Structural basis for regulation of bifunctional roles in replication initiator protein

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Structural basis for regulation of bifunctional roles in replication initiator protein is …
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scholarly articleQ13442814

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P819ADS bibcode2007PNAS..10418484N
P356DOI10.1073/PNAS.0705623104
P8608Fatcat IDrelease_5oso7wne3rf4pgjzdi77i5pgda
P3181OpenCitations bibliographic resource ID3238181
P932PMC publication ID2141803
P698PubMed publication ID18000058
P5875ResearchGate publication ID5847006

P50authorAkira NakamuraQ43125883
Kunio MikiQ87706568
P2093author name stringChieko Wada
P2860cites workCLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
Improved methods for building protein models in electron density maps and the location of errors in these modelsQ26776980
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Processing of X-ray diffraction data collected in oscillation modeQ26778468
Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 Å resolutionQ27619547
ESPript: analysis of multiple sequence alignments in PostScriptQ27860708
The CCP4 suite: programs for protein crystallographyQ27861090
Crystal structure of Escherichia coli MscS, a voltage-modulated and mechanosensitive channelQ28215839
Its substrate specificity characterizes the DnaJ co-chaperone as a scanning factor for the DnaK chaperone.Q28354756
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Interaction of the Hsp70 molecular chaperone, DnaK, with its cochaperone DnaJ.Q33574540
The winged-helix DNA-binding motif: another helix-turn-helix takeoffQ34354717
Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: combined structural, functional and phylogenetic perspectives.Q35066207
Replication initiator protein RepE of mini-F plasmid: functional differentiation between monomers (initiator) and dimers (autogenous repressor).Q35200597
Similarities between the DNA replication initiators of Gram-negative bacteria plasmids (RepA) and eukaryotes (Orc4p)/archaea (Cdc6p)Q35857244
Mechanism of regulation of hsp70 chaperones by DnaJ cochaperonesQ36351463
Expression and purification of F-plasmid RepE and preliminary X-ray crystallographic study of its complex with operator DNA.Q36580635
Substrate specificity of the DnaK chaperone determined by screening cellulose-bound peptide librariesQ36857677
Mini-F plasmid mutants able to replicate in Escherichia coli deficient in the DnaJ heat shock proteinQ38326277
A leucine zipper motif determines different functions in a DNA replication proteinQ38361596
Replication and control of circular bacterial plasmids.Q39523346
A review of mini-F plasmid maintenanceQ39828139
DNA-binding domain of the RepE initiator protein of mini-F plasmid: involvement of the carboxyl-terminal regionQ39836320
Site-specific proteolysis of mini-F plasmid replication protein RepE destroys initiator function and generates an incompatibility substanceQ39934029
Mini-F plasmid mutants able to replicate in the absence of sigma 32: mutations in the repE coding region producing hyperactive initiator proteinQ39938989
Regulation of DNA replication by iterons: an interaction between the ori2 and incC regions mediated by RepE-bound iterons inhibits DNA replication of mini-F plasmid in Escherichia coliQ42677439
The localized melting of mini-F origin by the combined action of the mini-F initiator protein (RepE) and HU and DnaA of Escherichia coliQ44029616
Interaction of the DnaK and DnaJ chaperone system with a native substrate, P1 RepA.Q44141092
Involvement of DnaK protein in mini-F plasmid replication: temperature-sensitive seg mutations are located in the dnaK geneQ44247750
Mechanism of the targeting action of DnaJ in the DnaK molecular chaperone systemQ44374505
A solution for the best rotation to relate two sets of vectorsQ45034417
The N-terminal domain of the replication initiator protein RepE is a dimerization domain forming a stable dimerQ47971555
Transcription of repA, the gene of the initiation protein of the Pseudomonas plasmid pPS10, is autoregulated by interactions of the RepA protein at a symmetrical operator.Q54012553
Secondary structure mapping of DnaK-bound protein fragments: chain helicity and local helix unwinding at the binding site.Q54454508
Plasmid P1 RepA is homologous to the F plasmid RepE class of initiators.Q54515038
Binding of RepE initiator protein to mini-F DNA origin (ori2). Enhancing effects of repE mutations and DnaJ heat shock proteinQ54677629
Roles of Escherichia coli heat shock proteins DnaK, DnaJ and GrpE in mini-F plasmid replication.Q54719572
Considerations for the refinement of low-resolution crystal structuresQ57000378
A conformational switch between transcriptional repression and replication initiation in the RepA dimerization domainQ73436980
The central region of RepE initiator protein of mini-F plasmid plays a crucial role in dimerization required for negative replication controlQ73940856
Oligomeric initiator protein-mediated DNA looping negatively regulates plasmid replication in vitro by preventing origin meltingQ81645016
P433issue47
P407language of work or nameEnglishQ1860
P304page(s)18484-9
P577publication date2007-11-20
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleStructural basis for regulation of bifunctional roles in replication initiator protein
P478volume104

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cites work (P2860)
Q43206442Binding of sulphonated indigo derivatives to RepA-WH1 inhibits DNA-induced protein amyloidogenesis
Q35604198Chaperone-assisted excisive recombination, a solitary role for DnaJ (Hsp40) chaperone in lysogeny escape
Q38359600Fluorescence studies of the replication initiator protein RepA in complex with operator and iteron sequences and free in solution.
Q34249622Initiator protein dimerization plays a key role in replication control of Vibrio cholerae chromosome 2
Q47711150Isolation and characterization of novel mutations in the pSC101 origin that increase copy number.
Q28067371Opening the Strands of Replication Origins-Still an Open Question
Q36950808Plasmid R6K replication control
Q58797330Replicate Once Per Cell Cycle: Replication Control of Secondary Chromosomes
Q26738704Replisome Assembly at Bacterial Chromosomes and Iteron Plasmids
Q64080681Structural analysis of a replication protein encoded by a plasmid isolated from a multiple sclerosis patient
Q35915633Structural and functional consequences of phosphate-arsenate substitutions in selected nucleotides: DNA, RNA, and ATP.
Q35055582Structural basis for replication origin unwinding by an initiator primase of plasmid ColE2-P9: duplex DNA unwinding by a single protein
Q30429318Structural insights into the chaperone activity of the 40-kDa heat shock protein DnaJ: binding and remodeling of a native substrate
Q33576044The DnaK Chaperone Uses Different Mechanisms To Promote and Inhibit Replication of Vibrio cholerae Chromosome 2.
Q33580258The replication initiator of the cholera pathogen's second chromosome shows structural similarity to plasmid initiators

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