
Replication of the colicin E1 plasmid in extracts of Escherichia coli: Uncoupling of leading strand from lagging strand synthesisQ40290112
Bulged-out nucleotides protect an antisense RNA from RNase III cleavageQ40393036
Bulged-out nucleotides in an antisense RNA are required for rapid target RNA binding in vitro and inhibition in vivoQ40393044
Characterization of single strand origins of cryptic rolling-circle plasmids from Bacillus subtilisQ40393077
Effects of the pSC101 partition (par) locus on in vivo DNA supercoiling near the plasmid replication originQ40393160
The level of the pUB110 replication initiator protein is autoregulated, which provides an additional control for plasmid copy numberQ40394232
Characterization of the replication region of the Bacillus subtilis plasmid pLS20: a novel type of replicon.Q40395425
Specific binding of the replication protein of plasmid pPS10 to direct and inverted repeats is mediated by an HTH motifQ40397137
Functional difference between the two oppositely oriented priming signals essential for the initiation of the broad host-range plasmid RSF1010 DNA replicationQ40398756
The heat-shock DnaK protein is required for plasmid R1 replication and it is dispensable for plasmid ColE1 replicationQ40412737
The structure of the initiation complex at the replication origin, oriC, of Escherichia coliQ40412850
A base-paired hairpin structure essential for the functional priming signal for DNA replication of the broad host range plasmid RSF1010.Q40416696
The involvement of host replication proteins and of specific origin sequences in the in vitro replication of miniplasmid R1 DNAQ40417185
DnaA dependent replication of plasmid R1 occurs in the presence of point mutations that disrupt the dnaA box of oriR.Q40422409
Purification and characterization of RepA, a protein involved in the copy number control of plasmid pLS1.Q40448386
Plasmid rolling circle replication and its control.Q40468044
Discriminatory function of ribonuclease H in the selective initiation of plasmid DNA replicationQ40492742
Rifampicin-resistant initiation of DNA synthesis on the isolated strands of CoIE plasmid DNAQ40500167
Common sequence motifs in DNA relaxases and nick regions from a variety of DNA transfer systemsQ40504722
Roles of the G site and phi X174-type primosome assembly site in priming of leading-strand synthesis: initiation by a mobile primosome and replication-fork arrest by RepA protein bound to oriR.Q52225630
Control of mini-R1 plasmid replication: a computer simulation.Q52399890
Control of ColE2 plasmid replication: negative regulation of the expression of the plasmid-specified initiator protein, Rep, at a posttranscriptional step.Q52513371
Regulation of IncFII plasmid DNA replication. A quantitative model for control of plasmid NR1 replication in the bacterial cell division cycle.Q52618161
Transcription of repA, the gene of the initiation protein of the Pseudomonas plasmid pPS10, is autoregulated by interactions of the RepA protein at a symmetrical operator.Q54012553
Identification and analysis of genes for tetracycline resistance and replication functions in the broad-host-range plasmid pLS1.Q54142053
Isolation and characterization of a conditional replication mutant of the antibiotic resistance factor R1 affected in the gene of the replication protein repA.Q54354534
Binding of purified wild-type and mutant pi initiation proteins to a replication origin region of plasmid R6K.Q54433896
Plasmid R1 DNA replication dependent on protein synthesis in cell-free extracts of E. coli.Q54539871
Trans-complementable copy-number mutants of plasmid ColE1.Q54559090
Determination of specific DNA strand discontinuities with nucleotide resolution in exponentionally growing bacteria harboring rolling circle-replicating plasmids.Q54562104
Sequence requirements for the termination of rolling-circle replication of plasmid pT181.Q54566649
The ColE1 unidirectional origin acts as a polar replication fork pausing site.Q54580894
Three novel plasmid R6K proteins act in concert to distort DNA within the alpha and beta origins of DNA replication.Q54592490
Dissociation kinetics of RepA dimers: implications for mechanisms of activation of DNA binding by chaperones.Q54593988
The contrahelicase activities of the replication terminator proteins of Escherichia coli and Bacillus subtilis are helicase-specific and impede both helicase translocation and authentic DNA unwinding.Q54598519
The interaction of Escherichia coli topoisomerase IV with DNA.Q54601468
Multiple roles for DNA polymerase I in establishment and replication of the promiscuous plasmid pLS1.Q54624692
The copR gene product of plasmid pIP501 acts as a transcriptional repressor at the essential repR promoter.Q54625357
Control of ColE2 plasmid replication: regulation of Rep expression by a plasmid-coded antisense RNA.Q54630442
Topoisomerase IV can support oriC DNA replication in vitro.Q54632039
Host-inhibitory functions encoded by promiscuous plasmids. Transient arrest of Escherichia coli segregants that fail to inherit plasmid RK2.Q54637512
Functional features of oriV of the broad host range plasmid RSF1010 in Pseudomonas aeruginosa.Q54639121
Isolation and characterization of ClpX, a new ATP-dependent specificity component of the Clp protease of Escherichia coli.Q54649560
Autoregulation-deficient mutant of the plasmid R6K-encoded pi protein distinguishes between palindromic and nonpalindromic binding sites.Q54649687
Genetic and functional analysis of the basic replicon of pPS10, a plasmid specific for Pseudomonas isolated from Pseudomonas syringae patovar savastanoi.Q54684492
Structurally stable Bacillus subtilis cloning vectors.Q54716721
The replication terminator protein of E. coli is a DNA sequence-specific contra-helicase.Q54722403
Functionality of the dnaA protein binding site in DNA replication is orientation-dependent.Q54752888
DNA sequence analysis of host range mutants of the promiscuous IncP-1 plasmids R18 and R68 with Tn7 insertions in oriV.Q54763955
The integration host factor of Escherichia coli binds to bent DNA at the origin of replication of the plasmid pSC101.Q54764277
Regulation of mini-F plasmid DNA replication. A quantitative model for control of plasmid mini-F replication in the bacterial cell division cycle.Q54764975
Bacterial zipperQ59003148
Function of DnaJ and DnaK as chaperones in origin-specific DNA binding by RepAQ59066558
Specific Nicking-Closing Activity of the Initiator of Replication Protein RepB of Plasmid pMV158 on Supercoiled or Single-stranded DNAQ59261571
Replication of the promiscuous plasmid pLSI: a region encompassing the minus origin of replication is associated with stable plasmid inheritanceQ62019588
Initiation of replication of plasmid pLS1Q62019591
Monomer–dimer Equilibrium of the pSC101 RepA ProteinQ62372447
Computer-assisted dissection of rolling circle DNA replicationQ64389862
The replication initiator protein of plasmid R6K tagged with beta-galactosidase shows sequence-specific DNA-bindingQ67265285
Ribonucleotide-deoxyribonucleotide linkages at the origin of DNA replication of colicin E1 plasmidQ67319176
The copy number of plasmid pLS1 is regulated by two trans-acting plasmid products: the antisense RNA II and the repressor protein, RepAQ67531747
A mechanism of formation of a persistent hybrid between elongating RNA and template DNAQ67664935
Antisense RNAQ67698980
Specificity of origin recognition by replication initiator protein in plasmids of the pT181 family is determined by a six amino acid residue elementQ67729397
Differential inhibition of the DNA translocation and DNA unwinding activities of DNA helicases by the Escherichia coli Tus proteinQ67849287
Two alternative structures can be formed by IHF protein binding to the plasmid R6K gamma originQ67945546
Differential binding of wild-type and a mutant RepA protein to oriR sequence suggests a model for the initiation of plasmid R1 replicationQ67971013
Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi: evidence for rolling-circle replication in a hyperthermophileQ35608034
Host participation in plasmid maintenance: dependence upon dnaA of replicons derived from P1 and FQ35611641
An 18-base-pair sequence is sufficient for termination of rolling-circle replication of plasmid pT181Q35611818
In vitro inhibitory activity of RepC/C*, the inactivated form of the pT181 plasmid initiation protein, RepC.Q35618514
Prokaryotic DNA replicationQ35671078
The nucleotide sequence of replication and maintenance functions encoded by plasmid PSCl0lQ35685934
Conserved DNA structures in origins of replicationQ35833856
Identification of the origin and direction of replication of the broad-host-range plasmid pLS1.Q35940056
A molecular chaperone, ClpA, functions like DnaK and DnaJ.Q35968116
Plasmid pT181-linked suppressors of the Staphylococcus aureus pcrA3 chromosomal mutationQ36102250
Plasmids of the pT181 family show replication-specific initiator protein modificationQ36106912
Analysis of mutations in trfA, the replication initiation gene of the broad-host-range plasmid RK2Q36112681
Mutation in the plasmid pUB110 Rep protein affects termination of rolling circle replication.Q36121719
Evidence of two levels of control of P1 oriR and host oriC replication origins by DNA adenine methylationQ36124611
Cleavage of single-stranded DNA by plasmid pT181-encoded RepC proteinQ36127711
Critical sequences in the core of the P1 plasmid replication originQ36147487
DNA bending near the replication origin of IncFII plasmid NR1Q36173762
Nucleotide sequence analysis and expression of the minimum REPI replication region and incompatibility determinants of pColV-K30.Q36176084
Plasmid structural instability associated with pC194 replication functionsQ36176307
Region of the streptococcal plasmid pMV158 required for conjugative mobilizationQ36181454
DnaA protein is not essential for replication of IncFII plasmid NR1Q36182428
P1 plasmid replication: initiator sequestration is inadequate to explain control by initiator-binding sitesQ36210816
Gene organization in the region containing a new gene involved in chromosome partition in Escherichia coliQ36213780
Replication of the broad host range plasmid RSF1010: requirement for three plasmid-encoded proteinsQ36252887
A single DnaA box is sufficient for initiation from the P1 plasmid originQ36255044
Primary structure of the replication initiation protein of plasmid R6K.Q36311708
Plasmid ColE1 incompatibility determined by interaction of RNA I with primer transcriptQ36373617
Formation of an RNA primer for initiation of replication of ColE1 DNA by ribonuclease HQ36386816
Expression of a DNA strand initiation sequence of ColE1 plasmid in a single-stranded DNA phageQ36415041
Replication of the nonconjugative plasmid RSF1010 in Escherichia coli K-12Q36461608
Dissecting the functional role of PriA protein-catalysed primosome assembly in Escherichia coli DNA replicationQ36467595
Decatenation activity of topoisomerase IV during oriC and pBR322 DNA replication in vitroQ36540037
Rolling-circle replication of bacterial plasmids.Q36574388
Specific cleavage of chromosomal and plasmid DNA strands in gram-positive and gram-negative bacteria can be detected with nucleotide resolutionQ36657355
A fourth class of theta-replicating plasmids: the pAM beta 1 family from gram-positive bacteria.Q36720247
Mechanism of protein remodeling by ClpA chaperoneQ36762714
Replication of single-stranded plasmid pT181 DNA in vitroQ36769248
Uncoupling of the DNA topoisomerase and replication activities of an initiator protein.Q36937061
Structural and functional analysis of a replication enhancer: separation of the enhancer activity from origin function by mutational dissection of the replication origin gamma of plasmid R6KQ37043301
Monomers and dimers of the RepA protein in plasmid pSC101 replication: domains in RepAQ37214602
Structure of the ColE1 DNA molecule before segregation to daughter moleculesQ37268446
Protein-priming of DNA replicationQ37285250
Nucleotide sequence of the region of an origin of replication of the antibiotic resistance plasmid R6KQ37319954
Functional division and reconstruction of a plasmid replication origin: molecular dissection of the oriV of the broad-host-range plasmid RSF1010Q37362075
Sequence-specific interaction between the replication initiator protein of plasmid pT181 and its origin of replicationQ37391997
Positive and negative roles of an initiator protein at an origin of replicationQ37412117
Replication of Colicin E1 Plasmid DNA in Cell Extracts. Origin and Direction of ReplicationQ37447398
Molecular analysis of the replication region of the conjugative Streptococcus agalactiae plasmid pIP501 in Bacillus subtilis. Comparison with plasmids pAM beta 1 and pSM19035Q40522488
Gene F of plasmid RSF1010 codes for a low-molecular-weight repressor protein that autoregulates expression of the repAC operonQ40525452
Similarity of minus origins of replication and flanking open reading frames of plasmids pUB110, pTB913 and pMV158.Q40537469
Functional analysis of the leading strand replication origin of plasmid pUB110 in Bacillus subtilisQ40555922
Antisense RNA control in bacteria, phages, and plasmidsQ40573014
Replication arrestQ40599662
Processes at the nick region link conjugation, T-DNA transfer and rolling circle replicationQ40637095
Regulation of replication of an iteron-containing DNA moleculeQ40639080
Kinetic aspects of control of plasmid replication by antisense RNA.Q40682089
Antisense RNA-mediated transcriptional attenuation occurs faster than stable antisense/target RNA pairing: an in vitro study of plasmid pIP501Q40792752
Primosome assembly site in Bacillus subtilisQ40806967
Replication of plasmid pSC101 inEscherichia coli K12: Requirement fordnaA functionQ40831542
Rolling circle-replicating plasmids from gram-positive and gram-negative bacteria: a wall falls.Q40836977
Isolation and characterization of the minimal fragment required for autonomous replication (“Basic replicon”) of a copy mutant (pKN102) of the antibiotic resistance factor R1Q40913723
Activity of the replication terminus of plasmid R6K in hybrid replicons in Escherichia coliQ40957759
A runaway-replication mutant of plasmid R1drd-19: Temperature-dependent loss of copy number controlQ40982761
Unidirectional theta replication of the structurally stable Enterococcus faecalis plasmid pAM beta 1.Q41081761
Mechanism of replication and copy number control of plasmids in gram-positive bacteriaQ41094302
A novel replicon occurring naturally in Escherichia coli is a phage-plasmid hybridQ41095349
DNA replication of IncQ broad-host-range plasmids in gram-negative bacteriaQ41195864
Rolling circle replication of single-stranded DNA plasmid pC194.Q41358042
A two-stage molecular model for control of mini-F replicationQ41360999
P433issue2
P407language of work or nameEnglishQ1860
P304page(s)434-464
P577publication date1998-06-01
P1433published inMicrobiology and Molecular Biology ReviewsQ6839270
P1476titleReplication and control of circular bacterial plasmids
P478volume62

Reverse relations

cites work (P2860)
Q3560204355.2, a phage T4 ORFan gene, encodes an inhibitor of Escherichia coli topoisomerase I and increases phage fitness
Q35946761A Bacillus anthracis-based in vitro system supports replication of plasmid pXO2 as well as rolling-circle-replicating plasmids
Q89483087A Dual-Replicon Shuttle Vector System for Heterologous Gene Expression in a Broad Range of Gram-Positive and Gram-Negative Bacteria
Q37717881A New Broad Range Plasmid for DNA Delivery in Eukaryotic Cells Using Lactic Acid Bacteria: In Vitro and In Vivo Assays
Q58797128A Post-segregational Killing Mechanism for Maintaining Plasmid PMF1 in Its Host
Q39685412A cis-acting element that directs circular adeno-associated virus replication and packaging
Q42029317A dnaC mutation in Escherichia coli that affects copy number of ColE1-like plasmids and the PriA-PriB (but not Rep-PriC) pathway of chromosomal replication restart
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Q64387298A new role for Escherichia coli Dam DNA methylase in prevention of aberrant chromosomal replication
Q34508871A novel FtsZ-like protein is involved in replication of the anthrax toxin-encoding pXO1 plasmid in Bacillus anthracis
Q35535622A novel erythromycin resistance plasmid from Bacillus sp. strain HS24, isolated from the marine sponge Haliclona simulans
Q56895492A novel method for transforming the thermophilic bacterium Geobacillus kaustophilus
Q38648472A versatile one-step CRISPR-Cas9 based approach to plasmid-curing.
Q64115099Accessory genome of the multi-drug resistant ocular isolate of Pseudomonas aeruginosa PA34
Q34942357Acquisition through horizontal gene transfer of plasmid pSMA198 by Streptococcus macedonicus ACA-DC 198 points towards the dairy origin of the species
Q37181824Actinomycete integrative and conjugative elements
Q28492361Agrobacterium ParA/MinD-like VirC1 spatially coordinates early conjugative DNA transfer reactions
Q35223548An improved method for including upper size range plasmids in metamobilomes
Q35029204Analyzing DNA strand compositional asymmetry to identify candidate replication origins of Borrelia burgdorferi linear and circular plasmids
Q43182320Anatomy of the replication origin of plasmid ColE2-P9.
Q35482661Archaeal extrachromosomal genetic elements
Q64387692Atypical location of double-strand origin of replication (nic site) on the plasmid pGA1 from Corynebacterium glutamicum
Q42073502Autoregulation of the synthesis of the MobM relaxase encoded by the promiscuous plasmid pMV158.
Q43182291Autorepression of RctB, an initiator of Vibrio cholerae chromosome II replication
Q37096900Bacillus anthracis and Bacillus cereus PcrA helicases can support DNA unwinding and in vitro rolling-circle replication of plasmid pT181 of Staphylococcus aureus
Q34355915Breaking and joining single-stranded DNA: the HUH endonuclease superfamily
Q38221309Bringing them together: plasmid pMV158 rolling circle replication and conjugation under an evolutionary perspective.
Q42148640CRISPR adaptation biases explain preference for acquisition of foreign DNA
Q41461380Characterization and Comparative Overview of Complete Sequences of the First Plasmids of Pandoraea across Clinical and Non-clinical Strains
Q36136830Characterization of Mobile Staphylococcus equorum Plasmids Isolated from Fermented Seafood That Confer Lincomycin Resistance
Q64389557Characterization of a Cryptic Rolling-Circle Replication Plasmid pMK8 from Enterococcus durans 1-8
Q40209703Characterization of a Cryptic and Intriguing Low Molecular Weight Plasmid
Q39425140Characterization of a Rolling-Circle Replication Plasmid pM411 from Lactobacillus plantarum 1-3.
Q43024256Characterization of a cryptic plasmid from a Greenland ice core Arthrobacter isolate and construction of a shuttle vector that replicates in psychrophilic high G+C Gram-positive recipients
Q35038398Characterization of a cryptic plasmid pSM429 and its application for heterologous expression in psychrophilic Pseudoalteromonas
Q35073550Characterization of a novel plasmid, pMAH135, from Mycobacterium avium subsp. hominissuis
Q42599527Characterization of a rolling-circle replication plasmid pLR1 from Lactobacillus plantarum LR1.
Q34228239Characterization of a theta-type plasmid from Lactobacillus sakei: a potential basis for low-copy-number vectors in lactobacilli
Q37572309Characterization of plasmid pOR1 from Ornithobacterium rhinotracheale and construction of a shuttle plasmid.
Q34309708Characterization of plasmid pRT1 from Pyrococcus sp. strain JT1.
Q36710478Characterization of replication and conjugation of Streptomyces circular plasmids pFP1 and pFP11 and their ability to propagate in linear mode with artificially attached telomeres
Q39230593Characterization of the 16S-23S internal transcribed spacer among 34 higher plants: suitability for interspecific plastid transformation.
Q33718931Characterization of the basic replicon of Rhodococcus plasmid pSOX and development of a Rhodococcus-Escherichia coli shuttle vector.
Q33987612Characterization of the minimal replicon of a cryptic Deinococcus radiodurans SARK plasmid and development of versatile Escherichia coli-D. radiodurans shuttle vectors
Q37701725Characterization of the novel Fusobacterium nucleatum plasmid pKH9 and evidence of an addiction system.
Q39550877Characterization of the oriI and oriII origins of replication in phage-plasmid P4.
Q34348207Characterization of the putative replisome organizer of the lactococcal bacteriophage r1t
Q42863304Characterization of the replication region of plasmid pLS32 from the Natto strain of Bacillus subtilis
Q47807133Citrate, low pH and amino acid limitation induce citrate utilization in Lactococcus lactis biovar diacetylactis.
Q42634132Cloning and molecular characterization of a novel rolling-circle replicating plasmid, pK1S-1, from Bacillus thuringiensis subsp. kurstaki K1.
Q27015843Clostridium perfringens type A-E toxin plasmids
Q38659414Cnr interferes with dimerization of the replication protein alpha in phage-plasmid P4.
Q92081765Comparative Analysis of Listeria monocytogenes Plasmids and Expression Levels of Plasmid-Encoded Genes during Growth under Salt and Acid Stress Conditions
Q34010408Comparative biology of IncQ and IncQ-like plasmids
Q55405783Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats.
Q34474862Comparative genomics of bacteria in the genus Providencia isolated from wild Drosophila melanogaster
Q42144596Comparative transcription profiling and in-depth characterization of plasmid-based and plasmid-free Escherichia coli expression systems under production conditions
Q37484916Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide.
Q34008382Complete DNA sequence of Yersinia enterocolitica serotype 0:8 low-calcium-response plasmid reveals a new virulence plasmid-associated replicon
Q89920596Complete Genome of a Member of a New Bacterial Lineage in the Microgenomates Group Reveals an Unusual Nucleotide Composition Disparity Between Two Strands of DNA and Limited Metabolic Potential
Q34107881Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210(T) (= DSM 26640(T) = BS107(T)).
Q42646691Complete nucleotide sequence of pGS18, a 62.8-kb plasmid from Geobacillus stearothermophilus strain 18.
Q33855636Complete nucleotide sequence of the LE1 prophage from the spirochete Leptospira biflexa and characterization of its replication and partition functions
Q33988070Complete nucleotide sequence of ubiquitous plasmid pEA29 from Erwinia amylovora strain Ea88: gene organization and intraspecies variation
Q42624140Complete sequence and molecular characterization of pNB101, a rolling-circle replicating plasmid from the haloalkaliphilic archaeon Natronobacterium sp. strain AS7091.
Q42603247Complete sequence of plasmid pMP1 from the marine environmental Vibrio vulnificus and location of its replication origin
Q34232704Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment
Q37538155Conjugative plasmids: vessels of the communal gene pool
Q33711130Conserved small RNAs govern replication and incompatibility of a diverse new plasmid family from marine bacteria
Q42039738Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 for use as a platform strain for basic research and industrial biotechnology
Q51009910Construction of plasmid vectors for screening replicons from gram-positive bacteria and their use as shuttle cloning vectors.
Q22065745Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
Q39389337Copy number variability of expression plasmids determined by cell sorting and Droplet Digital PCR
Q86715507Core genome and plasmidome of the quorum-quenching bacterium Rhodococcus erythropolis
Q49408141Crosstalk between vertical and horizontal gene transfer: plasmid replication control by a conjugative relaxase
Q36540441Cryptic Streptococcus mutans 5.6-kb plasmids encode a toxin-antitoxin system for plasmid stabilization
Q42637956DNA translocation activity of the multifunctional replication protein ORF904 from the archaeal plasmid pRN1.
Q38667880DNA-DNA kissing complexes as a new tool for the assembly of DNA nanostructures
Q42000683Description of a 2,683-base-pair plasmid containing qnrD in two Providencia rettgeri isolates
Q92629393Detection and characterization of a theta-replicating plasmid pLP60 from Lactobacillus plantarum PC518 by inverse PCR
Q33808708Determination of plasmid copy number reveals the total plasmid DNA amount is greater than the chromosomal DNA amount in Bacillus thuringiensis YBT-1520
Q42432604Development of experimental genetic tools for Campylobacter fetus.
Q38293591Different pathways to acquiring resistance genes illustrated by the recent evolution of IncW plasmids.
Q39535195Directionality of lambda plasmid DNA replication carried out by the heritable replication complex
Q34474883Distribution and diversity of mycoplasma plasmids: lessons from cryptic genetic elements.
Q42909179Distribution and replication of the pathogenicity plasmid pPATH in diverse populations of the gall-forming bacterium Pantoea agglomerans.
Q41768140Distribution of minichromosomes in individual Escherichia coli cells: implications for replication control.
Q58547618DoriC 10.0: an updated database of replication origins in prokaryotic genomes including chromosomes and plasmids
Q88152130Dynamics in Copy Numbers of Five Plasmids of a Dairy Lactococcus lactis Strain under Dairy-Related Conditions Including Near-Zero Growth Rates
Q92595521Dynamics of DNA nicking and unwinding by the RepC-PcrA complex
Q36757670Effects of biofilm growth on plasmid copy number and expression of antibiotic resistance genes in Enterococcus faecalis
Q40420250Essentiality of the early transcript in the replication origin of the lactococcal prolate phage c2.
Q36825381Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance
Q33820219Fate and Persistence of a Pathogenic NDM-1-Positive Escherichia coli Strain in Anaerobic and Aerobic Sludge Microcosms
Q34152536Folded DNA in action: hairpin formation and biological functions in prokaryotes.
Q30822000Force and twist dependence of RepC nicking activity on torsionally-constrained DNA molecules.
Q33532792Frequency and diversity of small cryptic plasmids in the genus Rahnella
Q42737874Functional analysis of cis- and trans-acting replication factors of porcine circovirus type 1
Q35078452Functional characterization of the origin of replication of pRN1 from Sulfolobus islandicus REN1H1.
Q37405351Generation of a stable plasmid for in vitro and in vivo studies of Staphylococcus
Q33789784Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria
Q34107742Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment
Q37543617Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis
Q37544198Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements
Q37544221Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.).
Q52595412Genomic analysis of oral Campylobacter concisus strains identified a potential bacterial molecular marker associated with active Crohn's disease.
Q42134029Genomic comparison of archaeal conjugative plasmids from Sulfolobus
Q21266709Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae
Q34119622Genomic insights into bifidobacteria
Q39503136Genomic sequence and transcriptional analysis of a 23-kilobase mycobacterial linear plasmid: evidence for horizontal transfer and identification of plasmid maintenance systems
Q24681753Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum
Q35233714Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy
Q35087738Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome
Q33993372Identification and characterization of an active plasmid partition mechanism for the novel Lactococcus lactis plasmid pCI2000
Q37613008Identification of IncA/C Plasmid Replication and Maintenance Genes and Development of a Plasmid Multilocus Sequence Typing Scheme
Q42024565Identification of the origin of transfer (oriT) and DNA relaxase required for conjugation of the integrative and conjugative element ICEBs1 of Bacillus subtilis
Q41838691Identification, characterization and preliminary X-ray diffraction analysis of the rolling-circle replication initiator protein from plasmid pSTK1.
Q42121457Improved cloning vectors for bifidobacteria, based on the Bifidobacterium catenulatum pBC1 replicon
Q64056410In vivo continuous evolution of metabolic pathways for chemical production
Q39977166Interactions between horizontally acquired genes create a fitness cost in Pseudomonas aeruginosa
Q42854097Interactions between the RepB initiator protein of plasmid pMV158 and two distant DNA regions within the origin of replication.
Q41429543Interference-driven spacer acquisition is dominant over naive and primed adaptation in a native CRISPR-Cas system
Q37080816Is tRNA only a translation factor or also a regulator of other processes?
Q34075181Isolation and characterization of two novel plasmids from pathogenic Leptospira interrogans serogroup Canicola Serovar Canicola strain Gui44.
Q92340006Isolation and characterization of two novel plasmids pCYM01 and pCYM02 of Cylindrospermum stagnale
Q39708809Isolation and molecular characterization of pMG160, a mobilizable cryptic plasmid from Rhodobacter blasticus
Q40736906Isolation of a minireplicon of the plasmid pG6303 of Lactobacillus plantarum G63 and characterization of the plasmid-encoded Rep replication protein
Q36314786Iteron-binding ORF157 and FtsZ-like ORF156 proteins encoded by pBtoxis play a role in its replication in Bacillus thuringiensis subsp. israelensis
Q90074857Lactococcus Ceduovirus Phages Isolated from Industrial Dairy Plants-from Physiological to Genomic Analyses
Q41832400Lagging-strand DNA replication origins are required for conjugal transfer of the promiscuous plasmid pMV158.
Q58770602Large plasmidome of dairy Lactococcus lactis subsp. lactis biovar diacetylactis FM03P encodes technological functions and appears highly unstable
Q38257014Linking RNA polymerase backtracking to genome instability in E. coli
Q33968809Mapping of IS6110 insertion sites in two epidemic strains of Mycobacterium tuberculosis
Q27684327Mechanism of staphylococcal multiresistance plasmid replication origin assembly by the RepA protein
Q35636113Mechanisms of Theta Plasmid Replication.
Q30393789Metal-Induced Stabilization and Activation of Plasmid Replication Initiator RepB
Q35129905Minireplicon from pBtoxis of Bacillus thuringiensis subsp. israelensis
Q90697869Mobile Genetic Elements Associated with Antimicrobial Resistance
Q33399917Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5.
Q34980063Mobilizable Rolling-Circle Replicating Plasmids from Gram-Positive Bacteria: A Low-Cost Conjugative Transfer
Q28748298Modulation of ColE1-like plasmid replication for recombinant gene expression
Q39706000Modulation of pPS10 host range by plasmid-encoded RepA initiator protein
Q33261266Molecular characterization of a DNA fragment harboring the replicon of pBMB165 from Bacillus thuringiensis subsp. tenebrionis
Q39490456Molecular characterization of a theta replication plasmid and its use for development of a two-component food-grade cloning system for Lactococcus lactis
Q33855941Molecular characterization of plasmid pBM300 from Bacillus megaterium QM B1551.
Q36568723Molecular characterization of plasmid pMbo4.6 of Moraxella bovis ATCC 10900.
Q35220626Molecular characterization of the minimal replicon and the unidirectional theta replication of pSCM201 in extremely halophilic archaea
Q40183619Multi-platform analysis reveals a complex transcriptome architecture of a circovirus
Q39361858Multipartite regulation of rctB, the replication initiator gene of Vibrio cholerae chromosome II.
Q37336962Multiple consecutive initiation of replication producing novel brush-like intermediates at the termini of linear viral dsDNA genomes with hairpin ends
Q33864292Multiple homeostatic mechanisms in the control of P1 plasmid replication
Q39504886Multiple origins and replication proteins influence biological properties of beta-lactamase-producing plasmids from Neisseria gonorrhoeae
Q34538652Multireplicon genome architecture of Lactobacillus salivarius
Q36240751Networking in microbes: conjugative elements and plasmids in the genus Alteromonas
Q42024649New TEM-derived extended-spectrum beta-lactamase and its genomic context in plasmids from Salmonella enterica serovar derby isolates from Uruguay
Q30574660New quantitative methods for measuring plasmid loss rates reveal unexpected stability
Q35791186Nonviral DNA vectors for immunization and therapy: design and methods for their obtention
Q33674978Novel conjugative transferable multiple drug resistance plasmid pAQU1 from Photobacterium damselae subsp. damselae isolated from marine aquaculture environment.
Q28750505Nucleotide sequence analysis of the enterotoxigenic Escherichia coli Ent plasmid
Q40929147Ordering the bestiary of genetic elements transmissible by conjugation.
Q33783917Ordering the mob: Insights into replicon and MOB typing schemes from analysis of a curated dataset of publicly available plasmids
Q27322608Oscillations by minimal bacterial suicide circuits reveal hidden facets of host-circuit physiology
Q37348639Palindrome regeneration by template strand-switching mechanism at the origin of DNA replication of porcine circovirus via the rolling-circle melting-pot replication model
Q40259467Phage Lambda P protein: trans-activation, inhibition phenotypes and their suppression
Q91643707Piscirickettsia salmonis Cryptic Plasmids: Source of Mobile DNA and Virulence Factors
Q37398200Plasmid DNA vaccine vector design: impact on efficacy, safety and upstream production
Q40315196Plasmid Replicons from Pseudomonas Are Natural Chimeras of Functional, Exchangeable Modules
Q34732534Plasmid flux in Escherichia coli ST131 sublineages, analyzed by plasmid constellation network (PLACNET), a new method for plasmid reconstruction from whole genome sequences.
Q42152072Plasmid pP62BP1 isolated from an Arctic Psychrobacter sp. strain carries two highly homologous type II restriction-modification systems and a putative organic sulfate metabolism operon
Q38605696Plasmid stability analysis based on a new theoretical model employing stochastic simulations
Q34889716Plasmid-encoded MCP is involved in virulence, motility, and biofilm formation of Cronobacter sakazakii ATCC 29544.
Q35078208Plasmids are vectors for redundant chromosomal genes in the Bacillus cereus group
Q34480448Plasmids from Food Lactic Acid Bacteria: Diversity, Similarity, and New Developments
Q55400386Plasmids of Psychrotolerant Polaromonas spp. Isolated From Arctic and Antarctic Glaciers – Diversity and Role in Adaptation to Polar Environments.
Q35048912Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria) - structure, diversity and evolution
Q36845090Precise determination, cross-recognition, and functional analysis of the double-strand origins of the rolling-circle replication plasmids in haloarchaea
Q64093421Prevalence of Antibiotic and Heavy Metal Resistance Determinants and Virulence-Related Genetic Elements in Plasmids of Staphylococcus aureus.
Q35092008Properties and construction of plasmid pFW213, a shuttle vector with the oral Streptococcus origin of replication
Q42651088Protein domains and conformational changes in the activation of RepA, a DNA replication initiator
Q90629800Protein-Mediated and RNA-Based Origins of Replication of Extrachromosomal Mycobacterial Prophages
Q37052065Purification and characterization of the PcrA helicase of Bacillus anthracis
Q33521368Quantitative analysis of replication-related mutation and selection pressures in bacterial chromosomes and plasmids using generalised GC skew index
Q39647468R-loop-dependent rolling-circle replication and a new model for DNA concatemer resolution by mitochondrial plasmid mp1.
Q24629552Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes
Q33719322Rational Design of a Plasmid Origin That Replicates Efficiently in Both Gram-Positive and Gram-Negative Bacteria
Q37065183Real-time transposable element activity in individual live cells.
Q34421339Recombinant protein expression in Escherichia coli: advances and challenges
Q60953419Reconsidering plasmid maintenance factors for computational plasmid design
Q37156755Refinement of the Diatom Episome Maintenance Sequence and Improvement of Conjugation-Based DNA Delivery Methods
Q43587861RepA protein of the bacteriophage N15 exhibits activity of DNA helicase
Q33760204RepD-mediated recruitment of PcrA helicase at the Staphylococcus aureus pC221 plasmid replication origin, oriD.
Q58797330Replicate Once Per Cell Cycle: Replication Control of Secondary Chromosomes
Q34697498Replication control of staphylococcal multiresistance plasmid pSK41: an antisense RNA mediates dual-level regulation of Rep expression
Q33992053Replication mechanism and sequence analysis of the replicon of pAW63, a conjugative plasmid from Bacillus thuringiensis
Q35893427Replication of Enterococcus faecalis pheromone-responding plasmid pAD1: location of the minimal replicon and oriV site and RepA involvement in initiation of replication
Q47108095Replication of Staphylococcal Resistance Plasmids.
Q24651096Replication of porcine circoviruses
Q35153980Replication-induced transcription of an autorepressed gene: the replication initiator gene of plasmid P1.
Q90194804Reversed paired-gRNA plasmid cloning strategy for efficient genome editing in Escherichia coli
Q59126981Revised role for Hfq bacterial regulator on DNA topology
Q34351778Role of RepA and DnaA proteins in the opening of the origin of DNA replication of an IncB plasmid
Q35139140Role of high-fidelity Escherichia coli DNA polymerase I in replication bypass of a deoxyadenosine DNA-peptide cross-link
Q33788557Role of pi dimers in coupling ("handcuffing") of plasmid R6K's gamma ori iterons
Q35198337Roles of DNA polymerase I in leading and lagging-strand replication defined by a high-resolution mutation footprint of ColE1 plasmid replication
Q35075608Sequence analysis of the lactococcal plasmid pNP40: a mobile replicon for coping with environmental hazards
Q40387879Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C
Q33638407Sequence and organization of pXO1, the large Bacillus anthracis plasmid harboring the anthrax toxin genes
Q37055819Sequencing and Characterization of pBM400 from Bacillus megaterium QM B1551
Q42245919Sequencing of IncX-plasmids suggests ubiquity of mobile forms of a biofilm-promoting gene cassette recruited from Klebsiella pneumoniae
Q41512028Shared features of cryptic plasmids from environmental and pathogenic Francisella species
Q42706618Shuttle vector system for Methanococcus maripaludis with improved transformation efficiency
Q35857244Similarities between the DNA replication initiators of Gram-negative bacteria plasmids (RepA) and eukaryotes (Orc4p)/archaea (Cdc6p)
Q39503492Sinorhizobium meliloti plasmid pRm1132f replicates by a rolling-circle mechanism
Q35775653Skin-Derived C-Terminal Filaggrin-2 Fragments Are Pseudomonas aeruginosa-Directed Antimicrobials Targeting Bacterial Replication
Q21091147Sociobiological control of plasmid copy number in bacteria
Q42077667Specific interaction between the initiator protein (Rep) and origin of plasmid ColE2-P9.
Q42111488Spread of bla(CTX-M-14) is driven mainly by IncK plasmids disseminated among Escherichia coli phylogroups A, B1, and D in Spain.
Q48084430Spreading and mutability of Selenomonas ruminantium plasmids
Q39696404Stable co-existence of separate replicons in Escherichia coli is dependent on once-per-cell-cycle initiation.
Q24793980Stress responses and replication of plasmids in bacterial cells
Q27649027Structural basis for regulation of bifunctional roles in replication initiator protein
Q35055582Structural basis for replication origin unwinding by an initiator primase of plasmid ColE2-P9: duplex DNA unwinding by a single protein
Q97067540Structure and Evolution of Acinetobacter baumannii Plasmids
Q35879374Structure-based functional analysis of the replication protein of plasmid R6K: key amino acids at the pi/DNA interface
Q35130884Structure-specific DNA binding and bipolar helicase activities of PcrA.
Q39142385Structures of replication initiation proteins from staphylococcal antibiotic resistance plasmids reveal protein asymmetry and flexibility are necessary for replication.
Q90672397Synthetic control of plasmid replication enables target- and self-curing of vectors and expedites genome engineering of Pseudomonas putida
Q35304578Tales of conjugation and sex pheromones: A plasmid and enterococcal odyssey
Q47417619Targeted mutagenesis: A sniper-like diversity generator in microbial engineering
Q38052448The ABCs of plasmid replication and segregation.
Q91866717The Impact of Global Transcriptional Regulation on Bacterial Gene Order
Q33994686The LE1 bacteriophage replicates as a plasmid within Leptospira biflexa: construction of an L. biflexa-Escherichia coli shuttle vector
Q54980418The Prevalence and Evolutionary Conservation of Inverted Repeats in Proteobacteria.
Q50847770The Rep20 replication initiator from the pAG20 plasmid of Acetobacter aceti.
Q36661569The abundant extrachromosomal DNA content of the Spiroplasma citri GII3-3X genome
Q34699680The evolution of collective restraint: policing and obedience among non-conjugative plasmids
Q34048353The pCoo plasmid of enterotoxigenic Escherichia coli is a mosaic cointegrate
Q41188440The qacC Gene Has Recently Spread between Rolling Circle Plasmids of Staphylococcus, Indicative of a Novel Gene Transfer Mechanism
Q37149789The replication of plastid minicircles involves rolling circle intermediates
Q42867357The replication origin of a repABC plasmid.
Q41925891The tubulin-like RepX protein encoded by the pXO1 plasmid forms polymers in vivo in Bacillus anthracis
Q81499159The use of bacteriophages in eliminating polyresistant strains of Staphylococcus aureus and Streptococcus agalactiae
Q38311105Topoisomerase activity of the hyperthermophilic replication initiator protein Rep75.
Q36890396Toxin plasmids of Clostridium perfringens.
Q34779343Tracking F plasmid TraI relaxase processing reactions provides insight into F plasmid transfer
Q43953896Transcriptional analysis of the genetic elements involved in the lysogeny/lysis switch in the temperate lactococcal bacteriophage phiLC3, and identification of the Cro-like protein ORF76.
Q35033177Transcriptional inactivation of a regulatory site for replication of Vibrio cholerae chromosome II.
Q64091795Transfer of a mobile Staphylococcus saprophyticus plasmid isolated from fermented seafood that confers tetracycline resistance
Q41002530Tuning the transcription and translation of L-amino acid deaminase in Escherichia coli improves α-ketoisocaproate production from L-leucine
Q42121598Two different tetracycline resistance mechanisms, plasmid-carried tet(L) and chromosomally located transposon-associated tet(M), coexist in Lactobacillus sakei Rits 9.
Q33993248Two new early bacteriophage T4 genes, repEA and repEB, that are important for DNA replication initiated from origin E
Q33559437Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins
Q34082912Uncovering the prevalence and diversity of integrating conjugative elements in actinobacteria
Q99619624Universal whole-sequence-based plasmid typing and its utility to prediction of host range and epidemiological surveillance
Q36667300Use of a novel Escherichia coli-leuconostoc shuttle vector for metabolic engineering of Leuconostoc citreum to overproduce D-lactate
Q24805020pB264, a small, mobilizable, temperature sensitive plasmid from Rhodococcus
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