Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins

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Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins is …
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scholarly articleQ13442814

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P356DOI10.1093/NAR/GKQ236
P932PMC publication ID2926602
P698PubMed publication ID20403814
P5875ResearchGate publication ID43201194

P50authorHerman van TilbeurghQ28037088
Nicolas SolerQ56065933
Guennadi SezonovQ58323447
Nicole DesnouesQ68427956
P2093author name stringEvelyne Marguet
Patrick Forterre
Diego Cortez
Jenny Keller
P2860cites workThe ancient Virus World and evolution of cellsQ21093198
Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteriaQ21093370
MUSCLE: a multiple sequence alignment method with reduced time and space complexityQ21284290
Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the ArchaeaQ22065288
Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomesQ22065752
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead SeaQ22065753
Ten reasons to exclude viruses from the tree of lifeQ22121989
Analyzing genomes with cumulative skew diagramsQ24498116
Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphereQ24530217
Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new membersQ24812840
An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequencesQ24813150
Structure of a bifunctional DNA primase-polymeraseQ27642978
Crystal structure of SpoVT, the final modulator of gene expression during spore development in Bacillus subtilisQ27652826
A protein encoded by a new family of mobile elements from euryarchaea exhibits three domains with novel foldsQ27654347
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum LikelihoodQ27861000
The origin of viruses and their possible roles in major evolutionary transitionsQ28297214
From genomes to function: haloarchaea as model organismsQ28300154
Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the ThaumarchaeotaQ29618150
Asymmetric substitution patterns in the two DNA strands of bacteriaQ29618276
Structure and mechanism of helicases and nucleic acid translocasesQ29620151
Redefining viruses: lessons from MimivirusQ30048009
Molecular diversity of new Thermococcales isolates from a single area of hydrothermal deep-sea vents as revealed by randomly amplified polymorphic DNA fingerprinting and 16S rRNA gene sequence analysisQ30910575
On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transferQ33254239
Viruses of the Archaea: a unifying viewQ33260443
The rolling-circle plasmid pTN1 from the hyperthermophilic archaeon Thermococcus nautilusQ33296897
Identification and investigation of ORFans in the viral worldQ33315474
Displacement of cellular proteins by functional analogues from plasmids or viruses could explain puzzling phylogenies of many DNA informational proteinsQ33694025
Viral biogeography revealed by signatures in Sulfolobus islandicus genomes.Q52422288
Helicases: amino acid sequence comparisons and structure-function relationshipsQ56657141
A conserved 3'----5' exonuclease active site in prokaryotic and eukaryotic DNA polymerasesQ69747222
Molecular biology of the pRN1 plasmid from Sulfolobus islandicusQ83185628
Control of plasmid DNA replication by iterons: no longer paradoxicalQ33912684
Construction of a shuttle vector for, and spheroplast transformation of, the hyperthermophilic archaeon Pyrococcus abyssiQ34165738
Characterization of plasmid pRT1 from Pyrococcus sp. strain JT1.Q34309708
The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cellsQ34451193
Virus population dynamics and acquired virus resistance in natural microbial communitiesQ34780702
The origin of DNA genomes and DNA replication proteinsQ34921912
A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomesQ34987181
The origin of virusesQ34995069
Sequence of plasmid pGT5 from the archaeon Pyrococcus abyssi: evidence for rolling-circle replication in a hyperthermophileQ35608034
The replication protein of the Sulfolobus islandicus plasmid pRN1.Q35717448
Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerasesQ36070698
A cryptic miniplasmid from the hyperthermophilic bacterium Thermotoga sp. strain RQ7.Q36107358
Plasmids and viruses of the thermoacidophilic crenarchaeote SulfolobusQ36362454
Polarity in archaeal operon transcription in Thermococcus kodakaraensisQ36483701
Mechanisms of site-specific recombination.Q36498339
Shuttle vector expression in Thermococcus kodakaraensis: contributions of cis elements to protein synthesis in a hyperthermophilic archaeonQ36672660
The active site of the rolling circle replication protein Rep75 is involved in site-specific nuclease, ligase and nucleotidyl transferase activitiesQ38322584
A rolling circle replication initiator protein with a nucleotidyl-transferase activity encoded by the plasmid pGT5 from the hyperthermophilic archaeon Pyrococcus abyssiQ38338098
Thermostable and site-specific DNA binding of the gene product ORF56 from the Sulfolobus islandicus plasmid pRN1, a putative archael plasmid copy control proteinQ38658498
The protein ORF80 from the acidophilic and thermophilic archaeon Sulfolobus islandicus binds highly site-specifically to double-stranded DNA and represents a novel type of basic leucine zipper proteinQ39516125
Replication and control of circular bacterial plasmids.Q39523346
A novel type of replicative enzyme harbouring ATPase, primase and DNA polymerase activityQ39756128
Using the polymerase chain reaction to modify expression plasmids for epitope mapping.Q40449124
Novel RepA-MCM proteins encoded in plasmids pTAU4, pORA1 and pTIK4 from Sulfolobus neozealandicusQ41886114
Improved and versatile transformation system allowing multiple genetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensisQ41913560
Genomic comparison of archaeal conjugative plasmids from SulfolobusQ42134029
Characterization of the transcriptional activity of the cryptic plasmid pRN1 from Sulfolobus islandicus REN1H1 and regulation of its replication operonQ42182757
Small multicopy, non-integrative shuttle vectors based on the plasmid pRN1 for Sulfolobus acidocaldarius and Sulfolobus solfataricus, model organisms of the (cren-)archaeaQ42234411
The genetic element pSSVx of the extremely thermophilic crenarchaeon Sulfolobus is a hybrid between a plasmid and a virusQ42613854
Analysis of the first genome of a hyperthermophilic marine virus-like particle, PAV1, isolated from Pyrococcus abyssiQ42617881
DNA translocation activity of the multifunctional replication protein ORF904 from the archaeal plasmid pRN1.Q42637956
Evidence for the horizontal transfer of an integrase gene from a fusellovirus to a pRN-like plasmid within a single strain of Sulfolobus and the implications for plasmid survivalQ42643790
Two novel conjugative plasmids from a single strain of SulfolobusQ42689642
Production of recombinant and tagged proteins in the hyperthermophilic archaeon Sulfolobus solfataricus.Q43019254
Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2.Q43033575
Archaeal proviruses TKV4 and MVV extend the PRD1-adenovirus lineage to the phylum EuryarchaeotaQ45162308
Virus-like vesicles and extracellular DNA produced by hyperthermophilic archaea of the order ThermococcalesQ45393641
Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1.Q48072334
P275copyright licenseCreative Commons Attribution-NonCommercial 2.5 GenericQ19113746
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesCytoscapeQ3699942
P433issue15
P407language of work or nameEnglishQ1860
P921main subjectArchaeaQ10872
P304page(s)5088-5104
P577publication date2010-04-18
P1433published inNucleic Acids ResearchQ135122
P1476titleTwo novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins
P478volume38

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cites work (P2860)
Q34399126A highly divergent archaeo-eukaryotic primase from the Thermococcus nautilus plasmid, pTN2.
Q35482661Archaeal extrachromosomal genetic elements
Q42252104DNA topoisomerase VIII: a novel subfamily of type IIB topoisomerases encoded by free or integrated plasmids in Archaea and Bacteria.
Q38037563Darwin's goldmine is still open: variation and selection run the world
Q41710218Deep-sea vent phage DNA polymerase specifically initiates DNA synthesis in the absence of primers.
Q37079800Diversity of CRISPR systems in the euryarchaeal Pyrococcales
Q43017223Genetic studies on the virus-like regions in the genome of hyperthermophilic archaeon, Thermococcus kodakarensis
Q37669971Genome Sequence of a Hyperthermophilic Archaeon, Thermococcus nautili 30-1, That Produces Viral Vesicles
Q22061800Genomics of Bacterial and Archaeal Viruses: Dynamics within the Prokaryotic Virosphere
Q35084583Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea
Q21135343Haloquadratum walsbyi: limited diversity in a global pond
Q28829446High hydrostatic pressure adaptive strategies in an obligate piezophile Pyrococcus yayanosii
Q33931101Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi.
Q64388770Increase of positive supercoiling in a hyperthermophilic archaeon after UV irradiation
Q21560741Insights into dynamics of mobile genetic elements in hyperthermophilic environments from five new Thermococcus plasmids
Q40736906Isolation of a minireplicon of the plasmid pG6303 of Lactobacillus plantarum G63 and characterization of the plasmid-encoded Rep replication protein
Q42119400Living side by side with a virus: characterization of two novel plasmids from Thermococcus prieurii, a host for the spindle-shaped virus TPV1.
Q49336206Novel Families of Archaeo-Eukaryotic Primases Associated with Mobile Genetic Elements of Bacteria and Archaea.
Q89757050Pervasive suicidal integrases in deep-sea archaea
Q37832250Plasmids, viruses and virus-like membrane vesicles from Thermococcales.
Q38631160Provirus induction in hyperthermophilic archaea: characterization of Aeropyrum pernix spindle-shaped virus 1 and Aeropyrum pernix ovoid virus 1.
Q39560750Putative archaeal viruses from the mesopelagic ocean
Q38014378Rapid progress of DNA replication studies in Archaea, the third domain of life
Q42694593Synergistic template-free synthesis of dsDNA by Thermococcus nautili primase PolpTN2, DNA polymerase PolB, and pTN2 helicase
Q45361210TPV1, the first virus isolated from the hyperthermophilic genus Thermococcus
Q37718200The RNA- and DNA-targeting CRISPR-Cas immune systems of Pyrococcus furiosus
Q43021794The SF1 helicase encoded by the archaeal plasmid pTN2 of Thermococcus nautili.
Q37875200The archeoviruses
Q90019471The global distribution and evolutionary history of the pT26-2 archaeal plasmid family
Q26800168The universal tree of life: an update
Q90557522WASPS: web-assisted symbolic plasmid synteny server

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