Contributions and Challenges of High Throughput qPCR for Determining Antimicrobial Resistance in the Environment: A Critical Review

article published in 2019

Contributions and Challenges of High Throughput qPCR for Determining Antimicrobial Resistance in the Environment: A Critical Review is …
instance of (P31):
meta-analysisQ815382
review articleQ7318358
scholarly articleQ13442814

External links are
P356DOI10.3390/MOLECULES24010163
P932PMC publication ID6337382
P698PubMed publication ID30609875

P50authorHassan WaseemQ61478161
P2093author name stringIsfahan Tauseef
Uzma Farooq
Sana Jameel
Asif Jamal
Hamza Saleem Ur Rehman
Jafar Ali
Muhammad Ishtiaq Ali
P2860cites workPrimer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elementsQ90569837
Short-term copper exposure as a selection pressure for antibiotic resistance and metal resistance in an agricultural soilQ91021716
Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studiesQ24676105
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencingQ24676617
Dissemination of Antimicrobial Resistance in Microbial Ecosystems through Horizontal Gene TransferQ26765870
Origin and proliferation of multiple-drug resistance in bacterial pathogensQ27023284
Analyzing real-time PCR data by the comparative C(T) methodQ28131831
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experimentsQ28236560
Virulence factor activity relationships (VFARs): a bioinformatics perspectiveQ30235426
Whole genome amplification and real-time PCR in forensic caseworkQ33430138
An optimized protocol for microarray validation by quantitative PCR using amplified amino allyl labeled RNAQ33712480
Limited influence of hospital wastewater on the microbiome and resistome of wastewater in a community sewerage systemQ63762390
Amendment soil with biochar to control antibiotic resistance genes under unconventional water resources irrigation: Proceed with cautionQ88651020
Impact of wastewater treatment plant discharge on the contamination of river biofilms by pharmaceuticals and antibiotic resistanceQ88897262
Antimicrobial Resistance in the EnvironmentQ89089013
Assessing the safety of thermally processed penicillin mycelial dreg following the soil application: Organic matter's maturation and antibiotic resistance genesQ89139508
Modeling Hybridization Kinetics of Gene Probes in a DNA Biochip Using FEMLAB.Q33844791
Microarray-based detection of 90 antibiotic resistance genes of gram-positive bacteriaQ33858940
The gut as reservoir of antibiotic resistance: microbial diversity of tetracycline resistance in mother and infantQ33955218
rrndb: the Ribosomal RNA Operon Copy Number DatabaseQ34314931
The human microbiome: a hot spot of microbial horizontal gene transfer.Q34355320
The antibiotic resistance crisis: part 1: causes and threatsQ34471028
Horizontal gene transfer and bacterial diversityQ34584184
A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteriaQ34613216
Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coliQ34691657
Taxonomic precision of different hypervariable regions of 16S rRNA gene and annotation methods for functional bacterial groups in biological wastewater treatmentQ35022666
Development of a DNA microarray to detect antimicrobial resistance genes identified in the National Center for Biotechnology Information databaseQ35049323
DNA microarray analysis reveals that antibiotic resistance-gene diversity in human gut microbiota is age relatedQ35117768
Horizontal gene exchange in environmental microbiotaQ35132724
Selective pressure of antibiotics on ARGs and bacterial communities in manure-polluted freshwater-sediment microcosmsQ35166892
Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR.Q35606156
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollutionQ35626365
In-feed antibiotic effects on the swine intestinal microbiomeQ35749738
Thirty-minute screening of antibiotic resistance genes in bacterial isolates with minimal sample preparation in static self-dispensing 64 and 384 assay cardsQ35977379
Screening Foodstuffs for Class 1 Integrons and Gene CassettesQ35981256
What are the factors driving antimicrobial resistance? Perspectives from a public event in London, England.Q36122019
Diverse and abundant antibiotic resistance genes in Chinese swine farmsQ36653839
Development and experimental validation of a predictive threshold cycle equation for quantification of virulence and marker genes by high-throughput nanoliter-volume PCR on the OpenArray platformQ36746773
Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine AgricultureQ37123068
Heatmapper: web-enabled heat mapping for allQ37182163
The Bacterial Mobile Resistome Transfer Network Connecting the Animal and Human MicrobiomesQ37378699
Occurrences and Characterization of Antibiotic-Resistant Bacteria and Genetic Determinants of Hospital Wastewater in a Tropical CountryQ37428722
The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish FarmsQ37562310
Differences in Integron Cassette Excision Dynamics Shape a Trade-Off between Evolvability and Genetic CapacitanceQ37727172
Gene flow, mobile genetic elements and the recruitment of antibiotic resistance genes into Gram-negative pathogensQ37868656
Antibiotics in the environment.Q38197282
Antibiotic resistance as a major public health concern: epidemiology and economic impact.Q38543671
Comparative gut microbiota and resistome profiling of intensive care patients receiving selective digestive tract decontamination and healthy subjectsQ38627222
Metagenomic analysis reveals wastewater treatment plants as hotspots of antibiotic resistance genes and mobile genetic elements.Q38688098
Metagenomic analysis reveals that bacteriophages are reservoirs of antibiotic resistance genes.Q38852023
Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markersQ50686027
Most probable number - loop mediated isothermal amplification (MPN-LAMP) for quantifying waterborne pathogens in <25minQ51062574
Horizontal gene transfer between bacteria.Q51700211
Antimicrobial resistance in human populations: challenges and opportunities.Q53713878
Implications of direct amplification for measuring antimicrobial resistance using point-of-care devices.Q53749612
Precipitation influences pathogenic bacteria and antibiotic resistance gene abundance in storm drain outfalls in coastal sub-tropical waters.Q54213593
Prevalence of antibiotic resistance in commensal Escherichia coli among the children in rural hill communities of Northeast India.Q55241452
An overview of technical considerations when using quantitative real-time PCR analysis of gene expression in human exercise research.Q55332989
Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environmentsQ60917737
Assessing the probability of detection of horizontal gene transfer events in bacterial populations.Q39648377
Interaction and effect of annealing temperature on primers used in differential display RT-PCR.Q39722724
Field-based evidence for copper contamination induced changes of antibiotic resistance in agricultural soils.Q39748382
Antibiotic resistance genes as emerging contaminants: studies in northern ColoradoQ39779224
Long-term field application of sewage sludge increases the abundance of antibiotic resistance genes in soil.Q39864450
Antimicrobial resistance dashboard application for mapping environmental occurrence and resistant pathogensQ40019468
High throughput profiling of antibiotic resistance genes in urban park soils with reclaimed water irrigationQ40209931
TCDD influences reservoir of antibiotic resistance genes in murine gut microbiomeQ40224852
Increased levels of antibiotic resistance in urban stream of Jiulongjiang River, ChinaQ40255725
Sulfonamide and tetracycline resistance genes in total- and culturable-bacterial assemblages in South African aquatic environmentsQ40307727
High-throughput profiling of antibiotic resistance genes in drinking water treatment plants and distribution systemsQ40353563
Long-Term Nickel Contamination Increases the Occurrence of Antibiotic Resistance Genes in Agricultural Soils.Q40428469
Application of Struvite Alters the Antibiotic Resistome in Soil, Rhizosphere, and Phyllosphere.Q40479640
High-throughput profiling and analysis of antibiotic resistance genes in East Tiaoxi River, China.Q40487097
Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments.Q40755560
Analytical Performance of Multiplexed Screening Test for 10 Antibiotic Resistance Genes from Perianal Swab SamplesQ40882628
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance islandQ41611086
Mechanism and Effect of Temperature on Variations in Antibiotic Resistance Genes during Anaerobic Digestion of Dairy ManureQ42408259
Changes of resistome, mobilome and potential hosts of antibiotic resistance genes during the transformation of anaerobic digestion from mesophilic to thermophilicQ43027236
Concentration-dependent activity of antibiotics in natural environmentsQ43245583
Correlation between upstream human activities and riverine antibiotic resistance genesQ43350186
Metagenomic insights into chlorination effects on microbial antibiotic resistance in drinking waterQ43350777
Metagenomic profiles of antibiotic resistance genes (ARGs) between human impacted estuary and deep ocean sedimentsQ43932788
Tetracycline resistance genes acquired at birthQ44211510
Environmental fate of tetracycline resistance genes originating from swine feedlots in river water.Q44985799
Antibiotic-Resistance Genes in Waste WaterQ46285246
The Divided Bacterial Genome: Structure, Function, and EvolutionQ46323290
Demographic analysis of antimicrobial resistance among Streptococcus pneumoniae: worldwide results from PROTEKT 1999-2000.Q46604128
Deciphering conjugative plasmid permissiveness in wastewater microbiomesQ47833980
Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysisQ48081041
The rate of horizontal transmission of antibiotic resistance plasmids is increased in food preservation-stressed bacteria.Q50067495
Spatial and temporal distribution of antibiotic resistomes in a peri-urban area is associated significantly with anthropogenic activities.Q50087612
A reservoir of 'historical' antibiotic resistance genes in remote pristine Antarctic soils.Q50347320
P275copyright licenseCreative Commons AttributionQ6905323
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectmicrobial ecologyQ3054637
biomedical investigative techniqueQ66648976
antimicrobial resistanceQ63391344
P304page(s)163
P577publication date2019-01-03
P1433published inMoleculesQ151332
P1476titleContributions and Challenges of High Throughput qPCR for Determining Antimicrobial Resistance in the Environment: A Critical Review
P478volume24

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cites work (P2860)
Q64091723Assessment of knowledge and attitude trends towards antimicrobial resistance (AMR) among the community members, pharmacists/pharmacy owners and physicians in district Sialkot, Pakistan
Q90701863Capturing the Resistome: a Targeted Capture Method To Reveal Antibiotic Resistance Determinants in Metagenomes

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