Lateral gene transfer, bacterial genome evolution, and the Anthropocene

scientific article published on 5 October 2016

Lateral gene transfer, bacterial genome evolution, and the Anthropocene is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

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P356DOI10.1111/NYAS.13213
P698PubMed publication ID27706829

P50authorMichael R. GillingsQ51470263
P2860cites workAfter 30 years of study, the bacterial SOS response still surprises usQ21092806
Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elementsQ21135543
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Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine AgricultureQ37123068
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Antibiotics and antibiotic resistance in water environmentsQ37183790
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Prokaryotic evolution and the tree of life are two different thingsQ37385941
Gene cassettes and cassette arrays in mobile resistance integrons.Q37470852
Integrative and Conjugative Elements (ICEs): What They Do and How They WorkQ37529766
Conjugative plasmids: vessels of the communal gene poolQ37538155
Call of the wild: antibiotic resistance genes in natural environmentsQ37700168
Does the wide use of quaternary ammonium compounds enhance the selection and spread of antimicrobial resistance and thus threaten our health?Q37724848
Fate of antibiotics during municipal water recycling treatment processes.Q37771500
Mobility of plasmids.Q37784107
Aquatic systems: maintaining, mixing and mobilising antimicrobial resistance?Q37860584
Gene flow, mobile genetic elements and the recruitment of antibiotic resistance genes into Gram-negative pathogensQ37868656
Combinatorial events of insertion sequences and ICE in Gram-negative bacteriaQ37897646
The role of reticulate evolution in creating innovation and complexityQ21296637
Extracellular DNA Required for Bacterial Biofilm FormationQ22065541
Prokaryotes: the unseen majorityQ22066200
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome"Q22066389
DNA uptake during bacterial transformationQ22121988
Lateral gene transfer and the nature of bacterial innovationQ22122396
Comparison of 61 sequenced Escherichia coli genomesQ24614300
ACLAME: a CLAssification of Mobile genetic Elements, update 2010Q24644500
Horizontal gene transfer among genomes: the complexity hypothesisQ24651300
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic worldQ24653367
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Management options for reducing the release of antibiotics and antibiotic resistance genes to the environmentQ26827456
Ancient and modern environmental DNAQ27005869
Horizontal gene transfer and the evolution of bacterial and archaeal population structureQ27006506
Antibiotics as a selective driver for conjugation dynamicsQ27313286
Antimicrobial-induced DNA damage and genomic instability in microbial pathogensQ27693195
A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: integronsQ27976520
Pseudomonas aeruginosa Genomic Structure and DiversityQ28244678
A common mechanism of cellular death induced by bactericidal antibioticsQ28246128
Mechanisms of, and barriers to, horizontal gene transfer between bacteriaQ28270244
Antibiotic-induced lateral transfer of antibiotic resistanceQ28279661
Bacterial genome instabilityQ28657639
The SOS response controls integron recombination.Q29346620
Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons.Q29346731
Horizontal gene transfer in prokaryotes: quantification and classificationQ29616017
Marine viruses--major players in the global ecosystemQ29616822
Prokaryotic evolution in light of gene transferQ29617350
Origins and evolution of antibiotic resistanceQ29617791
Marine viruses and their biogeochemical and ecological effectsQ30720057
Microbial DNA records historical delivery of anthropogenic mercuryQ30968495
Genome trees and the tree of lifeQ31103613
Uncultured soil bacteria are a reservoir of new antibiotic resistance genesQ33205796
The evolution of class 1 integrons and the rise of antibiotic resistanceQ33335636
Influence of ciprofloxacin and vancomycin on mutation rate and transposition of IS256 in Staphylococcus aureusQ43422435
SOS response induction by beta-lactams and bacterial defense against antibiotic lethalityQ45016731
Intercellular nanotubes mediate bacterial communication.Q45941890
Horizontal gene transfer accelerates genome innovation and evolution.Q45961682
Genomic diversity and evolution within the species Streptococcus agalactiaeQ46626837
Metabolic cross-feeding via intercellular nanotubes among bacteriaQ46769311
Microbial taxonomy in the post-genomic era: rebuilding from scratch?Q46795421
Present-day mercury resistance transposons are common in bacteria preserved in permafrost grounds since the Upper Pleistocene.Q47257926
Origins of life: born in a watery communeQ47354744
Tn5060 from the Siberian permafrost is most closely related to the ancestor of Tn21 prior to integron acquisitionQ47447843
Population genomics: how bacterial species form and why they don't existQ47651772
The Anthropocene: are humans now overwhelming the great forces of Nature?Q47715763
Integration of horizontally transferred genes into regulatory interaction networks takes many million yearsQ47727235
Tn5053 family transposons are res site hunters sensing plasmidal res sites occupied by cognate resolvasesQ47931334
Tackling antibiotic resistance: the environmental frameworkQ48544038
Occurrence and characteristics of class 1, 2 and 3 integrons in Escherichia coli, Salmonella and Campylobacter spp. in the NetherlandsQ50073601
Plasmids of the same Inc groups in Enterobacteria before and after the medical use of antibioticsQ50210040
Ecology drives a global network of gene exchange connecting the human microbiome.Q51171065
Biased gene transfer in microbial evolution.Q53085305
Sulfonamide resistance: mechanisms and trends.Q53999423
Broad diversity of conjugative plasmids in integron-carrying bacteria from wastewater environments.Q54340652
Is exposure to mercury a driving force for the carriage of antibiotic resistance genes?Q54388466
Adaptive evolution of bacterial metabolic networks by horizontal gene transfer.Q54474627
Horizontal gene transfer depends on gene content of the host.Q54477925
Conjugative plasmids in bacteria of the 'pre-antibiotic' era.Q54498786
Whole-Genome Analysis of Photosynthetic ProkaryotesQ56680896
Ecology and evolution of sex in aphidsQ56814339
Co-selection of antibiotic and heavy metal resistance in freshwater bacteriaQ56979506
Microbiology of the AnthropoceneQ57007085
Cycling of extracellular DNA in the soil environmentQ57070154
Antibiotic-Induced Replication Stress Triggers Bacterial Competence by Increasing Gene Dosage near the OriginQ57825326
Diverse aadA gene cassettes on class 1 integrons introduced into soil via spread manureQ33478785
Wastewater bacterial communities bring together broad-host range plasmids, integrons and a wide diversity of uncharacterized gene cassettesQ33518107
Mobile antibiotic resistance encoding elements promote their own diversityQ33519503
Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEsQ33521306
Network analyses structure genetic diversity in independent genetic worldsQ33591742
Generation of genic diversity among Streptococcus pneumoniae strains via horizontal gene transfer during a chronic polyclonal pediatric infectionQ33700577
Integrons: past, present, and future.Q33743517
Incidence of class 1 integrons in a quaternary ammonium compound-polluted environmentQ33770001
Gram-positive bacteria are a major reservoir of Class 1 antibiotic resistance integrons in poultry litterQ33782927
The shared antibiotic resistome of soil bacteria and human pathogensQ33804392
Coral-mucus-associated Vibrio integrons in the Great Barrier Reef: genomic hotspots for environmental adaptationQ33804889
Humans as the world's greatest evolutionary forceQ33954568
Phage as agents of lateral gene transferQ33967977
Incidence of class 1 and 2 integrases in clinical and commensal bacteria from livestock, companion animals, and exotics.Q33981591
Transposons Tn1696 and Tn21 and their integrons In4 and In2 have independent originsQ33981966
The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugationQ34005318
Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludgeQ34053442
Highways of gene sharing in prokaryotesQ34063510
Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmidsQ34119158
High Frequency of Horizontal Gene Transfer in the OceansQ34142279
Ancient horizontal gene transferQ34174227
Prokaryote genome fluidity: toward a system approach of the mobilome.Q34238543
Evolution of variation in presence and absence of genes in bacterial pathwaysQ34240776
Genes lost and genes found: evolution of bacterial pathogenesis and symbiosisQ34250498
SOS response promotes horizontal dissemination of antibiotic resistance genesQ34285480
Genome mosaicism and organismal lineages.Q34316533
Shaping bacterial genomes with integrative and conjugative elementsQ34327965
Phosphate concentration and the putative sensor kinase protein CckA modulate cell lysis and release of the Rhodobacter capsulatus gene transfer agentQ34368015
Bacterial vesicles in marine ecosystemsQ34396893
Bacterial transformation: distribution, shared mechanisms and divergent controlQ34403233
Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococciQ34409956
Pollution from drug manufacturing: review and perspectivesQ34423503
Horizontal gene transfer, genome innovation and evolutionQ34447824
Switches in bacteriophage lambda developmentQ34467169
The interconnection between biofilm formation and horizontal gene transferQ37996597
Are humans increasing bacterial evolvability?Q37998201
The antibiotic resistomeQ38029141
Induction of competence for genetic transformation by antibiotics: convergent evolution of stress responses in distant bacterial species lacking SOS?Q38036489
The role of bacterial outer membrane vesicles for intra- and interspecies deliveryQ38066246
The role of the natural environment in the emergence of antibiotic resistance in gram-negative bacteriaQ38076545
Exploring the costs of horizontal gene transfer.Q38109292
Conjugative and mobilizable genomic islands in bacteria: evolution and diversity.Q38174149
Microbiological effects of sublethal levels of antibiotics.Q38214805
Impact of spontaneous prophage induction on the fitness of bacterial populations and host-microbe interactionsQ38268995
Bacterial antimicrobial metal ion resistance.Q38270762
Bacteriophage-mediated spread of bacterial virulence genes.Q38295446
The dualistic nature of integrative and conjugative elementsQ38498279
Everyman's Guide to Bacterial Insertion SequencesQ38536141
Horizontal gene transfer: building the web of life.Q38549036
The Tn3-family of Replicative TransposonsQ38583042
Aquaculture as yet another environmental gateway to the development and globalisation of antimicrobial resistanceQ38809523
Soil-borne reservoirs of antibiotic-resistant bacteria are established following therapeutic treatment of dairy calves.Q39183682
The SOS Response Master Regulator LexA Regulates the Gene Transfer Agent of Rhodobacter capsulatus and Represses Transcription of the Signal Transduction Protein CckA.Q39256614
Genomic islands 1 and 2 play key roles in the evolution of extensively drug-resistant ST235 isolates of Pseudomonas aeruginosa.Q39879069
Source, occurrence and fate of antibiotics in the Italian aquatic environment.Q39932542
Architecture and Characteristics of Bacterial NanotubesQ39975579
Occurrence and persistence of antibiotic resistance genes in river biofilms after wastewater inputs in small riversQ40167129
Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken, and Human FecesQ40229288
Impacts of reclaimed water irrigation on soil antibiotic resistome in urban parks of Victoria, AustraliaQ40342070
Antibiotic concentration and antibiotic-resistant bacteria in two shallow urban lakes after stormwater eventQ40351801
Sampling the antibiotic resistomeQ40357052
Live cell imaging of SOS and prophage dynamics in isogenic bacterial populationsQ40668340
Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments.Q40755560
Minimal selective concentrations of tetracycline in complex aquatic bacterial biofilms.Q40769264
An assay for determining minimal concentrations of antibiotics that drive horizontal transfer of resistance.Q40820925
Differential roles of antimicrobials in the acquisition of drug resistance through activation of the SOS response in Acinetobacter baumanniiQ41036115
Homologues of Genetic Transformation DNA Import Genes Are Required for Rhodobacter capsulatus Gene Transfer Agent Recipient Capability Regulated by the Response Regulator CtrAQ41703108
Selection of a multidrug resistance plasmid by sublethal levels of antibiotics and heavy metalsQ41712060
Comparative study of class 1 integron and Vibrio cholerae superintegron integrase activitiesQ42025330
Potential impacts of aquatic pollutants: sub-clinical antibiotic concentrations induce genome changes and promote antibiotic resistance.Q42057187
Evidence for dynamic exchange of qac gene cassettes between class 1 integrons and other integrons in freshwater biofilmsQ42621940
Class 1 integrons in benthic bacterial communities: abundance, association with Tn402-like transposition modules and evidence for coselection with heavy-metal resistance.Q43168574
Influence of industrial contamination on mobile genetic elements: class 1 integron abundance and gene cassette structure in aquatic bacterial communitiesQ43168810
beta-lactam antibiotics induce the SOS response and horizontal transfer of virulence factors in Staphylococcus aureusQ43259790
Exploring the Role of Coliform Bacteria in Class 1 Integron Carriage and Biofilm Formation During Drinking Water Treatment.Q43347768
Correlation between upstream human activities and riverine antibiotic resistance genesQ43350186
Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant.Q43362303
In 2035, will all bacteria be multiresistant? Yes.Q43406883
Integron prevalence and diversity in manured soilQ34487960
Antibiotic resistance gene abundances associated with waste discharges to the Almendares River near Havana, CubaQ34505354
Of what use is sex to bacteria?Q34562948
Identification and characterization of integron-mediated antibiotic resistance in the phytopathogen Xanthomonas oryzae pv. oryzaeQ34598331
Aeons of distress: an evolutionary perspective on the bacterial SOS response.Q34691348
Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotesQ34729654
Lateral gene transfer challenges principles of microbial systematics.Q34771047
Local mobile gene pools rapidly cross species boundaries to create endemicity within global Vibrio cholerae populationsQ34777542
Defining the mobilomeQ34959127
Class 1 integrons potentially predating the association with tn402-like transposition genes are present in a sediment microbial communityQ34976781
Environmental pollution by antibiotics and by antibiotic resistance determinantsQ34989442
When phage, plasmids, and transposons collide: genomic islands, and conjugative- and mobilizable-transposons as a mosaic continuumQ35013459
Diversity and evolution of AbaR genomic resistance islands in Acinetobacter baumannii strains of European clone I.Q35065744
Explaining microbial genomic diversity in light of evolutionary ecologyQ35109746
Impacts of anthropogenic activity on the ecology of class 1 integrons and integron-associated genes in the environmentQ35135774
What traits are carried on mobile genetic elements, and why?Q35246646
A role for Tn6029 in the evolution of the complex antibiotic resistance gene loci in genomic island 3 in enteroaggregative hemorrhagic Escherichia coli O104:H4.Q35559889
Ancient horizontal gene transfer and the last common ancestorsQ35595309
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollutionQ35626365
Genomic islands in pathogenic and environmental microorganismsQ35752419
The evolutionary dynamics of integrons in changing environments.Q35915814
The infinitely many genes model for the distributed genome of bacteria.Q35930255
Survival strategies of infectious biofilmsQ36003660
Mobile genetic elements are involved in bacterial socialityQ36105870
Studying plasmid horizontal transfer in situ: a critical reviewQ36247073
The ins and outs of DNA transfer in bacteria.Q36328634
Quorum sensing and DNA release in bacterial biofilmsQ36418307
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectanthropoceneQ26841
horizontal gene transferQ83185
bacterial evolutionQ115395667
P304page(s)20-36
P577publication date2016-10-05
P1433published inAnnals of the New York Academy of SciencesQ2431664
P1476titleLateral gene transfer, bacterial genome evolution, and the Anthropocene
P478volume1389

Reverse relations

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