Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture

scientific article published on 12 April 2016

Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/MBIO.02214-15
P932PMC publication ID4959523
P698PubMed publication ID27073098

P50authorJames M. TiedjeQ15995540
Syed A. HashshamQ41587443
Yong-Guan ZhuQ38360170
P2093author name stringQiong Wang
James R Cole
Robert D Stedtfeld
Timothy A Johnson
Torey Looft
P2860cites workWhen the most potent combination of antibiotics selects for the greatest bacterial load: the smile-frown transitionQ21145725
Lateral gene transfer and the nature of bacterial innovationQ22122396
Comparative genomics of multidrug resistance in Acinetobacter baumanniiQ25256737
Antibiotic resistance is ancientQ27672681
Human intestinal bacteria as reservoirs for antibiotic resistance genesQ28279671
Food animals and antimicrobials: impacts on human healthQ28392729
UCHIME improves sensitivity and speed of chimera detectionQ29547664
Bad bugs, no drugs: no ESKAPE! An update from the Infectious Diseases Society of AmericaQ29616084
Insertion sequencesQ29617579
Origins and evolution of antibiotic resistanceQ29617791
Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.Q30651139
Ribosomal Database Project: data and tools for high throughput rRNA analysisQ30703827
Sampling the antibiotic resistomeQ40357052
IncP-1ε Plasmids are Important Vectors of Antibiotic Resistance Genes in Agricultural Systems: Diversification Driven by Class 1 Integron Gene CassettesQ40482877
Solving the Antibiotic CrisisQ41490419
IS26-associated In4-type integrons forming multiresistance loci in enterobacterial plasmidsQ41943481
The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100.Q42685832
Class 1 integrons in benthic bacterial communities: abundance, association with Tn402-like transposition modules and evidence for coselection with heavy-metal resistance.Q43168574
Fate of antibiotic resistance genes and class 1 integrons in soil microcosms following the application of treated residual municipal wastewater solidsQ43316401
Correlation between upstream human activities and riverine antibiotic resistance genesQ43350186
Acquisition of multidrug resistance transposon Tn6061 and IS6100-mediated large chromosomal inversions in Pseudomonas aeruginosa clinical isolatesQ43981641
Little evidence for reversibility of trimethoprim resistance after a drastic reduction in trimethoprim use.Q44352147
Tetracycline and macrolide co-resistance in Streptococcus pyogenes: co-selection as a reason for increase in macrolide-resistant S. pyogenes?Q45070829
Piggery manure used for soil fertilization is a reservoir for transferable antibiotic resistance plasmidsQ46537060
Antibiotic resistance is ancient: implications for drug discoveryQ47230404
INTEGRALL: a database and search engine for integrons, integrases and gene cassettesQ48674051
Impacts of antibiotic use in agriculture: what are the benefits and risks?Q50453434
Changes in the use of antimicrobials and the effects on productivity of swine farms in Denmark.Q50551594
Ecology drives a global network of gene exchange connecting the human microbiome.Q51171065
Multidrug resistance-encoding plasmid from Aeromonas sp. strain P2G1.Q53370721
Glycopeptide resistance in Enterococcus faecium from broilers and pigs following discontinued use of avoparcin.Q54095569
Quantitative multiplex real-time PCR for detecting class 1, 2 and 3 integrons.Q54424593
Development of a quantitative real-time PCR method to enumerate total bacterial counts in ready-to-eat fruits and vegetables.Q54574286
Changes in intestinal flora of farm personnel after introduction of a tetracycline-supplemented feed on a farmQ54608687
Impact of Denmark's ban on antimicrobials for growth promotionQ57010474
What is a resistance gene? Ranking risk in resistomesQ86386159
The evolution of class 1 integrons and the rise of antibiotic resistanceQ33335636
Diverse aadA gene cassettes on class 1 integrons introduced into soil via spread manureQ33478785
Evidence of increasing antibiotic resistance gene abundances in archived soils since 1940.Q33520054
The shared antibiotic resistome of soil bacteria and human pathogensQ33804392
Bacterial phylogeny structures soil resistomes across habitatsQ33837847
Differential gene expression and adherence of Escherichia coli O157:H7 in vitro and in ligated pig intestinesQ33841013
Demonstrating microbial co-occurrence pattern analyses within and between ecosystemsQ33917852
Genomic interplay in bacterial communities: implications for growth promoting practices in animal husbandry.Q34031581
The Ellis Island Effect: A novel mobile element in a multi-drug resistant Bacteroides fragilis clinical isolate includes a mosaic of resistance genes from Gram-positive bacteria.Q34090373
Molecular mechanisms of antibacterial multidrug resistanceQ34611916
History of the use of antibiotic as growth promoters in European poultry feedsQ34705174
Accumulation of sulfonamide resistance genes in arable soils due to repeated application of manure containing sulfadiazineQ34739256
Detection and characterization of broad-host-range plasmids in environmental bacteria by PCR.Q35192180
Antibiotics, bacteria, and antibiotic resistance genes: aerial transport from cattle feed yards via particulate matterQ35250868
Chlortetracycline-resistant intestinal bacteria in organically raised and feral SwineQ35362139
Global trends in antimicrobial use in food animalsQ35590366
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollutionQ35626365
In-feed antibiotic effects on the swine intestinal microbiomeQ35749738
Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestockQ35759760
Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential.Q35844047
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genesQ36178854
Diverse and abundant antibiotic resistance genes in Chinese swine farmsQ36653839
Gene cassettes and cassette arrays in mobile resistance integrons.Q37470852
The agricultural antibiotic carbadox induces phage-mediated gene transfer in Salmonella.Q37575625
Call of the wild: antibiotic resistance genes in natural environmentsQ37700168
Are humans increasing bacterial evolvability?Q37998201
Treatment, promotion, commotion: antibiotic alternatives in food-producing animals.Q38087701
The antibiotic resistance "mobilome": searching for the link between environment and clinic.Q38113563
Bacterial insertion sequences: their genomic impact and diversityQ38185470
Microbiological effects of sublethal levels of antibiotics.Q38214805
Antibiotic resistance genes as emerging contaminants: studies in northern ColoradoQ39779224
Fate of tetracyclines in swine manure of three selected swine farms in ChinaQ40098913
P4510describes a project that usesCytoscapeQ3699942
RStudioQ4798119
P433issue2
P921main subjectagricultureQ11451
antibiotic resistanceQ380775
P304page(s)e02214-15
P577publication date2016-04-12
P1433published inmBioQ15817061
P1476titleClusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture
P478volume7

Reverse relations

cites work (P2860)
Q34546863A diverse intrinsic antibiotic resistome from a cave bacterium
Q90398096Antibiotic Resistance Genes in Antibiotic-Free Chicken Farms
Q50174326Antibiotic resistome in landfill leachate from different cities of China deciphered by metagenomic analysis
Q92545455Antibiotic treatment in feedlot cattle: a longitudinal study of the effect of oxytetracycline and tulathromycin on the fecal and nasopharyngeal microbiota
Q90290440Characterization of the Microbial Resistome in Conventional and "Raised Without Antibiotics" Beef and Dairy Production Systems
Q28595162Clinical and biological insights from viral genome sequencing
Q40412007Co-occurrence of antibiotic and metal resistance genes revealed in complete genome collection
Q51154986Community structure explains antibiotic resistance gene dynamics over a temperature gradient in soil.
Q64930980Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection.
Q91576219Continuing occurrence of vancomycin resistance determinants in Danish pig farms 20 years after removing exposure to avoparcin
Q61451485Contributions and Challenges of High Throughput qPCR for Determining Antimicrobial Resistance in the Environment: A Critical Review
Q93123239Deciphering extracellular antibiotic resistance genes (eARGs) in activated sludge by metagenome
Q90923899Deciphering of microbial community and antibiotic resistance genes in activated sludge reactors under high selective pressure of different antibiotics
Q91610788Effect of tetracycline treatment regimens on antibiotic resistance gene selection over time in nursery pigs
Q53687221Evidence for Environmental Dissemination of Antibiotic Resistance Mediated by Wild Birds.
Q89965227Fifteen-Year Application of Manure and Chemical Fertilizers Differently Impacts Soil ARGs and Microbial Community Structure
Q49279472Functional Repertoire of Antibiotic Resistance Genes in Antibiotic Manufacturing Effluents and Receiving Freshwater Sediments
Q52365735Genomic differences between nasal Staphylococcus aureus from hog slaughterhouse workers and their communities.
Q38808071Genomics and the evolution of antibiotic resistance
Q26748972Gut Microbiota and Metabolic Health: The Potential Beneficial Effects of a Medium Chain Triglyceride Diet in Obese Individuals
Q48045763Human dissemination of genes and microorganisms in Earth's Critical Zone
Q90135625Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems
Q50686027Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers.
Q40515882Lateral gene transfer, bacterial genome evolution, and the Anthropocene
Q64108274Manure and Doxycycline Affect the Bacterial Community and Its Resistome in Lettuce Rhizosphere and Bulk Soil
Q64066680Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing
Q40315196Plasmid Replicons from Pseudomonas Are Natural Chimeras of Functional, Exchangeable Modules
Q90569837Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements
Q28067678Review of Antimicrobial Resistance in the Environment and Its Relevance to Environmental Regulators
Q99418320Swine liquid manure: a hotspot of mobile genetic elements and antibiotic resistance genes
Q47174251The complex resistomes of Paenibacillaceae reflect diverse antibiotic chemical ecologies
Q38660899The potential implications of reclaimed wastewater reuse for irrigation on the agricultural environment: The knowns and unknowns of the fate of antibiotics and antibiotic resistant bacteria and resistance genes - A review.
Q92106519Variability of the Ability of Complex Microbial Communities to Exclude Microbes Carrying Antibiotic Resistance Genes in Rabbits
Q30235426Virulence factor activity relationships (VFARs): a bioinformatics perspective

Search more.