| scholarly article | Q13442814 |
| P50 | author | Hirokazu Yano | Q42760500 |
| P2093 | author name string | Masahira Hattori | |
| Yuji Nagata | |||
| Masatoshi Miyakoshi | |||
| Masataka Tsuda | |||
| Michiro Tabata | |||
| Kenshiro Ohshima | |||
| P2860 | cites work | Evolutionary genomics of ecological specialization | Q24564036 |
| Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans | Q24597491 | ||
| Improved microbial gene identification with GLIMMER | Q27860463 | ||
| The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers | Q28131744 | ||
| A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants | Q29547327 | ||
| JPred: a consensus secondary structure prediction server | Q29614378 | ||
| Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum | Q29615259 | ||
| SOSUI: classification and secondary structure prediction system for membrane proteins | Q29616676 | ||
| The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere | Q30697194 | ||
| Cloning and nucleotide sequence analysis of xylE gene responsible for meta-cleavage of 4-chlorocatechol from Pseudomonas sp. S-47. | Q31440208 | ||
| Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST | Q33265940 | ||
| Identification and characterization of Tn4656, a novel class II transposon carrying a set of toluene-degrading genes from TOL plasmid pWW53. | Q33553903 | ||
| Plasposons: modular self-cloning minitransposon derivatives for rapid genetic analysis of gram-negative bacterial genomes. | Q33715459 | ||
| Molecular diversity of plasmids bearing genes that encode toluene and xylene metabolism in Pseudomonas strains isolated from different contaminated sites in Belarus | Q33987152 | ||
| The clc element of Pseudomonas sp. strain B13 and other mobile degradative elements employing phage-like integrases | Q34206720 | ||
| Duplication of both xyl catabolic operons on TOL plasmid pWW15 | Q54688148 | ||
| Purification and characterization of SopA and SopB proteins essential for F plasmid partitioning. | Q54724975 | ||
| Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0. | Q54758580 | ||
| Identification and characterization of Tn4653, a transposon covering the toluene transposon Tn4651 on TOL plasmid pWW0 | Q69848365 | ||
| Physical and functional mapping of two cointegrate plasmids derived from RP4 and TOL plasmid pDK1 | Q70267259 | ||
| Host range of conjugation and replication functions of the Escherichia coli sex plasmid Flac. Comparison with the broad host-range plasmid RK2 | Q71645704 | ||
| Transposon-mediated site-specific recombination: A defined in vitro system | Q72908362 | ||
| The shuffling function of resolvases | Q73935075 | ||
| Transposition of DEH, a broad-host-range transposon flanked by ISPpu12, in Pseudomonas putida is associated with genomic rearrangements and dehalogenase gene silencing. | Q34320282 | ||
| Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation. | Q34649437 | ||
| Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation. | Q35130009 | ||
| Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity. | Q35613132 | ||
| Isolation and characterization of Pseudomonas putida PpF1 mutants defective in the toluene dioxygenase enzyme system. | Q36304491 | ||
| Isolation and characterization of spontaneously occurring TOL plasmid mutants of Pseudomonas putida HS1 | Q36316692 | ||
| Ubiquity of plasmids in coding for toluene and xylene metabolism in soil bacteria: evidence for the existence of new TOL plasmids | Q36615036 | ||
| Revised nomenclature for transposable genetic elements | Q37263470 | ||
| The diversity of conjugative relaxases and its application in plasmid classification | Q37461189 | ||
| An unusual Tn21-like transposon containing an ars operon is present in highly arsenic-resistant strains of the biomining bacterium Acidithiobacillus caldus. | Q39536998 | ||
| Functional and mutational analysis of conjugative transfer region 1 (Tra1) from the IncHI1 plasmid R27. | Q39678795 | ||
| Complete nucleotide sequence of plasmid Rts1: implications for evolution of large plasmid genomes | Q39679378 | ||
| Nucleotide sequence of xylE from the TOL pDK1 plasmid and structural comparison with isofunctional catechol-2,3-dioxygenase genes from TOL, pWW0 and NAH7 | Q39941384 | ||
| Naturally occurring TOL plasmids in Pseudomonas strains carry either two homologous or two nonhomologous catechol 2,3-oxygenase genes. | Q39961609 | ||
| Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWW0 and pWW53. | Q39964378 | ||
| TOL plasmid pWW15 contains two nonhomologous, independently regulated catechol 2,3-oxygenase genes | Q39980772 | ||
| Regulation of the degradative pathway enzymes coded for by the TOL plasmid (pWWO) from Pseudomonas putida mt-2 | Q39990573 | ||
| Transposable elements in prokaryotes | Q40128634 | ||
| Identical resolvases are encoded by Pseudomonas TOL plasmids pWW53 and pDK1. | Q40534944 | ||
| Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements | Q41340424 | ||
| Definition of three resolvase binding sites at the res loci of Tn21 and Tn1721. | Q41411097 | ||
| A Tn7-based broad-range bacterial cloning and expression system | Q41458282 | ||
| Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators | Q41620651 | ||
| GenomeMatcher: a graphical user interface for DNA sequence comparison | Q42199727 | ||
| The 4-hydroxy-2-oxovalerate aldolase and acetaldehyde dehydrogenase (acylating) encoded by the nahM and nahO genes of the naphthalene catabolic plasmid pWW60-22 provide further evidence of conservation of meta-cleavage pathway gene sequences | Q42274774 | ||
| The IncP-6 plasmid Rms149 consists of a small mobilizable backbone with multiple large insertions | Q42603710 | ||
| Naphthalene degrading genes on plasmid NAH7 are on a defective transposon | Q42632561 | ||
| The transposable elements resident on the plasmids of Pseudomonas putida strain H, Tn5501 and Tn5502, are cryptic transposons of the Tn3 family | Q42686465 | ||
| Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676. | Q42693452 | ||
| Molecular characterization of a deletion/duplication rearrangement in tfd genes from Ralstonia eutropha JMP134(pJP4) that improves growth on 3-chlorobenzoic acid but abolishes growth on 2,4-dichlorophenoxyacetic acid | Q43701739 | ||
| R factor-mediated resistance to aminoglycoside antibiotics in Pseudomonas aeruginosa | Q44263146 | ||
| Genome plasticity in Acinetobacter: new degradative capabilities acquired by the spontaneous amplification of large chromosomal segments. | Q44326467 | ||
| Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6. | Q44972467 | ||
| An improved suicide vector for construction of chromosomal insertion mutations in bacteria | Q45029340 | ||
| Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains. | Q46836384 | ||
| Pleiotropic roles of iron-responsive transcriptional regulator Fur in Burkholderia multivorans | Q48074453 | ||
| Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements. | Q48080352 | ||
| A comparison of the multiple alleles of xylS carried by TOL plasmids pWW53 and pDK1 and its implications for their evolutionary relationship | Q48129991 | ||
| Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samples. | Q50676996 | ||
| Horizontal gene transfer and microbial adaptation to xenobiotics: new types of mobile genetic elements and lessons from ecological studies. | Q51194427 | ||
| Characterization and sequence of a novel insertion sequence, IS162, from pseudomonas fluorescens | Q52209461 | ||
| A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation. | Q53853281 | ||
| Molecular cloning of the xylL-xylE region from the P. putida TOL plasmid, pDK1 | Q54102556 | ||
| P433 | issue | 17 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 4337-4347 | |
| P577 | publication date | 2010-06-25 | |
| P1433 | published in | Journal of Bacteriology | Q478419 |
| P1476 | title | Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids | |
| P478 | volume | 192 |
| Q51548063 | Comparisons of the transferability of plasmids pCAR1, pB10, R388, and NAH7 among Pseudomonas putida at different cell densities. |
| Q41824039 | Complete sequence of pOZ176, a 500-kilobase IncP-2 plasmid encoding IMP-9-mediated carbapenem resistance, from outbreak isolate Pseudomonas aeruginosa 96. |
| Q36825381 | Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance |
| Q64100639 | Genetic Characterization of a -Carrying IncP-7β Plasmid p1160-VIM and a -Harboring Integrative and Conjugative Element Tn From Clinical |
| Q37512524 | Host Range of the Conjugative Transfer System of IncP-9 Naphthalene-Catabolic Plasmid NAH7 and Characterization of Its oriT Region and Relaxase |
| Q37332245 | Host range diversification within the IncP-1 plasmid group. |
| Q35540708 | Isolation of oxygenase genes for indigo-forming activity from an artificially polluted soil metagenome by functional screening using Pseudomonas putida strains as hosts. |
| Q40515882 | Lateral gene transfer, bacterial genome evolution, and the Anthropocene |
| Q34047042 | Mobility and generation of mosaic non-autonomous transposons by Tn3-derived inverted-repeat miniature elements (TIMEs). |
| Q35659811 | Replication and Active Partition of Integrative and Conjugative Elements (ICEs) of the SXT/R391 Family: The Line between ICEs and Conjugative Plasmids Is Getting Thinner. |
| Q37545293 | Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community. |
| Q37974625 | Structural and molecular genetic analyses of the bacterial carbazole degradation system. |
| Q39080041 | The behavior of mobile genetic elements (MGEs) in different environments |
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