| review article | Q7318358 |
| scholarly article | Q13442814 |
| P50 | author | Burkhard Rost | Q4998995 |
| P2860 | cites work | An Olfactory Sensory Map in the Fly Brain | Q22808996 |
| The COG database: new developments in phylogenetic classification of proteins from complete genomes | Q24605347 | ||
| WormBase: network access to the genome and biology of Caenorhabditis elegans | Q24608819 | ||
| Protein structure prediction and structural genomics | Q28190526 | ||
| Intrinsically disordered protein | Q28191444 | ||
| Continuum secondary structure captures protein flexibility | Q28198150 | ||
| Domain combinations in archaeal, eubacterial and eukaryotic proteomes | Q28203959 | ||
| SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments | Q28212954 | ||
| Computational identification of noncoding RNAs in E. coli by comparative genomics | Q28216022 | ||
| A structural census of the current population of protein sequences | Q28252365 | ||
| Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure | Q29547343 | ||
| MIPS: a database for genomes and protein sequences | Q29614501 | ||
| Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm | Q29615865 | ||
| Sequence complexity of disordered protein | Q29616420 | ||
| On the total number of genes and their length distribution in complete microbial genomes | Q30002407 | ||
| Toward genomic identification of beta-barrel membrane proteins: composition and architecture of known structures | Q30167672 | ||
| Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network-based predictor | Q30168358 | ||
| beta-Barrel membrane proteins | Q30168767 | ||
| Methodologies for target selection in structural genomics. | Q30327431 | ||
| Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins. | Q30327615 | ||
| Evolution of function in protein superfamilies, from a structural perspective. | Q30328084 | ||
| Determination of protein function, evolution and interactions by structural genomics. | Q30328302 | ||
| Review: protein secondary structure prediction continues to rise. | Q30328632 | ||
| Fold predictions for bacterial genomes. | Q30328633 | ||
| Identification of homology in protein structure classification. | Q30329161 | ||
| Use of structure comparison methods for the refinement of protein structure predictions. I. Identifying the structural family of a protein from low-resolution models. | Q30329265 | ||
| EVA: continuous automatic evaluation of protein structure prediction servers. | Q30329275 | ||
| Evolutionary predictions of binding surfaces and interactions. | Q30329608 | ||
| Estimating the number of protein folds and families from complete genome data | Q30597194 | ||
| From complete genomes to measures of substitution rate variability within and between proteins | Q30651543 | ||
| Generating protein interaction maps from incomplete data: application to fold assignment | Q30657274 | ||
| Scale-free networks in biology: new insights into the fundamentals of evolution? | Q30809643 | ||
| HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins. | Q30894197 | ||
| From genome to function | Q31926469 | ||
| Predicting structures for genome proteins | Q33632684 | ||
| Finding function through structural genomics | Q33840238 | ||
| Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast | Q33939885 | ||
| Protein repeats: structures, functions, and evolution | Q33954617 | ||
| Small-molecule metabolism: an enzyme mosaic | Q33955985 | ||
| SCOP database in 2002: refinements accommodate structural genomics | Q33956534 | ||
| Intrinsic errors in genome annotation | Q34085839 | ||
| The evolution and structural anatomy of the small molecule metabolic pathways in Escherichia coli | Q34087867 | ||
| The geometry of domain combination in proteins | Q34111356 | ||
| Roles of partly unfolded conformations in macromolecular self-assembly | Q34135691 | ||
| Clustering and analysis of protein families | Q34282435 | ||
| Whole-genome analysis: annotations and updates | Q34282452 | ||
| iProClass: an integrated, comprehensive and annotated protein classification database | Q34317696 | ||
| Review: prediction of in vivo fates of proteins in the era of genomics and proteomics | Q34364809 | ||
| On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? | Q34364840 | ||
| Selecting protein targets for structural genomics of Pyrobaculum aerophilum: validating automated fold assignment methods by using binary hypothesis testing | Q35073856 | ||
| Genomic-scale comparison of sequence- and structure-based methods of function prediction: does structure provide additional insight? | Q36640679 | ||
| Comparing function and structure between entire proteomes | Q36640722 | ||
| A rapid classification protocol for the CATH Domain Database to support structural genomics | Q38661201 | ||
| CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins | Q38661398 | ||
| Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome | Q38668496 | ||
| PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information | Q38679170 | ||
| ProtoMap: automatic classification of protein sequences and hierarchy of protein families | Q39541528 | ||
| ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons | Q39541659 | ||
| Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels | Q40414224 | ||
| Functional versatility and molecular diversity of the metabolic map of Escherichia coli. | Q40415194 | ||
| Annotation transfer for genomics: measuring functional divergence in multi-domain proteins | Q40415523 | ||
| Enhanced functional annotation of protein sequences via the use of structural descriptors | Q43733364 | ||
| Distinct stages of protein evolution as suggested by protein sequence analysis | Q43776060 | ||
| An insight into domain combinations | Q47618084 | ||
| Structural genomics takes off. | Q47618828 | ||
| EUCLID: automatic classification of proteins in functional classes by their database annotations | Q47723073 | ||
| Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome. | Q48337100 | ||
| Target space for structural genomics revisited | Q48628364 | ||
| Picasso: generating a covering set of protein family profiles | Q48681779 | ||
| Variations on probabilistic suffix trees: statistical modeling and prediction of protein families | Q48686059 | ||
| A protein taxonomy based on secondary structure | Q48761596 | ||
| Predicting novel protein folds by using FRAGFOLD. | Q52046754 | ||
| Within the twilight zone: a sensitive profile-profile comparison tool based on information theory. | Q52047063 | ||
| The protein trinity--linking function and disorder. | Q52055900 | ||
| Completeness in structural genomics. | Q52062210 | ||
| GeneRAGE: a robust algorithm for sequence clustering and domain detection. | Q52077020 | ||
| An integrated approach for finding overlooked genes in yeast. | Q52126285 | ||
| Scale-free behavior in protein domain networks. | Q52590402 | ||
| Loopy proteins appear conserved in evolution. | Q52942751 | ||
| Modularity and homology: modelling of the titin type I modules and their interfaces | Q57950515 | ||
| A unifold, mesofold, and superfold model of protein fold use | Q57972079 | ||
| Protein structural alignments and functional genomics | Q73379973 | ||
| Practical limits of function prediction | Q74177429 | ||
| A conserved helix-unfolding motif in the naturally unfolded proteins | Q74308441 | ||
| Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model | Q77135232 | ||
| P433 | issue | 3 | |
| P921 | main subject | protein evolution | Q59870539 |
| P304 | page(s) | 409-416 | |
| P577 | publication date | 2002-06-01 | |
| P1433 | published in | Current Opinion in Structural Biology | Q15758416 |
| P1476 | title | Did evolution leap to create the protein universe? | |
| P478 | volume | 12 |
| Q35165240 | A structural perspective on genome evolution |
| Q43022016 | Cold-active enzymes studied by comparative molecular dynamics simulation |
| Q35066207 | Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: combined structural, functional and phylogenetic perspectives. |
| Q38376951 | Compressing proteomes: the relevance of medium range correlations |
| Q50761844 | Convergent evolution of domain architectures (is rare). |
| Q30377688 | Discrete-continuous duality of protein structure space. |
| Q34172787 | Domains, motifs and clusters in the protein universe |
| Q35739851 | Environmental Pressure May Change the Composition Protein Disorder in Prokaryotes |
| Q91742198 | Functional Proteomics of Nuclear Proteins in Tetrahymena thermophila: A Review |
| Q35645389 | Intra-chain 3D segment swapping spawns the evolution of new multidomain protein architectures |
| Q35159284 | PEP: Predictions for Entire Proteomes |
| Q24801216 | Progress towards mapping the universe of protein folds |
| Q30342175 | Sequence-based prediction of protein domains. |
| Q30354608 | Structural diversity of protein segments follows a power-law distribution |
| Q21089567 | The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families |
| Q44121413 | The Subsequence Composition of Polypeptides |
| Q27644846 | The helix turn helix motif as an ultrafast independently folding domain: The pathway of folding of Engrailed homeodomain |
| Q31118789 | The structure of the protein universe and genome evolution |
| Q35969988 | Touring protein space with Matt |
| Q33262935 | Tracing the origin of functional and conserved domains in the human proteome: implications for protein evolution at the modular level |
| Q33345772 | Unravelling the ORFan Puzzle |
| Q55053051 | Why genes overlap in viruses. |
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