| review article | Q7318358 |
| scholarly article | Q13442814 |
| P2093 | author name string | Revathy Ramachandran | |
| Dhruba K. Chattoraj | |||
| Jyoti K. Jha | |||
| P2860 | cites work | Histonelike proteins of bacteria | Q24634363 |
| The orisome: structure and function | Q26822618 | ||
| The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation | Q27639653 | ||
| Structural basis for regulation of bifunctional roles in replication initiator protein | Q27649027 | ||
| A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin | Q27649681 | ||
| DNA stretching by bacterial initiators promotes replication origin opening | Q27674672 | ||
| AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes | Q28131706 | ||
| Cyclin-dependent kinases prevent DNA re-replication through multiple mechanisms | Q28204020 | ||
| The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin | Q28254988 | ||
| Helicase loading at chromosomal origins of replication | Q28289537 | ||
| Strength in numbers: preventing rereplication via multiple mechanisms in eukaryotic cells | Q28291913 | ||
| Mechanistic aspects of DnaA-RepA interaction as revealed by yeast forward and reverse two-hybrid analysis | Q28345862 | ||
| Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA | Q28360242 | ||
| Supercoiling of the DNA template during transcription | Q29617503 | ||
| Breaking Cryo-EM Resolution Barriers to Facilitate Drug Discovery. | Q30780237 | ||
| Transcriptional activation of bacteriophage lambda DNA replication in vitro: regulatory role of histone-like protein HU of Escherichia coli | Q33573194 | ||
| The interaction of bacteriophage P2 B protein with Escherichia coli DnaB helicase | Q33803314 | ||
| Sequence-specific interactions of Rep proteins with ssDNA in the AT-rich region of the plasmid replication origin | Q33843099 | ||
| Mechanistic studies of initiator-initiator interaction and replication initiation | Q33889438 | ||
| Strand separation required for initiation of replication at the chromosomal origin of E.coli is facilitated by a distant RNA-DNA hybrid | Q33920987 | ||
| Position of branch points in replicating lambda DNA | Q71597204 | ||
| Physicochemical studies on polydeoxyribonucleotides containing defined repeating nucleotide sequences | Q71622711 | ||
| Mapping of Deletions and Substitutions in Heteroduplex DNA Molecules of Bacteriophage Lambda by Electron Microscopy | Q72338889 | ||
| Replication initiated at the origin (oriC) of the E. coli chromosome reconstituted with purified enzymes | Q72388927 | ||
| Specificity determinants for bacteriophage lambda DNA replication. III. Activation of replication in lambda ric mutants by transcription outside of ori | Q72754581 | ||
| A denaturation map of the lambda phage DNA molecule determined by electron microscopy | Q72916266 | ||
| A conformational switch between transcriptional repression and replication initiation in the RepA dimerization domain | Q73436980 | ||
| DnaA boxes in the P1 plasmid origin: the effect of their position on the directionality of replication and plasmid copy number | Q74070333 | ||
| Escherichia coli DnaA protein. The N-terminal domain and loading of DnaB helicase at the E. coli chromosomal origin | Q77677947 | ||
| Positioning and the specific sequence of each 13-mer motif are critical for activity of the plasmid RK2 replication origin | Q81064499 | ||
| Oligomeric initiator protein-mediated DNA looping negatively regulates plasmid replication in vitro by preventing origin melting | Q81645016 | ||
| Replication origin of the broad host range plasmid RK2. Positioning of various motifs is critical for initiation of replication. | Q45999258 | ||
| Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family. | Q46497050 | ||
| Role of DNA superhelicity in partitioning of the pSC101 plasmid | Q46657269 | ||
| SeqA: a negative modulator of replication initiation in E. coli | Q48082693 | ||
| The sequence requirements for a functional Escherichia coli replication origin are different for the chromosome and a minichromosome. | Q52964968 | ||
| Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC. | Q53341848 | ||
| DNA replication: Strand separation unravelled. | Q53402961 | ||
| Unwinding of the Escherichia coli origin of replication (oriC) can occur in the absence of initiation proteins but is stabilized by DnaA and histone-like proteins IHF or HU. | Q53959306 | ||
| Opposed actions of regulatory proteins, DnaA and IciA, in opening the replication origin of Escherichia coli | Q54057494 | ||
| Stabilization of Z DNA in vivo by localized supercoiling. | Q54342678 | ||
| Escherichia coli Dps interacts with DnaA protein to impede initiation: a model of adaptive mutation. | Q54426328 | ||
| Escherichia coli DnaA interacts with HU in initiation at the E. coli replication origin. | Q54428283 | ||
| Cooperative action of Escherichia coli ClpB protein and DnaK chaperone in the activation of a replication initiation protein. | Q54549149 | ||
| Initiation of lambda DNA replication. The Escherichia coli small heat shock proteins, DnaJ and GrpE, increase DnaK's affinity for the lambda P protein. | Q54660696 | ||
| Ordered assembly of nucleoprotein structures at the bacteriophage lambda replication origin during the initiation of DNA replication. | Q54728599 | ||
| Reconstitution of a nine-protein system that initiates bacteriophage lambda DNA replication. | Q54733874 | ||
| The integration host factor of Escherichia coli binds to bent DNA at the origin of replication of the plasmid pSC101. | Q54764277 | ||
| Complete enzymatic replication of plasmids containing the origin of the Escherichia coli chromosome. | Q54781484 | ||
| On the control of the replication of temperate bacteriophages superinfecting immune hosts | Q56698267 | ||
| Prereplication-complex formation: a molecular double take? | Q57756157 | ||
| Antisense RNA | Q67698980 | ||
| Transcriptional activation of ColE1 DNA synthesis by displacement of the nontranscribed strand | Q69012394 | ||
| Initiation protein induced helix destabilization at the lambda origin: a prepriming step in DNA replication | Q69820081 | ||
| Structure of branch points in replicating DNA: Presence of single-stranded connections in λ DNA branch points | Q69931264 | ||
| Replication of bacteriophage DNA. I. Replication of DNA of lambda phage defective in early functions | Q69952306 | ||
| Regulation of lambda dv plasmid DNA replication. A quantitative model for control of plasmid lambda dv replication in the bacterial cell division cycle | Q70024096 | ||
| Conformational changes in a replication origin induced by an initiator protein | Q70117842 | ||
| Locations of frequently opening regions on natural DNAs and their relation to functional loci | Q70754528 | ||
| Open-complex formation by the host initiator, DnaA, at the origin of P1 plasmid replication | Q34069162 | ||
| Homologous genetic recombination as an intrinsic dynamic property of a DNA structure induced by RecA/Rad51-family proteins: a possible advantage of DNA over RNA as genomic material | Q34084271 | ||
| Origin remodeling and opening in bacteria rely on distinct assembly states of the DnaA initiator | Q34107456 | ||
| Detection of localized DNA flexibility | Q34338118 | ||
| Replication control of plasmid P1 and its host chromosome: the common ground. | Q34428016 | ||
| Origin inactivation in bacterial DNA replication control | Q34545204 | ||
| Two forms of ribosomal protein L2 of Escherichia coli that inhibit DnaA in DNA replication | Q35017880 | ||
| Cdc45 (cell division cycle protein 45) guards the gate of the Eukaryote Replisome helicase stabilizing leading strand engagement. | Q35031537 | ||
| Common domains in the initiators of DNA replication in Bacteria, Archaea and Eukarya: combined structural, functional and phylogenetic perspectives. | Q35066207 | ||
| Replication initiator protein RepE of mini-F plasmid: functional differentiation between monomers (initiator) and dimers (autogenous repressor). | Q35200597 | ||
| Inhibition of ColE1 RNA primer formation by a plasmid-specified small RNA | Q35320065 | ||
| Two oppositely oriented arrays of low-affinity recognition sites in oriC guide progressive binding of DnaA during Escherichia coli pre-RC assembly. | Q35333019 | ||
| Counterintuitive DNA Sequence Dependence in Supercoiling-Induced DNA Melting | Q35826186 | ||
| A molecular chaperone, ClpA, functions like DnaK and DnaJ. | Q35968116 | ||
| Cryptic single-stranded-DNA binding activities of the phage lambda P and Escherichia coli DnaC replication initiation proteins facilitate the transfer of E. coli DnaB helicase onto DNA | Q35989806 | ||
| Critical sequences in the core of the P1 plasmid replication origin | Q36147487 | ||
| A single DnaA box is sufficient for initiation from the P1 plasmid origin | Q36255044 | ||
| Nucleotide-Induced Conformational Changes in Escherichia coli DnaA Protein Are Required for Bacterial ORC to Pre-RC Conversion at the Chromosomal Origin | Q36324820 | ||
| Replisome architecture and dynamics in Escherichia coli | Q36371840 | ||
| Protein- and ATP-dependent transitions from 'closed' to 'open' complexes at the ori of plasmid R6K | Q36373153 | ||
| Specific mutations within the AT-rich region of a plasmid replication origin affect either origin opening or helicase loading | Q36837514 | ||
| Two discriminatory binding sites in the Escherichia coli replication origin are required for DNA strand opening by initiator DnaA-ATP. | Q36852282 | ||
| Interactions of bacteriophage and host macromolecules in the growth of bacteriophage lambda | Q37066576 | ||
| Nucleoid-associated proteins and bacterial physiology. | Q37402014 | ||
| Specialized nucleoprotein structures at the origin of replication of bacteriophage lambda: localized unwinding of duplex DNA by a six-protein reaction | Q37402687 | ||
| Bacterial origin recognition complexes direct assembly of higher-order DnaA oligomeric structures | Q37413476 | ||
| DnaA structure, function, and dynamics in the initiation at the chromosomal origin | Q37520018 | ||
| Monomerization of RepA dimers by heat shock proteins activates binding to DNA replication origin | Q37590548 | ||
| Building the bacterial orisome: high-affinity DnaA recognition plays a role in setting the conformation of oriC DNA | Q37712455 | ||
| Regulating DNA replication in bacteria | Q38087526 | ||
| Interaction of the initiator protein DnaA of Escherichia coli with its DNA target | Q38293364 | ||
| Monomer/dimer ratios of replication protein modulate the DNA strand-opening in a replication origin | Q38303508 | ||
| Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF. | Q38324468 | ||
| Requirements for and regulation of origin opening of plasmid P1. | Q38333505 | ||
| The DnaK-DnaJ-GrpE chaperone system activates inert wild type pi initiator protein of R6K into a form active in replication initiation | Q38335420 | ||
| The iteron bases and spacers of the P1 replication origin contain information that specifies the formation of a complex structure involved in initiation | Q38348849 | ||
| Direct evidence for DNA bending at the lambda replication origin | Q38349375 | ||
| Reconstitution of R6K DNA replication in vitro using 22 purified proteins | Q38350500 | ||
| The plasmid RK2 initiation protein binds to the origin of replication as a monomer | Q38360196 | ||
| A model for initiation at origins of DNA replication | Q39256067 | ||
| Dissection and Comparative Anatomy of the Origins of Replication of Lambdoid Phages | Q39892860 | ||
| The pSC101 par locus alters protein-DNA interactions in vivo at the plasmid replication origin | Q39937040 | ||
| Replication control system in lambda dv. | Q40218271 | ||
| Effects of the pSC101 partition (par) locus on in vivo DNA supercoiling near the plasmid replication origin | Q40393160 | ||
| The structure of the initiation complex at the replication origin, oriC, of Escherichia coli | Q40412850 | ||
| Purified bacteriophage λ O protein binds to four repeating sequences at the λ replication origin | Q40496150 | ||
| Initiation of the DNA replication of bacteriophage lambda in Escherichia coli K12 | Q40790970 | ||
| Initiation of lambda DNA replication with purified host- and bacteriophage-encoded proteins: the role of the dnaK, dnaJ and grpE heat shock proteins | Q40817967 | ||
| Localized DNA melting and structural pertubations in the origin of replication, oriC, of Escherichia coli in vitro and in vivo | Q41081137 | ||
| Gyrase-dependent stabilization of pSC101 plasmid inheritance by transcriptionally active promoters | Q41082146 | ||
| DNA sequences and structural homologies of the replication origins of lambdoid bacteriophages | Q41461161 | ||
| Highly organized DnaA-oriC complexes recruit the single-stranded DNA for replication initiation | Q41577510 | ||
| DNA bending and twisting properties of integration host factor determined by DNA cyclization | Q41710588 | ||
| The bacterial DnaA-trio replication origin element specifies single-stranded DNA initiator binding | Q41791837 | ||
| Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling | Q41791841 | ||
| Bacterial initiators form dynamic filaments on single-stranded DNA monomer by monomer | Q41824949 | ||
| SeqA blocking of DnaA-oriC interactions ensures staged assembly of the E. coli pre-RC. | Q41836652 | ||
| Topological characterization of the DnaA-oriC complex using single-molecule nanomanipuation. | Q41960283 | ||
| Soj/ParA stalls DNA replication by inhibiting helix formation of the initiator protein DnaA. | Q42027915 | ||
| Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coli | Q42085318 | ||
| Coupling of transcription and replication machineries in λ DNA replication initiation: evidence for direct interaction of Escherichia coli RNA polymerase and the λO protein | Q42157435 | ||
| The right half of the Escherichia coli replication origin is not essential for viability, but facilitates multi-forked replication | Q42391802 | ||
| DiaA dynamics are coupled with changes in initial origin complexes leading to helicase loading. | Q42576825 | ||
| Large-scale stable opening of supercoiled DNA in response to temperature and supercoiling in (A + T)-rich regions that promote low-salt cruciform extrusion | Q42618431 | ||
| Role of TrfA and DnaA proteins in origin opening during initiation of DNA replication of the broad host range plasmid RK2. | Q42661197 | ||
| Initiation of DNA Replication | Q43012651 | ||
| The localized melting of mini-F origin by the combined action of the mini-F initiator protein (RepE) and HU and DnaA of Escherichia coli | Q44029616 | ||
| Specialized nucleoprotein structures at the origin of replication of bacteriophage lambda. Protein association and disassociation reactions responsible for localized initiation of replication | Q44201415 | ||
| Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosome | Q44347022 | ||
| DnaA Protein of Escherichia coli: oligomerization at the E. coli chromosomal origin is required for initiation and involves specific N-terminal amino acids | Q44514207 | ||
| Conformation of the origin of P1 plasmid replication. Initiator protein induced wrapping and intrinsic unstacking | Q44539179 | ||
| Heat shock protein-mediated disassembly of nucleoprotein structures is required for the initiation of bacteriophage lambda DNA replication | Q44642522 | ||
| Reconstitution of F factor DNA replication in vitro with purified proteins | Q44770016 | ||
| Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA. | Q44775863 | ||
| Transcriptional activation of initiation of replication from the E. coli chromosomal origin: an RNA-DNA hybrid near oriC. | Q44784018 | ||
| Transcription stimulates the establishment of bidirectional lambda DNA replication in vitro | Q45228151 | ||
| Host virus interactions in the initiation of bacteriophage lambda DNA replication. Recruitment of Escherichia coli DnaB helicase by lambda P replication protein | Q45851169 | ||
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 62 | |
| P577 | publication date | 2016-09-30 | |
| P1433 | published in | Frontiers in molecular biosciences | Q27726420 |
| P1476 | title | Opening the Strands of Replication Origins-Still an Open Question | |
| P478 | volume | 3 |
| Q55313457 | Chromosome 1 licenses chromosome 2 replication in Vibrio cholerae by doubling the crtS gene dosage. |
| Q34547145 | Control of bacterial chromosome replication by non-coding regions outside the origin. |
| Q36215923 | Inactivation of Individual SeqA Binding Sites of the E. coli Origin Reveals Robustness of Replication Initiation Synchrony |
| Q33576044 | The DnaK Chaperone Uses Different Mechanisms To Promote and Inhibit Replication of Vibrio cholerae Chromosome 2. |
| Q39217854 | Xer Site Specific Recombination: Double and Single Recombinase Systems |
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