Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community.

scientific article published on 18 October 2013

Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/AEM.02571-13
P932PMC publication ID3911017
P698PubMed publication ID24141122

P50authorMoriya OhkumaQ88843162
Masaki ShintaniQ38318953
Hideaki NojiriQ38318971
P2093author name stringKazuhide Kimbara
Atsushi Yamazoe
Akira Hosoyama
Kazuhiro Matsui
Jun-Ichi Inoue
Shoko Ohji
P2860cites workQIIME allows analysis of high-throughput community sequencing dataQ24616873
Genomic sequencing of single microbial cells from environmental samplesQ24631339
An improved method for rapid generation of unmarked Pseudomonas aeruginosa deletion mutantsQ24815663
Mechanisms of, and barriers to, horizontal gene transfer between bacteriaQ28270244
EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequencesQ29013815
Establishment of new genetic traits in a microbial biofilm community.Q32062585
Novel assay to assess permissiveness of a soil microbial community toward receipt of mobile genetic elementsQ33590512
Structure/function studies on enzymes in the diaminopimelate pathway of bacterial cell wall biosynthesisQ33744998
In vivo expression technology strategies: valuable tools for biotechnology.Q34056559
Decontamination of MDA reagents for single cell whole genome amplificationQ34058417
Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmidsQ34119158
IncP plasmids are most effective in mediating conjugation between Escherichia coli and streptomycetes.Q54462275
Subcellular distribution of actively partitioning F plasmid during the cell division cycle in E. coli.Q54558803
Transfer of the broad-host-range IncQ plasmid RSF1010 and other plasmid vectors to the gram-positive methylotroph Brevibacterium methylicum by electrotransformationQ72272658
Single cell genome sequencingQ34239412
Bacterial conjugative plasmids mobilize DNA transfer between bacteria and yeastQ34505179
Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation.Q34649437
Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinaseQ34696950
Cultivation-independent examination of horizontal transfer and host range of an IncP-1 plasmid among gram-positive and gram-negative bacteria indigenous to the barley rhizosphereQ35091869
probeBase: an online resource for rRNA-targeted oligonucleotide probesQ35158030
The mating pair formation system of conjugative plasmids-A versatile secretion machinery for transfer of proteins and DNA.Q36134091
Mobile genetic elements: the agents of open source evolutionQ36247081
Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cellQ36535569
Mobility of plasmids.Q37784107
The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms.Q37876072
Structural and molecular genetic analyses of the bacterial carbazole degradation system.Q37974625
The antibiotic resistance "mobilome": searching for the link between environment and clinic.Q38113563
probeCheck--a central resource for evaluating oligonucleotide probe coverage and specificityQ38289073
New unstable variants of green fluorescent protein for studies of transient gene expression in bacteriaQ39561041
IncP plasmids are unusually effective in mediating conjugation of Escherichia coli and Saccharomyces cerevisiae: involvement of the tra2 mating systemQ39568984
Characterization and DNA sequence of the mobilization region of pLV22a from Bacteroides fragilisQ39837807
Transfer of plasmid RSF1010 by conjugation from Escherichia coli to Streptomyces lividans and Mycobacterium smegmatisQ39945627
Toluene transposons Tn4651 and Tn4653 are class II transposonsQ39948254
High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.Q39997065
probeBase--an online resource for rRNA-targeted oligonucleotide probes: new features 2007.Q40105290
Development and application of a dapB-based in vivo expression technology system to study colonization of rice by the endophytic nitrogen-fixing bacterium Pseudomonas stutzeri A15.Q40171959
Energetic components VirD4, VirB11 and VirB4 mediate early DNA transfer reactions required for bacterial type IV secretion.Q41993702
Plasmid pBP136 from Bordetella pertussis represents an ancestral form of IncP-1beta plasmids without accessory mobile elements.Q42605811
Naphthalene degrading genes on plasmid NAH7 are on a defective transposonQ42632561
Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676.Q42693452
Direct Detection and Quantification of Horizontal Gene Transfer by Using Flow Cytometry and gfp as a Reporter GeneQ44594600
Genes encoding a cellulosic polymer contribute toward the ecological success of Pseudomonas fluorescens SBW25 on plant surfacesQ44663074
Conjugative gene transfer in marine cyanobacteria: Synechococcus sp., Synechocystis sp. and Pseudanabaena sp.Q44691850
The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmidsQ46095586
Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut.Q46247315
Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteriaQ46459432
Monitoring the conjugal transfer of plasmid RP4 in activated sludge and in situ identification of the transconjugantsQ47966545
Conjugative transfer of RP4-oriT shuttle vectors from Escherichia coli to Clostridium perfringens.Q48039411
Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samples.Q50676996
Bacterial plasmid conjugation on semi-solid surfaces monitored with the green fluorescent protein (GFP) from Aequorea victoria as a marker.Q50754751
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectsingle-cell analysisQ15635432
soil bacterial communityQ121267935
bacterial communityQ129982151
P304page(s)138-145
P577publication date2013-10-18
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleSingle-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community
P478volume80

Reverse relations

cites work (P2860)
Q89494857A Human Lung-Associated Streptomyces sp. TR1341 Produces Various Secondary Metabolites Responsible for Virulence, Cytotoxicity and Modulation of Immune Response
Q30662199Acetogenesis from H2 plus CO2 and nitrogen fixation by an endosymbiotic spirochete of a termite-gut cellulolytic protist
Q39785100Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community
Q35816930Conjugative transfer of a derivative of the IncP-1α plasmid RP4 and establishment of transconjugants in the indigenous bacterial community of poplar plants
Q47833980Deciphering conjugative plasmid permissiveness in wastewater microbiomes
Q42375771Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions
Q52806951Dominant ectosymbiotic bacteria of cellulolytic protists in the termite gut also have the potential to digest lignocellulose.
Q35888423Effects of carbazole-degradative plasmid pCAR1 on biofilm morphology in Pseudomonas putida KT2440.
Q38971559Evolution of cyclizing 5-aminolevulinate synthases in the biosynthesis of actinomycete secondary metabolites: outcomes for genetic screening techniques
Q34058454Flow cytometry and real-time quantitative PCR as tools for assessing plasmid persistence
Q50059560Fluorescence recovery allows the implementation of a fluorescence reporter gene platform applicable for the detection and quantification of horizontal gene transfer in anoxic environments
Q35233714Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy
Q37512524Host Range of the Conjugative Transfer System of IncP-9 Naphthalene-Catabolic Plasmid NAH7 and Characterization of Its oriT Region and Relaxase
Q42292587Interaction of Bacterial Membrane Vesicles with Specific Species and Their Potential for Delivery to Target Cells
Q42373497Metal stressors consistently modulate bacterial conjugal plasmid uptake potential in a phylogenetically conserved manner
Q59128288Novel Self-Transmissible and Broad-Host-Range Plasmids Exogenously Captured From Anaerobic Granules or Cow Manure
Q41948466Novel assay to measure the plasmid mobilizing potential of mixed microbial communities
Q35781041Plasmid Detection, Characterization, and Ecology
Q57918393Protocol for Evaluating the Permissiveness of Bacterial Communities Toward Conjugal Plasmids by Quantification and Isolation of Transconjugants
Q92432693Selection for antimicrobial resistance is reduced when embedded in a natural microbial community
Q34672183Temperature-dependent variations in sulfate-reducing communities associated with a terrestrial hydrocarbon seep
Q39080041The behavior of mobile genetic elements (MGEs) in different environments
Q43113427Transferable antibiotic resistance plasmids from biogas plant digestates often belong to the IncP-1ε subgroup
Q89915169Zinc can counteract selection for ciprofloxacin resistance

Search more.