scholarly article | Q13442814 |
review article | Q7318358 |
P50 | author | Rafael Giraldo | Q38319229 |
P2093 | author name string | Rafael Giraldo | |
P2860 | cites work | Orc6 involved in DNA replication, chromosome segregation, and cytokinesis. | Q34143699 |
Geminivirus DNA replication | Q34158717 | ||
Bacterial replication initiator DnaA. Rules for DnaA binding and roles of DnaA in origin unwinding and helicase loading | Q34187344 | ||
Composing life | Q34188557 | ||
Limiting DNA replication to once and only once | Q34192182 | ||
Understanding the enzymology of archaeal DNA replication: progress in form and function | Q34255371 | ||
Feedback controls restrain the initiation of Escherichia coli chromosomal replication. | Q34308964 | ||
Translation: in retrospect and prospect | Q34332282 | ||
Tubulin and FtsZ form a distinct family of GTPases | Q34471922 | ||
Regulation of origin recognition complex conformation and ATPase activity: differential effects of single-stranded and double-stranded DNA binding | Q34488663 | ||
Eukaryotic transcription factors | Q34525919 | ||
Archaeal DNA replication: spotlight on a rapidly moving field | Q34552203 | ||
Did DNA replication evolve twice independently? | Q34707188 | ||
Automated detection of remote homology | Q34749949 | ||
Dynamic remodeling of transcription complexes by molecular chaperones | Q34784636 | ||
The Cdc6p nucleotide-binding motif is required for loading mcm proteins onto chromatin | Q34812174 | ||
The bacterial replication initiator DnaA. DnaA and oriC, the bacterial mode to initiate DNA replication | Q34987457 | ||
The fission yeast homologue of Orc4p binds to replication origin DNA via multiple AT-hooks | Q35058094 | ||
Protein binding and unfolding by the chaperone ClpA and degradation by the protease ClpAP. | Q35190125 | ||
Replication initiator protein RepE of mini-F plasmid: functional differentiation between monomers (initiator) and dimers (autogenous repressor). | Q35200597 | ||
Translocation pathway of protein substrates in ClpAP protease. | Q35243928 | ||
Similarities between the DNA replication initiators of Gram-negative bacteria plasmids (RepA) and eukaryotes (Orc4p)/archaea (Cdc6p) | Q35857244 | ||
A molecular chaperone, ClpA, functions like DnaK and DnaJ. | Q35968116 | ||
The Orc4p and Orc5p subunits of the Xenopus and human origin recognition complex are related to Orc1p and Cdc6p | Q22008054 | ||
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya | Q22066209 | ||
The antiquity of RNA-based evolution | Q22122345 | ||
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools | Q24248165 | ||
Functional organization of the yeast proteome by systematic analysis of protein complexes | Q24292209 | ||
Human origin recognition complex large subunit is degraded by ubiquitin-mediated proteolysis after initiation of DNA replication | Q24293201 | ||
A DNA helicase activity is associated with an MCM4, -6, and -7 protein complex | Q24313590 | ||
Comparative genomics and evolution of proteins involved in RNA metabolism | Q24515041 | ||
On the evolution of cells | Q24530769 | ||
DnaA protein binding to individual DnaA boxes in the Escherichia coli replication origin, oriC. | Q24532816 | ||
The structure of a replication initiator unites diverse aspects of nucleic acid metabolism | Q24533482 | ||
Making sense of eukaryotic DNA replication origins | Q24535692 | ||
Origin pairing ('handcuffing') as a mode of negative control of P1 plasmid copy number | Q24536080 | ||
Processive DNA helicase activity of the minichromosome maintenance proteins 4, 6, and 7 complex requires forked DNA structures | Q24545600 | ||
Binding of cyclin-dependent kinases to ORC and Cdc6p regulates the chromosome replication cycle | Q24555189 | ||
Evolution of the first metabolic cycles | Q24559932 | ||
The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators | Q24563569 | ||
Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP | Q24606785 | ||
Horizontal gene transfer among genomes: the complexity hypothesis | Q24651300 | ||
Site-specific DNA binding of the Schizosaccharomyces pombe origin recognition complex is determined by the Orc4 subunit | Q34012854 | ||
Polymerases and the replisome: machines within machines. | Q34065994 | ||
About the last common ancestor, the universal life-tree and lateral gene transfer: a reappraisal | Q34078677 | ||
Human origin recognition complex binds to the region of the latent origin of DNA replication of Epstein-Barr virus | Q34081126 | ||
Cdc6 cooperates with Sic1 and Hct1 to inactivate mitotic cyclin-dependent kinases. | Q34084309 | ||
Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli | Q34085669 | ||
The origin of cellular life | Q34085683 | ||
The rotary mechanism of ATP synthase | Q34103409 | ||
Xenopus Mcm10 binds to origins of DNA replication after Mcm2-7 and stimulates origin binding of Cdc45. | Q34115837 | ||
The universal ancestor | Q24655363 | ||
Differential assembly of Cdc45p and DNA polymerases at early and late origins of DNA replication | Q24685710 | ||
Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 Å resolution | Q27619547 | ||
Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding | Q27621683 | ||
Structure of the 30S ribosomal subunit | Q27627261 | ||
Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control | Q27627450 | ||
Crystal structure of a DNA-dependent RNA polymerase (DNA primase) | Q27629111 | ||
Structure and mechanism of the RuvB Holliday junction branch migration motor | Q27633740 | ||
Prokaryotic origin of the actin cytoskeleton | Q27634702 | ||
Nucleotide-dependent conformational changes in a protease-associated ATPase HsIU | Q27636245 | ||
Crystal structures of two intermediates in the assembly of the papillomavirus replication initiation complex | Q27638318 | ||
Phage P4 origin-binding domain structure reveals a mechanism for regulation of DNA-binding activity by homo- and heterodimerization of winged helix proteins | Q27638712 | ||
Conserved structure for single-stranded telomeric DNA recognition | Q27638743 | ||
Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing | Q27639534 | ||
The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation | Q27639653 | ||
Crystal structure of trp repressor/operator complex at atomic resolution | Q27728594 | ||
The B2 element of the Saccharomyces cerevisiae ARS1 origin of replication requires specific sequences to facilitate pre-RC formation | Q27929960 | ||
Components and dynamics of DNA replication complexes in S. cerevisiae: redistribution of MCM proteins and Cdc45p during S phase | Q27930849 | ||
Coordinate binding of ATP and origin DNA regulates the ATPase activity of the origin recognition complex | Q27931631 | ||
Formation of a preinitiation complex by S-phase cyclin CDK-dependent loading of Cdc45p onto chromatin | Q27933399 | ||
Cdc6p-dependent loading of Mcm proteins onto pre-replicative chromatin in budding yeast | Q27936236 | ||
The DNA replication fork in eukaryotic cells. | Q27939216 | ||
Interdependent nuclear accumulation of budding yeast Cdt1 and Mcm2-7 during G1 phase. | Q27940280 | ||
MCM proteins in DNA replication | Q27976474 | ||
AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes | Q28131706 | ||
DNA replication in eukaryotic cells | Q28131747 | ||
Origin of life. Life as we don't know it | Q28138162 | ||
The Cdt1 protein is required to license DNA for replication in fission yeast | Q28141890 | ||
Subsets of human origin recognition complex (ORC) subunits are expressed in non-proliferating cells and associate with non-ORC proteins | Q28144369 | ||
Assembly of the human origin recognition complex | Q28185696 | ||
Architecture of the human origin recognition complex | Q28200779 | ||
Domain combinations in archaeal, eubacterial and eukaryotic proteomes | Q28203959 | ||
Cyclin-dependent kinases prevent DNA re-replication through multiple mechanisms | Q28204020 | ||
Insights into DNA replication from the third domain of life | Q36095530 | ||
Heat shock proteins DnaJ, DnaK, and GrpE stimulate P1 plasmid replication by promoting initiator binding to the origin | Q36101720 | ||
Identification and reconstitution of the origin recognition complex from Schizosaccharomyces pombe | Q36538083 | ||
Replicatively active complexes of DnaA protein and the Escherichia coli chromosomal origin observed in the electron microscope | Q36770059 | ||
The single minichromosome maintenance protein of Methanobacterium thermoautotrophicum DeltaH contains DNA helicase activity | Q36774428 | ||
The replication initiation protein of the broad-host-range plasmid RK2 is activated by the ClpX chaperone | Q36815340 | ||
A double-hexamer archaeal minichromosome maintenance protein is an ATP-dependent DNA helicase | Q37107587 | ||
DnaJ, DnaK, and GrpE heat shock proteins are required in oriP1 DNA replication solely at the RepA monomerization step | Q37276537 | ||
Monomerization of RepA dimers by heat shock proteins activates binding to DNA replication origin | Q37590548 | ||
A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidnece from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo | Q38292172 | ||
Interaction of the initiator protein DnaA of Escherichia coli with its DNA target | Q38293364 | ||
Genome-wide distribution of ORC and MCM proteins in S. cerevisiae: high-resolution mapping of replication origins. | Q38293922 | ||
Monomer/dimer ratios of replication protein modulate the DNA strand-opening in a replication origin | Q38303508 | ||
Activation of DNA binding by the monomeric form of the P1 replication initiator RepA by heat shock proteins DnaJ and DnaK. | Q38317649 | ||
ATP- and ADP-dnaA protein, a molecular switch in gene regulation. | Q38318935 | ||
Protein-DNA interactions at a yeast replication origin | Q38328826 | ||
Site-directed mutational analysis for the membrane binding of DnaA protein. Identification of amino acids involved in the functional interaction between DnaA protein and acidic phospholipids | Q38332214 | ||
Requirements for and regulation of origin opening of plasmid P1. | Q38333505 | ||
Site-directed mutational analysis for the ATP binding of DnaA protein. Functions of two conserved amino acids (Lys-178 and Asp-235) located in the ATP-binding domain of DnaA protein in vitro and in vivo. | Q38334670 | ||
Autophosphorylation of archaeal Cdc6 homologues is regulated by DNA. | Q39504873 | ||
The DnaC helicase loader is a dual ATP/ADP switch protein | Q39647456 | ||
Chaperone proteins abrogate inhibition of the human papillomavirus (HPV) E1 replicative helicase by the HPV E2 protein | Q39681443 | ||
DNA-binding domain of the RepE initiator protein of mini-F plasmid: involvement of the carboxyl-terminal region | Q39836320 | ||
Specific binding of the replication protein of plasmid pPS10 to direct and inverted repeats is mediated by an HTH motif | Q40397137 | ||
Acidic phospholipids with unsaturated fatty acids inhibit the binding of origin recognition complex to origin DNA. | Q40741051 | ||
The origin and early evolution of life: prebiotic chemistry, the pre-RNA world, and time. | Q41016426 | ||
Two steps to binding replication origins? DNA-protein interactions. | Q41110842 | ||
Protein quality control: triage by chaperones and proteases | Q41433862 | ||
Archaea and the Origin(s) of DNA Replication Proteins | Q41524701 | ||
Origin DNA-binding proteins | Q41728296 | ||
Negative control of DNA replication by hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coli | Q42120466 | ||
Protein domains and conformational changes in the activation of RepA, a DNA replication initiator | Q42651088 | ||
Prediction of the structure of the replication initiator protein DnaA. | Q42655710 | ||
Cdc18 transcription and proteolysis couple S phase to passage through mitosis | Q42655828 | ||
Role of TrfA and DnaA proteins in origin opening during initiation of DNA replication of the broad host range plasmid RK2. | Q42661197 | ||
Complexes at the replication origin of Bacillus subtilis with homologous and heterologous DnaA protein | Q42669406 | ||
Regulation of DNA replication by iterons: an interaction between the ori2 and incC regions mediated by RepE-bound iterons inhibits DNA replication of mini-F plasmid in Escherichia coli | Q42677439 | ||
Molecular mechanism for functional interaction between DnaA protein and acidic phospholipids: identification of important amino acids | Q43511068 | ||
DNA replication-coupled inactivation of DnaA protein in vitro: a role for DnaA arginine-334 of the AAA+ Box VIII motif in ATP hydrolysis | Q43579568 | ||
Mutational analysis of conserved sequence motifs in the budding yeast Cdc6 protein | Q43605563 | ||
Inhibitory module of Ets-1 allosterically regulates DNA binding through a dipole-facilitated phosphate contact | Q43786814 | ||
The localized melting of mini-F origin by the combined action of the mini-F initiator protein (RepE) and HU and DnaA of Escherichia coli | Q44029616 | ||
Human Hsp70 and Hsp40 chaperone proteins facilitate human papillomavirus-11 E1 protein binding to the origin and stimulate cell-free DNA replication | Q44770612 | ||
Activation of the herpes simplex virus type-1 origin-binding protein (UL9) by heat shock proteins | Q45734783 | ||
Allosteric effects of DNA on transcriptional regulators | Q46483901 | ||
Nucleotide-dependent prereplicative complex assembly by Cdc6p, a homolog of eukaryotic and prokaryotic clamp-loaders | Q47693928 | ||
Yeast origin recognition complex is involved in DNA replication and transcriptional silencing | Q48093039 | ||
Linkage of replication to start by the Cdk inhibitor Sic1. | Q51114804 | ||
Replication dynamics of the yeast genome. | Q52053905 | ||
Nucleosomes positioned by ORC facilitate the initiation of DNA replication. | Q52542122 | ||
The interaction domains of the DnaA and DnaB replication proteins of Escherichia coli. | Q52969912 | ||
Analysis of the DNA-binding domain of Escherichia coli DnaA protein. | Q52971588 | ||
Functional domains of DnaA proteins. | Q52975761 | ||
Transcription of repA, the gene of the initiation protein of the Pseudomonas plasmid pPS10, is autoregulated by interactions of the RepA protein at a symmetrical operator. | Q54012553 | ||
The DnaK chaperone system facilitates 30S ribosomal subunit assembly. | Q54540763 | ||
Cooperative action of Escherichia coli ClpB protein and DnaK chaperone in the activation of a replication initiation protein. | Q54549149 | ||
Conformational transition of DnaA protein by ATP: structural analysis of DnaA protein, the initiator of Escherichia coli chromosome replication. | Q54569361 | ||
Ordered and sequential binding of DnaA protein to oriC, the chromosomal origin of Escherichia coli. | Q54585074 | ||
Genetic and functional analysis of the basic replicon of pPS10, a plasmid specific for Pseudomonas isolated from Pseudomonas syringae patovar savastanoi. | Q54684492 | ||
Roles of Escherichia coli heat shock proteins DnaK, DnaJ and GrpE in mini-F plasmid replication. | Q54719572 | ||
Reconciling the many faces of lateral gene transfer. | Q55035590 | ||
Bacterial zipper | Q59003148 | ||
AAA+ superfamily ATPases: common structure--diverse function | Q28208908 | ||
Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication | Q28209282 | ||
The origin recognition complex: from simple origins to complex functions | Q28210087 | ||
Interactions between two catalytically distinct MCM subgroups are essential for coordinated ATP hydrolysis and DNA replication | Q28210357 | ||
Replication from oriP of Epstein-Barr virus requires human ORC and is inhibited by geminin | Q28213116 | ||
ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex | Q28241786 | ||
Mechanistic aspects of DnaA-RepA interaction as revealed by yeast forward and reverse two-hybrid analysis | Q28345862 | ||
Separate SCF(CDC4) recognition elements target Cdc6 for proteolysis in S phase and mitosis. | Q28348429 | ||
Mutations in DnaA protein suppress the growth arrest of acidic phospholipid-deficient Escherichia coli cells | Q28354843 | ||
Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA | Q28360242 | ||
AAA proteins: in search of a common molecular basis. International Meeting on Cellular Functions of AAA Proteins | Q28364398 | ||
Coupling of local folding to site-specific binding of proteins to DNA | Q29616464 | ||
Winged helix proteins | Q29617630 | ||
Whose end is destruction: cell division and the anaphase-promoting complex | Q29618257 | ||
Two steps in the assembly of complexes at yeast replication origins in vivo | Q29618323 | ||
Mcm2 is a target of regulation by Cdc7-Dbf4 during the initiation of DNA synthesis | Q29976898 | ||
SV40 large T antigen hexamer structure: domain organization and DNA-induced conformational changes | Q30309106 | ||
An overview of structural genomics. | Q30327582 | ||
Proteomics: a technology-driven and technology-limited discovery science | Q30668652 | ||
Search and retrieve. Large-scale data generation is becoming increasingly important in biological research. But how good are the tools to make sense of the data? | Q30690999 | ||
Clamp loaders and sliding clamps | Q31048743 | ||
Genome trees and the tree of life | Q31103613 | ||
Displacement of cellular proteins by functional analogues from plasmids or viruses could explain puzzling phylogenies of many DNA informational proteins | Q33694025 | ||
The nature of the last universal common ancestor | Q33801540 | ||
Horizontal gene transfer and the origin of species: lessons from bacteria. | Q33856631 | ||
Mechanistic studies of initiator-initiator interaction and replication initiation | Q33889438 | ||
Control of plasmid DNA replication by iterons: no longer paradoxical | Q33912684 | ||
ATPase switches controlling DNA replication initiation. | Q33912857 | ||
Ten commandments: lessons from the enzymology of DNA replication | Q33941332 | ||
In vivo interactions of archaeal Cdc6/Orc1 and minichromosome maintenance proteins with the replication origin | Q33944339 | ||
Searching for the common ancestor | Q33949864 | ||
The Schizosaccharomyces pombe origin recognition complex interacts with multiple AT-rich regions of the replication origin DNA by means of the AT-hook domains of the spOrc4 protein | Q33949872 | ||
Did evolution leap to create the protein universe? | Q33960336 | ||
Plasmid rolling-circle replication: recent developments | Q33994568 | ||
Phi29 family of phages | Q34010356 | ||
P433 | issue | 5 | |
P921 | main subject | Archaea | Q10872 |
phylogenetics | Q171184 | ||
P304 | page(s) | 533-554 | |
P577 | publication date | 2003-01-01 | |
P1433 | published in | FEMS Microbiology Reviews | Q15762226 |
P1476 | title | Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: combined structural, functional and phylogenetic perspectives | |
P478 | volume | 26 |
Q73436980 | A conformational switch between transcriptional repression and replication initiation in the RepA dimerization domain |
Q34233413 | AT-rich region and repeated sequences - the essential elements of replication origins of bacterial replicons. |
Q24633457 | ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA. |
Q34267329 | An Archaeal Chromosomal Autonomously Replicating Sequence Element from an Extreme Halophile,Halobacteriumsp. Strain NRC-1 |
Q41981022 | Architecture of bacterial replication initiation complexes: orisomes from four unrelated bacteria |
Q40068469 | Biochemical characterization of Cdc6/Orc1 binding to the replication origin of the euryarchaeon Methanothermobacter thermoautotrophicus |
Q45935318 | Biochemical characterization of a CDC6-like protein from the crenarchaeon Sulfolobus solfataricus. |
Q24540300 | Building a bacterial orisome: emergence of new regulatory features for replication origin unwinding |
Q37063932 | Characterization of the Cdc6 Homologues from the Euryarchaeon Thermoplasma acidophilum |
Q35105764 | Chromosome I controls chromosome II replication in Vibrio cholerae |
Q38500608 | Cluster of DnaA boxes involved in regulation of Streptomyces chromosome replication: from in silico to in vivo studies |
Q42679627 | Complete nucleotide sequence and genome analysis of bacteriophage BFK20--a lytic phage of the industrial producer Brevibacterium flavum |
Q42064722 | Conformation of a plasmid replication initiator protein affects its proteolysis by ClpXP system |
Q37538155 | Conjugative plasmids: vessels of the communal gene pool |
Q27641803 | Crystal structure of the SF3 helicase from adeno-associated virus type 2 |
Q41670228 | DNA binding by the Methanothermobacter thermautotrophicus Cdc6 protein is inhibited by the minichromosome maintenance helicase |
Q39305398 | DNA helicase activity is associated with the replication initiator protein rep of tomato yellow leaf curl geminivirus |
Q42637956 | DNA translocation activity of the multifunctional replication protein ORF904 from the archaeal plasmid pRN1. |
Q34414784 | Diversity and evolution of multiple orc/cdc6-adjacent replication origins in haloarchaea |
Q36616678 | Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution. |
Q33287225 | Essential and non-essential DNA replication genes in the model halophilic Archaeon, Halobacterium sp. NRC-1 |
Q33296535 | Fluorescence staining of live cyanobacterial cells suggest non-stringent chromosome segregation and absence of a connection between cytoplasmic and thylakoid membranes |
Q38359600 | Fluorescence studies of the replication initiator protein RepA in complex with operator and iteron sequences and free in solution. |
Q41016827 | Functional amyloids as inhibitors of plasmid DNA replication |
Q33284761 | Genetic evidence for a link between glycolysis and DNA replication |
Q33580338 | Handcuffing reversal is facilitated by proteases and replication initiator monomers |
Q46792925 | Identification of a soybean chloroplast DNA replication origin-binding protein |
Q21343029 | Identification of replication origins in archaeal genomes based on the Z-curve method |
Q43012651 | Initiation of DNA Replication |
Q24812763 | Interactions between the archaeal Cdc6 and MCM proteins modulate their biochemical properties |
Q28067371 | Opening the Strands of Replication Origins-Still an Open Question |
Q40898115 | Opposing effects of DNA on proteolysis of a replication initiator |
Q34107456 | Origin remodeling and opening in bacteria rely on distinct assembly states of the DnaA initiator |
Q34071679 | Phylogenetic and complementation analysis of a single-stranded DNA binding protein family from lactococcal phages indicates a non-bacterial origin |
Q35946244 | Plasmid replication initiator interactions with origin 13-mers and polymerase subunits contribute to strand-specific replisome assembly |
Q34976802 | Relationship among several key cell cycle events in the developmental cyanobacterium Anabaena sp. strain PCC 7120. |
Q33843099 | Sequence-specific interactions of Rep proteins with ssDNA in the AT-rich region of the plasmid replication origin |
Q42680996 | Structural analysis of the plasmid pTA1 isolated from the thermoacidophilic archaeon Thermoplasma acidophilum. |
Q41791841 | Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling |
Q27649027 | Structural basis for regulation of bifunctional roles in replication initiator protein |
Q42683055 | The DnaA homolog of the hyperthermophilic eubacterium Thermotoga maritima forms an open complex with a minimal 149-bp origin region in an ATP-dependent manner |
Q36672933 | The Methanothermobacter thermautotrophicus Cdc6-2 protein, the putative helicase loader, dissociates the minichromosome maintenance helicase |
Q36391613 | The chromosome replication machinery of the archaeon Sulfolobus solfataricus |
Q37213779 | The origin recognition complex protein family |
Q27651404 | The solution structure of the amino-terminal domain of human DNA polymerase subunit B is homologous to C-domains of AAA+ proteins |
Q36909365 | Thermoplasma acidophilum Cdc6 protein stimulates MCM helicase activity by regulating its ATPase activity |
Q41960283 | Topological characterization of the DnaA-oriC complex using single-molecule nanomanipuation. |
Q36852282 | Two discriminatory binding sites in the Escherichia coli replication origin are required for DNA strand opening by initiator DnaA-ATP. |
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