Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge

scientific article

Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2011PLoSO...626041Z
P356DOI10.1371/JOURNAL.PONE.0026041
P932PMC publication ID3189950
P698PubMed publication ID22016806
P5875ResearchGate publication ID51733505

P50authorLin YeQ56988609
P2093author name stringTong Zhang
Xu-Xiang Zhang
P2860cites workPyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elementsQ21135543
Genome sequence of the plant pathogen Ralstonia solanacearumQ22122347
ISfinder: the reference centre for bacterial insertion sequencesQ24538230
A human gut microbial gene catalogue established by metagenomic sequencingQ24618931
The Chlamydia trachomatis plasmid is a transcriptional regulator of chromosomal genes and a virulence factorQ24642084
INTEGRALL: a database and search engine for integrons, integrases and gene cassettesQ48674051
Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technologyQ57971824
Presence of plasmid pA15 correlates with prevalence of constitutive MLS(B) resistance in group A streptococcal isolates at a university hospital in southern TaiwanQ80218837
Estimating DNA coverage and abundance in metagenomes using a gamma approximationQ24654673
The KEGG resource for deciphering the genomeQ27860687
DNA transposons: nature and applications in genomicsQ28751993
Comparative metagenomics of microbial communitiesQ29555844
eggNOG: automated construction and annotation of orthologous groups of genesQ30002345
Update on macrolide-lincosamide-streptogramin, ketolide, and oxazolidinone resistance genesQ31152057
Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiomeQ33525169
Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soilsQ33832108
Occurrence, abundance, and diversity of tetracycline resistance genes in 15 sewage treatment plants across China and other global locationsQ33841348
Occurrence, abundance and elimination of class 1 integrons in one municipal sewage treatment plantQ33853838
Analysis of the bacterial community in a laboratory-scale nitrification reactor and a wastewater treatment plant by 454-pyrosequencing.Q33943054
Ferric dicitrate transport system (Fec) of Shigella flexneri 2a YSH6000 is encoded on a novel pathogenicity island carrying multiple antibiotic resistance genesQ34009180
Molecular mechanisms of antibacterial multidrug resistanceQ34611916
VFDB 2008 release: an enhanced web-based resource for comparative pathogenomicsQ36454089
Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene poolQ36841958
Antimicrobial resistance: its emergence and transmissionQ37356533
Antibiotic resistance genes in water environmentQ37364488
Gene cassettes and cassette arrays in mobile resistance integrons.Q37470852
ARDB--Antibiotic Resistance Genes DatabaseQ38512415
MetaGene: prokaryotic gene finding from environmental genome shotgun sequencesQ39118049
Antimicrobial resistance patterns in Enterobacteriaceae isolated from an urban wastewater treatment plantQ39783381
Adaptation of Xanthobacter autotrophicus GJ10 to bromoacetate due to activation and mobilization of the haloacetate dehalogenase gene by insertion element IS1247Q39835895
Environmental Vibrio spp., isolated in Mozambique, contain a polymorphic group of integrative conjugative elements and class 1 integronsQ39837521
Cloning and DNA sequence analysis of an aac(3)-Vb gene from Serratia marcescensQ40088580
Characterization of ermB gene transposition by Tn1545 and Tn917 in macrolide-resistant Streptococcus pneumoniae isolatesQ40771835
A computational genomics pipeline for prokaryotic sequencing projectsQ41866812
Mobilizable IncQ-related plasmid carrying a new quinolone resistance gene, qnrS2, isolated from the bacterial community of a wastewater treatment plantQ42027647
Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome.Q42604612
Nucleotide sequence, organization and characterization of the (halo)aromatic acid catabolic plasmid pA81 from Achromobacter xylosoxidans A8.Q42644532
Comparison of two DNA microarrays for detection of plasmid-mediated antimicrobial resistance and virulence factor genes in clinical isolates of Enterobacteriaceae and non-EnterobacteriaceaeQ42918830
Characterization and quantification of class 1 integrons and associated gene cassettes in sewage treatment plantsQ43168714
Occurrence of integron-associated resistance gene cassettes located on antibiotic resistance plasmids isolated from a wastewater treatment plantQ43169239
Detection of antibiotic-resistant bacteria and their resistance genes in wastewater, surface water, and drinking water biofilmsQ43283145
Sequence of the 68,869 bp IncP-1alpha plasmid pTB11 from a waste-water treatment plant reveals a highly conserved backbone, a Tn402-like integron and other transposable elementsQ43320985
Tetracycline resistance genes in activated sludge wastewater treatment plantsQ43343277
Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant.Q43362303
The 64 508 bp IncP-1β antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1β groupQ43368119
Tetracycline resistance genes and tetracycline resistant lactose-fermenting Enterobacteriaceae in activated sludge of sewage treatment plantsQ43369466
The 79,370-bp conjugative plasmid pB4 consists of an IncP-1beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of thQ44317421
The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1beta group without any accessory genesQ45140765
Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport systemQ45140771
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue10
P407language of work or nameEnglishQ1860
P921main subjectantibiotic resistanceQ380775
P304page(s)e26041
P577publication date2011-10-10
P1433published inPLOS OneQ564954
P1476titlePlasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge
P478volume6

Reverse relations

cites work (P2860)
Q36020644"Every Gene Is Everywhere but the Environment Selects": Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis
Q36841245A brief multi-disciplinary review on antimicrobial resistance in medicine and its linkage to the global environmental microbiota.
Q87892733A closer look at the antibiotic-resistant bacterial community found in urban wastewater treatment systems
Q55109326Abundances of Clinically Relevant Antibiotic Resistance Genes and Bacterial Community Diversity in the Weihe River, China.
Q53601945Abundant rifampin resistance genes and significant correlations of antibiotic resistance genes and plasmids in various environments revealed by metagenomic analysis.
Q35223548An improved method for including upper size range plasmids in metamobilomes
Q39062989Antibiotic Resistant Superbugs: Assessment of the Interrelationship of Occurrence in Clinical Settings and Environmental Niches.
Q50088944Antibiotic residues in liquid manure from swine feedlot and their effects on nearby groundwater in regions of North China
Q57897928Antibiotic resistance genes occurrence and bacterial community composition in the Liuxi River
Q40089937Antibiotic resistance, antimicrobial residues and bacterial community composition in urban wastewater
Q40628855Antimicrobial resistance of Pseudomonas spp. isolated from wastewater and wastewater-impacted marine coastal zone
Q39044602Application of genomic technologies to measure and monitor antibiotic resistance in animals
Q57529466Bacterial Communities and Antibiotic Resistance Communities in a Full-Scale Hospital Wastewater Treatment Plant by High-Throughput Pyrosequencing
Q27024003Bacterial diversity and antibiotic resistance in water habitats: searching the links with the human microbiome
Q36049667Chronic exposure to triclosan sustains microbial community shifts and alters antibiotic resistance gene levels in anaerobic digesters
Q40412007Co-occurrence of antibiotic and metal resistance genes revealed in complete genome collection
Q34432441Co-occurrence of resistance to different antibiotics among aquatic bacteria
Q64059370Comparative Genomic Analysis of : An Overview
Q55416519Comparison of Database Search Methods for the Detection of Legionella pneumophila in Water Samples Using Metagenomic Analysis.
Q35000477Comparison of microbial communities in sequencing batch reactors (SBRs) exposed to trace erythromycin and erythromycin-H₂O.
Q33982055Comparison of the rhizosphere bacterial communities of Zigongdongdou soybean and a high-methionine transgenic line of this cultivar
Q36653839Diverse and abundant antibiotic resistance genes in Chinese swine farms
Q92684491Early-life gut microbiome modulation reduces the abundance of antibiotic-resistant bacteria
Q35620149Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations
Q43332665Effect from low-level exposure of oxytetracycline on abundance of tetracycline resistance genes in arable soils
Q43024700Effect of temperature on removal of antibiotic resistance genes by anaerobic digestion of activated sludge revealed by metagenomic approach
Q89805698Effects of Composting Different Types of Organic Fertilizer on the Microbial Community Structure and Antibiotic Resistance Genes
Q35581108Enhanced horizontal transfer of antibiotic resistance genes in freshwater microcosms induced by an ionic liquid
Q60046166Epidemiological Evidence and Health Risks Associated With Agricultural Reuse of Partially Treated and Untreated Wastewater: A Review
Q31105455Evolutionary analyses of non-genealogical bonds produced by introgressive descent
Q36098309Exploring antibiotic resistance genes and metal resistance genes in plasmid metagenomes from wastewater treatment plants
Q87998419Fate of antibiotic and metal resistance genes during two-phase anaerobic digestion of residue sludge revealed by metagenomic approach
Q43318884Fate of antibiotic resistance genes in sewage treatment plant revealed by metagenomic approach.
Q89965227Fifteen-Year Application of Manure and Chemical Fertilizers Differently Impacts Soil ARGs and Microbial Community Structure
Q97521331First Report on the Plasmidome From a High-Altitude Lake of the Andean Puna
Q38973296Functional Metagenomics as a Tool for Identification of New Antibiotic Resistance Genes from Natural Environments
Q26849337Functional metagenomics for the investigation of antibiotic resistance
Q39012887Genomic and metagenomic technologies to explore the antibiotic resistance mobilome
Q35233714Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy
Q36050344High Levels of Antibiotic Resistance Genes and Their Correlations with Bacterial Community and Mobile Genetic Elements in Pharmaceutical Wastewater Treatment Bioreactors
Q38804628How Should We Be Determining Background and Baseline Antibiotic Resistance Levels in Agroecosystem Research?
Q34627067Human health implications of clinically relevant bacteria in wastewater habitats
Q35087738Hundreds of circular novel plasmids and DNA elements identified in a rat cecum metamobilome
Q42231628Identification of a metagenomic gene cluster containing a new class A beta-lactamase and toxin-antitoxin systems
Q38779338Impact of Veterinary Pharmaceuticals on the Agricultural Environment: A Re-inspection
Q35589786Influence of a non-hospital medical care facility on antimicrobial resistance in wastewater
Q34262431Insights into the bovine rumen plasmidome
Q33743517Integrons: past, present, and future.
Q38083019Investigating antibiotic resistance in non-clinical environments.
Q64102091Large Circular Plasmids from Groundwater Plasmidomes Span Multiple Incompatibility Groups and Are Enriched in Multimetal Resistance Genes
Q40515882Lateral gene transfer, bacterial genome evolution, and the Anthropocene
Q40486088Limited dissemination of the wastewater treatment plant core resistome.
Q33755903Marine microbial metagenomics: from individual to the environment
Q44208835Marine sediment bacteria harbor antibiotic resistance genes highly similar to those found in human pathogens
Q42408259Mechanism and Effect of Temperature on Variations in Antibiotic Resistance Genes during Anaerobic Digestion of Dairy Manure
Q28552021Metabolomics Analysis Reveals the Participation of Efflux Pumps and Ornithine in the Response of Pseudomonas putida DOT-T1E Cells to Challenge with Propranolol
Q35741493Metagenomic Analysis of Antibiotic Resistance Genes in Dairy Cow Feces following Therapeutic Administration of Third Generation Cephalosporin
Q53790452Metagenomic Comparison of Antibiotic Resistance Genes Associated with Liquid and Dewatered Biosolids.
Q48042835Metagenomic analysis of microbial communities yields insight into impacts of nanoparticle design
Q100945966Metagenomic characterization of bacterial community and antibiotic resistance genes in representative ready-to-eat food in southern China
Q37627573Metagenomic frameworks for monitoring antibiotic resistance in aquatic environments
Q43350777Metagenomic insights into chlorination effects on microbial antibiotic resistance in drinking water
Q30999668Metagenomic insights into tetracycline effects on microbial community and antibiotic resistance of mouse gut.
Q35009233Metagenomic profiling of antibiotic resistance genes and mobile genetic elements in a tannery wastewater treatment plant
Q36354000Metagenomic profiling of microbial composition and antibiotic resistance determinants in Puget Sound
Q37692518Metagenomics and novel gene discovery: promise and potential for novel therapeutics.
Q33919222Metagenomics of urban sewage identifies an extensively shared antibiotic resistome in China.
Q92768657Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics
Q64066680Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing
Q39699337Persistence of antibiotic resistance and plasmid-associated genes in soil following application of sewage sludge and abundance on vegetables at harvest
Q49964207PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures
Q35781041Plasmid Detection, Characterization, and Ecology
Q34207402Plasmid-encoded tetracycline efflux pump protein alters bacterial stress responses and ecological fitness of Acinetobacter oleivorans
Q89532740Plasmids persist in a microbial community by providing fitness benefit to multiple phylotypes
Q34423503Pollution from drug manufacturing: review and perspectives
Q43686869Previously undescribed plasmids recovered from activated sludge confer tetracycline resistance and phenotypic changes to Acinetobacter oleivorans DR1.
Q101166544Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics
Q39854828Seasonality of antibiotic prescriptions for outpatients and resistance genes in sewers and wastewater treatment plant outflow.
Q57064558Send more data: a systematic review of mathematical models of antimicrobial resistance
Q35644349Strategies and approaches in plasmidome studies-uncovering plasmid diversity disregarding of linear elements?
Q36660938Survival of Antibiotic Resistant Bacteria and Horizontal Gene Transfer Control Antibiotic Resistance Gene Content in Anaerobic Digesters
Q99418320Swine liquid manure: a hotspot of mobile genetic elements and antibiotic resistance genes
Q89920739The Contribution of Wastewater to the Transmission of Antimicrobial Resistance in the Environment: Implications of Mass Gathering Settings
Q88977244The changes of bacterial communities and antibiotic resistance genes in microbial fuel cells during long-term oxytetracycline processing
Q36830408The effects of salinity on nitrification using halophilic nitrifiers in a Sequencing Batch Reactor treating hypersaline wastewater
Q35999145The horizontal transfer of antibiotic resistance genes is enhanced by ionic liquid with different structure of varying alkyl chain length
Q34969983The impact of triclosan on the spread of antibiotic resistance in the environment
Q101226292The persistence potential of transferable plasmids
Q42531884The rumen plasmidome: A genetic communication hub for the rumen microbiome
Q26751056Towards an Enhanced Understanding of Plant-Microbiome Interactions to Improve Phytoremediation: Engineering the Metaorganism
Q35691244Transfer of energy pathway genes in microbial enhanced biological phosphorus removal communities

Search more.