IHF and HU: flexible architects of bent DNA.

scientific article published on February 2004

IHF and HU: flexible architects of bent DNA. is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

External links are
P356DOI10.1016/J.SBI.2003.12.003
P698PubMed publication ID15102446

P2093author name stringPhoebe A Rice
Kerren K Swinger
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)28-35
P577publication date2004-02-01
P1433published inCurrent Opinion in Structural BiologyQ15758416
P1476titleIHF and HU: flexible architects of bent DNA.
P478volume14

Reverse relations

cites work (P2860)
Q33749733A Geometrical Model for DNA Organization in Bacteria
Q40131084A Human Biofilm-Disrupting Monoclonal Antibody Potentiates Antibiotic Efficacy in Rodent Models of both Staphylococcus aureus and Acinetobacter baumannii Infections
Q39956020A bacterial-biofilm-induced oral osteolytic infection can be successfully treated by immuno-targeting an extracellular nucleoid-associated protein
Q37263567A computational framework for mechanical response of macromolecules: application to the salt concentration dependence of DNA bendability
Q27324202A general approach to visualize protein binding and DNA conformation without protein labelling
Q36310357A model for chromosome organization during the cell cycle in live E. coli
Q36367237A negative feedback loop involving small RNAs accelerates Vibrio cholerae's transition out of quorum-sensing mode.
Q90173081A novel mode of DnaA-DnaA interaction promotes ADP dissociation for reactivation of replication initiation activity
Q27676494A novel nucleoid-associated protein specific to the actinobacteria
Q50999746A simple but effective modeling strategy for structural properties of non-heme Fe(II) sites in proteins: test of force field models and application to proteins in the AlkB family.
Q35662136A structural basis for allosteric control of DNA recombination by lambda integrase.
Q34469467Aberrant community architecture and attenuated persistence of uropathogenic Escherichia coli in the absence of individual IHF subunits
Q33547471Abundant oligonucleotides common to most bacteria
Q28553096Adaptive Remodeling of the Bacterial Proteome by Specific Ribosomal Modification Regulates Pseudomonas Infection and Niche Colonisation
Q92509787Analysis of HrpG regulons and HrpG-interacting proteins by ChIP-seq and affinity proteomics in Xanthomonas campestris
Q37893526Application of the bacteriophage Mu-driven system for the integration/amplification of target genes in the chromosomes of engineered Gram-negative bacteria--mini review
Q34766893Applications of synchrotron-based spectroscopic techniques in studying nucleic acids and nucleic acid-functionalized nanomaterials
Q36290829Applying 6-methylisoxanthopterin-enhanced fluorescence to examine protein-DNA interactions in the picomolar range
Q27650461Architecture of a Serine Recombinase-DNA Regulatory Complex
Q41146102Asymmetric positioning of Cas1-2 complex and Integration Host Factor induced DNA bending guide the unidirectional homing of protospacer in CRISPR-Cas type I-E system
Q34951819Atomic force microscopy analysis of the role of major DNA-binding proteins in organization of the nucleoid in Escherichia coli
Q37688895Bacterial nucleoid-associated proteins, nucleoid structure and gene expression
Q42942784Bacterial protein HU dictates the morphology of DNA condensates produced by crowding agents and polyamines
Q36499774Bacterial stationary-state mutagenesis and Mammalian tumorigenesis as stress-induced cellular adaptations and the role of epigenetics
Q36019021Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA.
Q35539879Binding then bending: a mechanism for wrapping DNA.
Q64448262Biofilm Biology and Vaccine Strategies for Otitis Media Due to Nontypeable Haemophilus influenzae
Q28085056Biofilm Matrix Proteins
Q46927233Biofilms can be dispersed by focusing the immune system on a common family of bacterial nucleoid-associated proteins
Q34091700Biophysical characterization of DNA binding from single molecule force measurements
Q34295716Chromosome Replication in Escherichia coli: Life on the Scales.
Q91452344Chromosome organization in bacteria: mechanistic insights into genome structure and function
Q41431667Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae
Q46048318Comparison of histone-like HU protein DNA-binding properties and HU/IHF protein sequence alignment
Q36668702Crenarchaeal chromatin proteins Cren7 and Sul7 compact DNA by inducing rigid bends.
Q36771604Crystal structure of histone-like protein from Streptococcus mutans refined to 1.9 Å resolution.
Q41955635DNA binding mode transitions of Escherichia coli HU(alphabeta): evidence for formation of a bent DNA--protein complex on intact, linear duplex DNA.
Q37389789DNA bridging and antibridging: a role for bacterial nucleoid-associated proteins in regulating the expression of laterally acquired genes
Q38012106DNA information: from digital code to analogue structure
Q24655337DNA organization by the apicoplast-targeted bacterial histone-like protein of Plasmodium falciparum
Q27021341DNA thermodynamics shape chromosome organization and topology
Q40062315DNA-Binding Properties of African Swine Fever Virus pA104R, a Histone-Like Protein Involved in Viral Replication and Transcription.
Q54377191Deletion of the histone-like protein (Hlp) from Mycobacterium smegmatis results in increased sensitivity to UV exposure, freezing and isoniazid
Q54335558Desulfovibrio vulgaris bacterioferritin uses H(2)O(2) as a co-substrate for iron oxidation and reveals DPS-like DNA protection and binding activities.
Q36626066Detection of the Wolbachia-encoded DNA binding protein, HU beta, in mosquito gonads
Q37263525Determining protein-induced DNA bending in force-extension experiments: theoretical analysis
Q33264512Direct observation of DNA bending/unbending kinetics in complex with DNA-bending protein IHF.
Q34725124Disruption and formation of surface salt bridges are coupled to DNA binding by the integration host factor: a computational analysis
Q42620733Distribution of genes encoding nucleoid-associated protein homologs in plasmids
Q35626033Diversity and evolution of chromatin proteins encoded by DNA viruses
Q64264203Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology
Q30583666DnaA binding locus datA promotes DnaA-ATP hydrolysis to enable cell cycle-coordinated replication initiation
Q35891566Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli
Q43131308Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte Carlo simulations
Q91866642Endogenous and Foreign Nucleoid-Associated Proteins of Bacteria: Occurrence, Interactions and Effects on Mobile Genetic Elements and Host's Biology
Q35694949Energy-independent helicase activity of a viral genome packaging motor
Q43145815Enhancement of DNA flexibility in vitro and in vivo by HMGB box A proteins carrying box B residues
Q61449803Enteropathogens: Tuning Their Gene Expression for Hassle-Free Survival
Q54426328Escherichia coli Dps interacts with DnaA protein to impede initiation: a model of adaptive mutation.
Q40696533Escherichia coli HU protein has a role in the repair of abasic sites in DNA.
Q40640925Eukaryotic HMGB proteins as replacements for HU in E. coli repression loop formation
Q64226610Evidence for a bind-then-bend mechanism for architectural DNA binding protein yNhp6A
Q28298692Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
Q87926216Force-extension behavior of DNA in the presence of DNA-bending nucleoid associated proteins
Q24633507GacA-controlled activation of promoters for small RNA genes in Pseudomonas fluorescens
Q24814573Genomes are covered with ubiquitous 11 bp periodic patterns, the "class A flexible patterns".
Q35007093Global analysis of ion dependence unveils hidden steps in DNA binding and bending by integration host factor
Q33654823Global gene expression analysis of long-term stationary phase effects in E. coli K12 MG1655
Q36493885HU binding to a DNA four-way junction probed by Förster resonance energy transfer
Q41832888HU binds and folds single-stranded DNA.
Q27333092HU multimerization shift controls nucleoid compaction
Q55122227HU of Streptococcus pneumoniae Is Essential for the Preservation of DNA Supercoiling.
Q34309335HU protein affects transcription of surface polysaccharide synthesis genes in Porphyromonas gingivalis
Q47226636High free-energy barrier of 1D diffusion along DNA by architectural DNA-binding proteins
Q35740303High-resolution mapping of architectural DNA binding protein facilitation of a DNA repression loop in Escherichia coli
Q90527752Hydration differences between the major and minor grooves of DNA revealed from heat capacity measurements
Q54273780IHF is a trans-acting factor implicated in the regulation of the proU P2 promoter.
Q41766474IHF is required for the transcriptional regulation of the Desulfovibrio vulgaris Hildenborough orp operons.
Q37259034IHF-binding sites inhibit DNA loop formation and transcription initiation
Q53585292IHF-dependent activation of P1 plasmid origin by dnaA.
Q54342446Identification and reconstitution of genetic regulatory networks for improved microbial tolerance to isooctane.
Q54182494Identification of a cis-acting element in nitrogen fixation genes recognized by CnfR in the nonheterocystous nitrogen-fixing cyanobacterium Leptolyngbya boryana.
Q90300895Identification of essential biofilm proteins in middle ear fluids of otitis media with effusion patients
Q91969425Immunization with a Biofilm-Disrupting Nontypeable Haemophilus influenzae Vaccine Antigen Did Not Alter the Gut Microbiome in Chinchillas, Unlike Oral Delivery of a Broad-Spectrum Antibiotic Commonly Used for Otitis Media
Q40347104In the NadR regulon, adhesins and diverse meningococcal functions are regulated in response to signals in human saliva
Q30506460Insights into the gene expression profile of uncultivable hemotrophic Mycoplasma suis during acute infection, obtained using proteome analysis
Q41866334Insights into the ropy phenotype of the exopolysaccharide-producing strain Bifidobacterium animalis subsp. lactis A1dOxR.
Q33890020Integration Host Factor (IHF) binds to the promoter region of the phtD operon involved in phaseolotoxin synthesis in P. syringae pv. phaseolicola NPS3121.
Q34680246Integration host factor assembly at the cohesive end site of the bacteriophage lambda genome: implications for viral DNA packaging and bacterial gene regulation
Q36064894Integration of AI-2 Based Cell-Cell Signaling with Metabolic Cues in Escherichia coli.
Q33269620Integration of regulatory signals through involvement of multiple global regulators: control of the Escherichia coli gltBDF operon by Lrp, IHF, Crp, and ArgR.
Q42854097Interactions between the RepB initiator protein of plasmid pMV158 and two distant DNA regions within the origin of replication.
Q34606883Interplay of protein and DNA structure revealed in simulations of the lac operon
Q33712829Laser capture microdissection and metagenomic analysis of intact mucosa-associated microbial communities of human colon
Q28487199Lsr2 of Mycobacterium tuberculosis is a DNA-bridging protein
Q35220676Lysine decarboxylase expression by Vibrio vulnificus is induced by SoxR in response to superoxide stress.
Q36007346Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis
Q37590028Mechanisms and evolution of control logic in prokaryotic transcriptional regulation.
Q35099697Model of a DNA-protein complex of the architectural monomeric protein MC1 from Euryarchaea
Q34189303Modulation of HU-DNA interactions by salt concentration and applied force
Q36069653Molecular beacon-equilibrium cyclization detection of DNA-protein complexes
Q41660778Molecular characterization of plasmid pMoma1of Moraxella macacae, a newly described bacterial pathogen of macaques
Q34634329Molecular dissection of Mycobacterium tuberculosis integration host factor reveals novel insights into the mode of DNA binding and nucleoid compaction
Q37221382Monoclonal antibodies against DNA-binding tips of DNABII proteins disrupt biofilms in vitro and induce bacterial clearance in vivo
Q60364193Mycobacterial nucleoid associated proteins: An added dimension in gene regulation
Q52669478Natural antigenic differences in the functionally equivalent extracellular DNABII proteins of bacterial biofilms provide a means for targeted biofilm therapeutics.
Q42758407Nonspecific DNA binding and bending by HUαβ: interfaces of the three binding modes characterized by salt-dependent thermodynamics
Q41433550Nontypeable Haemophilus influenzae releases DNA and DNABII proteins via a T4SS-like complex and ComE of the type IV pilus machinery
Q33878941Novel clades of the HU/IHF superfamily point to unexpected roles in the eukaryotic centrosome, chromosome partitioning, and biologic conflicts
Q64263275Nucleoid-Associated Protein HU: A Lilliputian in Gene Regulation of Bacterial Virulence
Q35774615Origins of specificity in protein-DNA recognition.
Q30383951OxyR-dependent formation of DNA methylation patterns in OpvABOFF and OpvABON cell lineages of Salmonella enterica.
Q33738040ParB spreading requires DNA bridging.
Q46343998Phage Mu-driven two-plasmid system for integration of recombinant DNA in the Methylophilus methylotrophus genome
Q40226805Physical and Functional Characterization of a Viral Genome Maturation Complex
Q33667421Platform for in situ real-time measurement of protein-induced conformational changes of DNA.
Q55399825Posttranslational modification of a histone-like protein regulates phenotypic resistance to isoniazid in mycobacteria.
Q42410867Probing a label-free local bend in DNA by single molecule tethered particle motion
Q33693009Protein binding has a large effect on radical mediated DNA damage
Q37391265Protein occupancy landscape of a bacterial genome
Q30438265Reciprocal expression of integration host factor and HU in the developmental cycle and infectivity of Legionella pneumophila
Q90839087Redirecting the immune response towards immunoprotective domains of a DNABII protein resolves experimental otitis media
Q53341848Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.
Q46282732Regulatory dynamics in the ternary DnaA complex for initiation of chromosomal replication in Escherichia coli.
Q41343446Replication Initiation in Bacteria
Q34106460Repression of aerobic leukotoxin transcription by integration host factor in Aggregatibacter actinomycetemcomitans
Q36597246Resolving chromosome segregation in bacteria
Q42999182Search by proteins for their DNA target site: 2. The effect of DNA conformation on the dynamics of multidomain proteins
Q38536135Serine Resolvases
Q27643636Shaping the Borrelia burgdorferi genome: crystal structure and binding properties of the DNA-bending protein Hbb
Q41767759Sigma factor RpoN (σ54) regulates pilE transcription in commensal Neisseria elongata.
Q30494866Single-molecule approaches to probe the structure, kinetics, and thermodynamics of nucleoprotein complexes that regulate transcription
Q54340706Single-walled carbon nanotubes as scaffolds to concentrate DNA for the study of DNA-protein interactions.
Q41363026Site-specific recombination in the cyanobacterium Anabaena sp. strain PCC 7120 catalyzed by the integrase of coliphage HK022.
Q45147882Soluble expression of proteins correlates with a lack of positively-charged surface
Q35130332Spontaneous sharp bending of DNA: role of melting bubbles
Q35157427Stepwise binding and bending of DNA by Escherichia coli integration host factor
Q41460150Structural analysis of DNA binding by C.Csp231I, a member of a novel class of R-M controller proteins regulating gene expression.
Q51299285Structural and evolutionary analyses reveal determinants of DNA binding specificities of nucleoid-associated proteins HU and IHF.
Q37974625Structural and molecular genetic analyses of the bacterial carbazole degradation system.
Q47250216Structural plasticity and thermal stability of the histone-like protein from Spiroplasma melliferum are due to phenylalanine insertions into the conservative scaffold.
Q31121428Structural stability of Burkholderia cenocepacia biofilms is reliant on eDNA structure and presence of a bacterial nucleic acid binding protein
Q37044560Structure and mechanism for DNA lesion recognition
Q35933834Structure-based analysis of HU-DNA binding
Q54356451Synergy between the N-terminal and C-terminal domains of Mycobacterium tuberculosis HupB is essential for high-affinity binding, DNA supercoiling and inhibition of RecA-promoted strand exchange.
Q36639773Targeting bacterial integration host factor to disrupt biofilms associated with cystic fibrosis
Q50043644Targeting the HUβ protein prevents Porphyromonas gingivalis from entering into pre-existing biofilms
Q28469469The Arginine Pairs and C-Termini of the Sso7c4 from Sulfolobus solfataricus Participate in Binding and Bending DNA
Q35214795The Bacteroides thetaiotaomicron protein Bacteroides host factor A participates in integration of the integrative conjugative element CTnDOT into the chromosome
Q45286072The CarD/CarG regulatory complex is required for the action of several members of the large set of Myxococcus xanthus extracytoplasmic function σ factors
Q27664630The Crystal Structure of Non-Modified and Bipyridine-Modified PNA Duplexes
Q47303593The DNABII family of proteins is comprised of the only nucleoid associated proteins required for nontypeable Haemophilus influenzae biofilm structure
Q47194255The DnaA Cycle in Escherichia coli: Activation, Function and Inactivation of the Initiator Protein.
Q58286818The Major Architects of Chromatin: Architectural Proteins in Bacteria, Archaea and Eukaryotes
Q27675022The Mu transpososome structure sheds light on DDE recombinase evolution
Q47899804The Plasmodium HU homolog, which binds the plastid DNA sequence-independent manner, is essential for the parasite's survival
Q54424046The essentiality and involvement of Streptococcus intermedius histone-like DNA-binding protein in bacterial viability and normal growth.
Q21263054The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens
Q48186854The histone-like protein HU has a role in gene expression during the acid adaptation response in Helicobacter pylori.
Q37006498The nucleoid-associated protein HUβ affects global gene expression in Porphyromonas gingivalis
Q22065692The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin
Q33809409The transposon-like Correia elements encode numerous strong promoters and provide a potential new mechanism for phase variation in the meningococcus.
Q38536129The λ Integrase Site-specific Recombination Pathway
Q93006081Theoretical Methods for Studying DNA Structural Transitions under Applied Mechanical Constraints
Q37197810Time-dependent bending rigidity and helical twist of DNA by rearrangement of bound HU protein
Q27317151Transcription-factor-mediated DNA looping probed by high-resolution, single-molecule imaging in live E. coli cells
Q41831747Transcriptional control by two interacting regulatory proteins: identification of the PtxS binding site at PtxR.
Q33519510Transcriptome and proteome exploration to model translation efficiency and protein stability in Lactococcus lactis
Q38851718Transcutaneous Immunization with a Band-Aid Prevents Experimental Otitis Media in a Polymicrobial Model
Q56672978Transfer-matrix calculations of the effects of tension and torque constraints on DNA-protein interactions
Q42845280Transposon mutagenesis identifies sites upstream of the Neisseria gonorrhoeae pilE gene that modulate pilin antigenic variation
Q53583298Tryptophanase in sRNA control of the Escherichia coli cell cycle.
Q47264926Two-step interrogation then recognition of DNA binding site by Integration Host Factor: an architectural DNA-bending protein
Q54281110UV radiation effects on a DNA repair enzyme: conversion of a [4Fe-4S](2+) cluster into a [2Fe-2S] (2+).
Q42119294Understanding apparent DNA flexibility enhancement by HU and HMGB architectural proteins
Q41774790Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions
Q42199842Variation of the intercalating proline in artificial peptides mimicking the DNA binding and bending IHF protein
Q40226903Various mutations compensate for a deleterious lacZα insert in the replication enhancer of M13 bacteriophage
Q26781380Yersinia pestis and Yersinia pseudotuberculosis infection: a regulatory RNA perspective
Q34459103oriC-encoded instructions for the initiation of bacterial chromosome replication.

Search more.