Nucleoid-associated proteins and bacterial physiology.

scientific article published on January 2009

Nucleoid-associated proteins and bacterial physiology. is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1016/S0065-2164(08)01002-2
P698PubMed publication ID19245936

P50authorCharles J. DormanQ42123977
P2093author name stringCharles J Dorman
P2860cites workHfq is necessary for regulation by the untranslated RNA DsrAQ24548921
Structure of the Escherichia coli leucine-responsive regulatory protein Lrp reveals a novel octameric assemblyQ24684156
Fis Targets Assembly of the Xis Nucleoprotein Filament to Promote Excisive Recombination by Phage LambdaQ27643723
The crystal structure of Dps, a ferritin homolog that binds and protects DNAQ27749085
DNA supercoiling and transcription in Escherichia coli: The FIS connectionQ28207592
Signal transduction and regulatory mechanisms involved in control of the sigma(S) (RpoS) subunit of RNA polymeraseQ28220384
DNA supercoiling and environmental regulation of virulence gene expression in Shigella flexneriQ28245605
A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coliQ28280711
H-NS mediates the silencing of laterally acquired genes in bacteriaQ28490022
Activation of gene expression by a novel DNA structural transmission mechanism that requires supercoiling-induced DNA duplex destabilization in an upstream activating sequenceQ28533041
A DNA structural atlas for Escherichia coliQ30002426
Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulationQ33263766
Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coliQ33554485
The ability of Salmonella to enter mammalian cells is affected by bacterial growth stateQ33616743
Interplay of global regulators and cell physiology in the general stress response of Escherichia coliQ33632476
Molecular anatomy of a transcription activation patch: FIS-RNA polymerase interactions at the Escherichia coli rrnB P1 promoterQ33885955
Adaptation to famine: a family of stationary-phase genes revealed by microarray analysisQ34159691
Growth phase-dependent regulation and stringent control of fis are conserved processes in enteric bacteria and involve a single promoter (fis P) in Escherichia coliQ34555728
The seven E. coli ribosomal RNA operon upstream regulatory regions differ in structure and transcription factor binding efficienciesQ34559131
Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selectionQ34570839
The leucine-responsive regulatory protein, Lrp, activates transcription of the fim operon in Salmonella enterica serovar typhimurium via the fimZ regulatory gene.Q34709533
Modes of regulation of RpoS by H-NSQ35075713
Regulation of gene expression by histone-like proteins in bacteria.Q35097677
Communication between Hin recombinase and Fis regulatory subunits during coordinate activation of Hin-catalyzed site-specific DNA inversionQ35208906
Sequence, regulation, and functions of fis in Salmonella typhimuriumQ35582859
The Fis protein: it's not just for DNA inversion anymoreQ35658496
H-NS: a universal regulator for a dynamic genomeQ35752413
Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein FisQ36007346
Involvement of Escherichia coli FIS protein in maintenance of bacteriophage mu lysogeny by the repressor: control of early transcription and inhibition of transpositionQ36102146
Dramatic changes in Fis levels upon nutrient upshift in Escherichia coliQ36137894
Transpososome dynamics and regulation in Tn10 transpositionQ36648422
Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tractsQ36700176
Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteriaQ37256199
Two Heat-Resistant, Low Molecular Weight Proteins from Escherichia coli That Stimulate DNA-Directed RNA SynthesisQ37502833
Effects of FIS overexpression on cell growth, rRNA synthesis, and ribosome content in Escherichia coliQ38301719
Genome organisation and chromatin structure in Escherichia coliQ38302764
A role for the Escherichia coli H-NS-like protein StpA in OmpF porin expression through modulation of micF RNA stabilityQ38307599
Escherichia coli histone-like protein H-NS preferentially binds to horizontally acquired DNA in association with RNA polymeraseQ38308470
Association of nucleoid proteins with coding and non-coding segments of the Escherichia coli genome.Q38309827
Selective silencing of foreign DNA with low GC content by the H-NS protein in SalmonellaQ38312504
The integration host factor (IHF) integrates stationary-phase and virulence gene expression in Salmonella enterica serovar Typhimurium.Q38314825
A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium.Q38338833
The DNA binding protein H-NS binds to and alters the stability of RNA in vitro and in vivoQ38341060
Variable structures of Fis-DNA complexes determined by flanking DNA-protein contactsQ38350596
The gyr genes of Salmonella enterica serovar Typhimurium are repressed by the factor for inversion stimulation, Fis.Q38351905
Global gene expression profiling in Escherichia coli K12. The effects of leucine-responsive regulatory proteinQ38364098
An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.Q39516058
The Escherichia coli Fis Protein Stimulates Bacteriophage λ Integrative Recombination In VitroQ39749055
Fis activates the RpoS-dependent stationary-phase expression of proP in Escherichia coliQ39838288
The Escherichia coli stpA gene is transiently expressed during growth in rich medium and is induced in minimal medium and by stress conditions.Q39844343
Involvement of Fis protein in replication of the Escherichia coli chromosomeQ39933054
Fis plays a role in Tn5 and IS50 transpositionQ39935278
Dynamic state of DNA topology is essential for genome condensation in bacteria.Q40450335
The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coliQ40505779
Global gene expression profiling in Escherichia coli K12. The effects of integration host factorQ41743959
Fis regulates transcriptional induction of RpoS in Salmonella entericaQ42068290
Differential regulation of Escherichia coli topoisomerase I by Fis.Q42609303
Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanismQ42630533
Structural basis for H-NS-mediated trapping of RNA polymerase in the open initiation complex at the rrnB P1.Q42664136
Interrelated effects of DNA supercoiling, ppGpp, and low salt on melting within the Escherichia coli ribosomal RNA rrnB P1 promoterQ43446001
FIS-dependent trans-activation of tRNA and rRNA operons of Escherichia coliQ43828414
Escherichia coli prereplication complex assembly is regulated by dynamic interplay among Fis, IHF and DnaA.Q44775863
Selective repression by Fis and H-NS at the Escherichia coli dps promoter.Q46386594
The dps promoter is activated by OxyR during growth and by IHF and σs in stationary phaseQ47673138
A thermostable protein factor acting on in vitro DNA transcriptionQ47736505
Interplay between global regulators of Escherichia coli: effect of RpoS, Lrp and H-NS on transcription of the gene osmC.Q47848431
Expression of the Fis protein is sustained in late-exponential- and stationary-phase cultures of Salmonella enterica serovar Typhimurium grown in the absence of aerationQ50068958
An H-NS-like stealth protein aids horizontal DNA transmission in bacteriaQ50074297
H-NS, the genome sentinelQ50074672
Probing bacterial nucleoid structure with optical tweezers.Q51066522
Three-dimensional structure of the E. coli DNA-binding protein FIS.Q53030527
Fis stabilizes the interaction between RNA polymerase and the ribosomal promoter rrnB P1, leading to transcriptional activation.Q53855219
Conformational changes of the upstream DNA mediated by H-NS and FIS regulate E. coli RrnB P1 promoter activity.Q53937403
The Escherichia coli histone-like protein HU regulates rpoS translation.Q54016367
The role of LRP and H-NS in transcription regulation: involvement of synergism, allostery and macromolecular crowding.Q54449266
YdgT, the Hha paralogue in Escherichia coli, forms heteromeric complexes with H-NS and StpA.Q54498518
Mechanism of transcriptional activation by FIS: role of core promoter structure and DNA topology.Q54521059
The C-terminal domains of the RNA polymerase alpha subunits: contact site with Fis and localization during co-activation with CRP at the Escherichia coli proP P2 promoter.Q54549828
Control of Escherichia coli type 1 fimbrial gene expression in stationary phase: a negative role for RpoS.Q54569037
DNA supercoiling depends on the phosphorylation potential in Escherichia coli.Q54591133
Antagonistic involvement of FIS and H-NS proteins in the transcriptional control of hns expression.Q54592494
Inhibition of bacteriophage Mu transposition by Mu repressor and Fis.Q54650806
Analysis of the Fis-dependent and Fis-independent transcription activation mechanisms of the Escherichia coli ribosomal RNA P1 promoterQ54682148
The osmZ (bglY) gene encodes the DNA-binding protein H-NS (H1a), a component of the Escherichia coli K12 nucleoid.Q54707912
Cellular factors couple recombination with growth phase: characterization of a new component in the lambda site-specific recombination pathway.Q54761410
Host protein requirements for in vitro site-specific DNA inversion.Q54776760
Role of the nucleoid-associated protein Fis in the regulation of virulence properties of enteropathogenic Escherichia coliQ58827834
Involvement of FIS in the H-NS-mediated regulation of virF gene of Shigella and enteroinvasive Escherichia coliQ61775013
The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNAQ73072736
Twelve species of the nucleoid-associated protein from Escherichia coli. Sequence recognition specificity and DNA binding affinityQ73157405
DNA supercoiling contributes to disconnect sigmaS accumulation from sigmaS-dependent transcription in Escherichia coliQ73215732
A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coliQ73265521
Variation in HU composition during growth of Escherichia coli: the heterodimer is required for long term survivalQ73876610
FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coliQ73947854
Differential binding of the Escherichia coli HU, homodimeric forms and heterodimeric form to linear, gapped and cruciform DNAQ74637667
The small nucleoid protein Fis is involved in Vibrio cholerae quorum sensingQ79444468
P921main subjectphysiologyQ521
P304page(s)47-64
P577publication date2009-01-01
P1433published inAdvances in Applied MicrobiologyQ15753069
P1476titleNucleoid-associated proteins and bacterial physiology
P478volume67

Reverse relations

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