Structural and molecular genetic analyses of the bacterial carbazole degradation system.

scientific article published on 07 January 2012

Structural and molecular genetic analyses of the bacterial carbazole degradation system. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1271/BBB.110620
P698PubMed publication ID22232235

P50authorHideaki NojiriQ38318971
P2093author name stringHideaki Nojiri
P2860cites workPurification and characterization of carbazole 1,9a-dioxygenase, a three-component dioxygenase system of Pseudomonas resinovorans strain CA10Q24537314
High-resolution mapping of plasmid transcriptomes in different host bacteriaQ24653329
Flexible DNA bending in HU-DNA cocrystal structuresQ27641656
Electron transfer complex formation between oxygenase and ferredoxin components in Rieske nonheme iron oxygenase systemQ27643276
Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme systemQ27653459
Dicamba monooxygenase: structural insights into a dynamic Rieske oxygenase that catalyzes an exocyclic monooxygenationQ27656542
Crystal Structure of Dicamba Monooxygenase: A Rieske Nonheme Oxygenase that Catalyzes Oxidative DemethylationQ27656546
Specific Interactions between the ferredoxin and terminal oxygenase components of a class IIB Rieske nonheme iron oxygenase, carbazole 1,9a-dioxygenaseQ27656563
Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenaseQ27759020
Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADPQ28349622
Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolaseQ28379059
Characterization of MexE-MexF-OprN, a positively regulated multidrug efflux system of Pseudomonas aeruginosaQ28492521
Divergent structures of carbazole degradative car operons isolated from gram-negative bacteriaQ31100750
A three-component dicamba O-demethylase from Pseudomonas maltophilia, strain DI-6: gene isolation, characterization, and heterologous expressionQ31163916
Crystallization and preliminary X-ray diffraction studies of a ferredoxin reductase component of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.Q33902160
Bacterial metabolism of fluorene, dibenzofuran, dibenzothiophene, and carbazoleQ33953328
Natural conjugative plasmids induce bacterial biofilm developmentQ33953756
BenR, a XylS homologue, regulates three different pathways of aromatic acid degradation in Pseudomonas putidaQ33994918
Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmidsQ34119158
Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host functionQ34119223
Crystallization and preliminary X-ray diffraction studies of a terminal oxygenase of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.Q34404558
Rieske business: structure-function of Rieske non-heme oxygenases.Q34451761
Pyoverdine siderophores: from biogenesis to biosignificanceQ34583382
Geometric and electronic structure/function correlations in non-heme iron enzymesQ34647398
Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation.Q34649437
Non-heme iron oxygenasesQ34662093
Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinaseQ34696950
Molecular bases of aerobic bacterial degradation of dioxins: involvement of angular dioxygenation.Q35008443
Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphereQ35091869
The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmidsQ46095586
Genome-wide analysis of the H-NS and Sfh regulatory networks in Salmonella Typhimurium identifies a plasmid-encoded transcription silencing mechanismQ46192581
Alteration of the substrate specificity of the angular dioxygenase carbazole 1,9a-dioxygenaseQ46211701
Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacteriumQ46409644
A three-component dicamba O-demethylase from Pseudomonas maltophilia, strain DI-6: purification and characterizationQ46429461
Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteriaQ46459432
2-Oxoquinoline 8-monooxygenase oxygenase component: active site modulation by Rieske-[2Fe-2S] center oxidation/reductionQ46490198
Structure of the terminal oxygenase component of angular dioxygenase, carbazole 1,9a-dioxygenaseQ46591638
Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains.Q46836384
Differentiation of carbazole catabolic operons by replacement of the regulated promoter via transposition of an insertion sequenceQ46925583
Oxygen activating nonheme iron enzymes.Q47829447
Characterization of the cryptic plasmids of the Pseudomonas alcaligenes type strainQ48055632
Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements.Q48080352
An H-NS-like stealth protein aids horizontal DNA transmission in bacteriaQ50074297
Cloning and nucleotide sequence of carbazole catabolic genes from Pseudomonas stutzeri strain OM1, isolated from activated sludgeQ50103247
Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samplesQ50676996
Motility influences biofilm architecture in Escherichia coliQ51292665
The ferroprotein component of a methylene hydroxylase.Q53769632
Escherichia coli DnaA interacts with HU in initiation at the E. coli replication origin.Q54428283
Genetic and functional analysis of the basic replicon of pPS10, a plasmid specific for Pseudomonas isolated from Pseudomonas syringae patovar savastanoi.Q54684492
Isolation and characterization of altered plasmids in mutant strains of Pseudomonas putida NCIB 9816.Q54723611
IHF and HU: flexible architects of bent DNA.Q35753197
Biphenyl dioxygenases: functional versatilities and directed evolutionQ35855080
Structure-based analysis of HU-DNA bindingQ35933834
Similar enzymes, different structures: phthalate dioxygenase is an alpha3alpha3 stacked hexamer, not an alpha3beta3 trimer like "normal" Rieske oxygenasesQ36157102
The architectural role of nucleoid-associated proteins in the organization of bacterial chromatin: a molecular perspective.Q36552500
The R1 conjugative plasmid increases Escherichia coli biofilm formation through an envelope stress response.Q36672604
Crystallization and preliminary X-ray diffraction studies of a novel ferredoxin involved in the dioxygenation of carbazole by Novosphingobium sp. KA1Q36744969
H-NS family members function coordinately in an opportunistic pathogenQ36999879
Structure of Haloacetate-Catabolic IncP-1β Plasmid pUO1 and Genetic Mobility of Its Residing Haloacetate-Catabolic TransposonQ37052103
DNA bridging and antibridging: a role for bacterial nucleoid-associated proteins in regulating the expression of laterally acquired genesQ37389789
Nucleoid-associated proteins and bacterial physiology.Q37402014
The diversity of conjugative relaxases and its application in plasmid classificationQ37461189
Bacterial nucleoid-associated proteins, nucleoid structure and gene expressionQ37688895
HU protein of Escherichia coli binds specifically to DNA that contains single-strand breaks or gapsQ38296278
Deletion and transposon mutagenesis and sequence analysis of the pRO1600 OriR region found in the broad-host-range plasmids of the pQF seriesQ38308585
Selective silencing of foreign DNA with low GC content by the H-NS protein in SalmonellaQ38312504
Differential binding profiles of StpA in wild-type and h-ns mutant cells: a comparative analysis of cooperative partners by chromatin immunoprecipitation-microarray analysis.Q38357348
Purification and Properties of Pyrazon Dioxygenase from Pyrazon-Degrading BacteriaQ39144350
Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10.Q39503764
Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10.Q39846665
Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of Pseudomonas resinovorans strain CA10.Q40175807
Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathwayQ41370489
The 2-His-1-carboxylate facial triad--an emerging structural motif in mononuclear non-heme iron(II) enzymesQ41699906
The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazoleQ41819755
Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilateQ42122213
Characterization of novel carbazole catabolism genes from gram-positive carbazole degrader Nocardioides aromaticivorans IC177.Q42122224
Microbial responses to xenobiotic compounds. Identification of genes that allow Pseudomonas putida KT2440 to cope with 2,4,6-trinitrotolueneQ42133180
Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathwaysQ42628960
Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4.Q42632647
Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putidaQ42692935
Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676.Q42693452
Isolation and characterization of the gene encoding the chloroplast-type ferredoxin component of carbazole 1,9a-dioxygenase from a putative Kordiimonas sp.Q42961345
Behavior of various hosts of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial microcosmsQ43169939
Identification of genes regulated by the MvaT-like paralogues TurA and TurB of Pseudomonas putida KT2440.Q43269651
Mutagenic profiles of carbazole in the male germ cells of Swiss albino miceQ43915789
Expression, purification, and characterization of 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase from carbazole-degrader Pseudomonas resinovorans strain CA10.Q44428006
Characterization and identification of genes essential for dimethyl sulfide utilization in Pseudomonas putida strain DS1.Q44498012
Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6.Q44972467
Crystal structure of the ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10, a novel Rieske non-heme iron oxygenase systemQ45220732
P433issue1
P304page(s)1-18
P577publication date2012-01-07
P1433published inBioscience, Biotechnology, and BiochemistryQ11192374
P1476titleStructural and molecular genetic analyses of the bacterial carbazole degradation system
P478volume76

Reverse relations

cites work (P2860)
Q39423679Carbazole angular dioxygenation and mineralization by bacteria isolated from hydrocarbon-contaminated tropical African soil.
Q51548063Comparisons of the transferability of plasmids pCAR1, pB10, R388, and NAH7 among Pseudomonas putida at different cell densities.
Q91808035Complete Genome Sequence of Thalassococcus sp. Strain S3, a Marine Roseobacter Clade Member Capable of Degrading Carbazole
Q37074336Complete Genome Sequence of the Carbazole Degrader Pseudomonas resinovorans Strain CA10 (NBRC 106553).
Q90384628Complete Genome Sequence of the Marine Carbazole-Degrading Bacterium Erythrobacter sp. Strain KY5
Q34299559Crystallization and preliminary X-ray diffraction analyses of the redox-controlled complex of terminal oxygenase and ferredoxin components in the Rieske nonhaem iron oxygenase carbazole 1,9a-dioxygenase.
Q37281266Crystallization and preliminary X-ray diffraction studies of the reduced form of the terminal oxygenase component of the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.
Q46469830Degradation of carbazole, dibenzothiophene and polyaromatic hydrocarbons by recombinant Rhodococcus sp.
Q35888423Effects of carbazole-degradative plasmid pCAR1 on biofilm morphology in Pseudomonas putida KT2440.
Q35221153Effects of three different nucleoid-associated proteins encoded on IncP-7 plasmid pCAR1 on host Pseudomonas putida KT2440.
Q91866642Endogenous and Foreign Nucleoid-Associated Proteins of Bacteria: Occurrence, Interactions and Effects on Mobile Genetic Elements and Host's Biology
Q41558018Growth phase-dependent expression profiles of three vital H-NS family proteins encoded on the chromosome of Pseudomonas putida KT2440 and on the pCAR1 plasmid
Q58198780High-level expression, purification and characterization of carbazole dioxygenase, a three components dioxygenase, of Pseudomonas GBS.5
Q42663815Modulation of primary cell function of host Pseudomonas bacteria by the conjugative plasmid pCAR1.
Q36497535MvaT Family Proteins Encoded on IncP-7 Plasmid pCAR1 and the Host Chromosome Regulate the Host Transcriptome Cooperatively but Differently
Q35227911Oligomerization mechanisms of an H-NS family protein, Pmr, encoded on the plasmid pCAR1 provide a molecular basis for functions of H-NS family members
Q53729130Properties, environmental fate and biodegradation of carbazole.
Q37545293Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community.
Q27681938Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Nonheme Iron Oxygenase Carbazole 1,9a-Dioxygenase
Q27681331Structural insight into the substrate- and dioxygen-binding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9a-dioxygenase
Q39080041The behavior of mobile genetic elements (MGEs) in different environments

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