Protein- and ATP-dependent transitions from 'closed' to 'open' complexes at the ori of plasmid R6K

scientific article published on October 15, 2003

Protein- and ATP-dependent transitions from 'closed' to 'open' complexes at the ori of plasmid R6K is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/NAR/GKG809
P953full work available at URLhttps://academic.oup.com/nar/article-pdf/31/20/5993/6258300/gkg809.pdf
https://europepmc.org/articles/PMC219486
https://europepmc.org/articles/PMC219486?pdf=render
https://doi.org/10.1093/nar/gkg809
http://academic.oup.com/nar/article-pdf/31/20/5993/6258300/gkg809.pdf
P932PMC publication ID219486
P698PubMed publication ID14530447
P5875ResearchGate publication ID242825463

P50authorRicardo H KrügerQ92129612
P2093author name stringMarcin Filutowicz
P2860cites workDNA phase transition promoted by replication initiatorQ64388449
Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vectorQ69314090
Studies of nucleotide binding to the ribonucleic acid polymerase by a fluorescence techniqueQ69891469
Conformational changes in a replication origin induced by an initiator proteinQ70117842
Buffer composition mediates a switch between cooperative and independent binding of an initiator protein to DNAQ71817970
Interaction of the plasmid R6K-encoded replication initiator protein with its binding sites on DNAQ72791834
A conformational switch between transcriptional repression and replication initiation in the RepA dimerization domainQ73436980
Assemblies of replication initiator protein on symmetric and asymmetric DNA sequences depend on multiple protein oligomerization surfacesQ77450506
Regulatory implications of protein assemblies at the gamma origin of plasmid R6K - a reviewQ77702899
Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding foldQ24556499
Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 Å resolutionQ27619547
Remodeling of replication initiator proteinsQ27641509
Characterization of His-tagged, R6K-encoded pi protein variants.Q30333086
Two forms of replication initiator protein: positive and negative controlsQ33738940
Mechanistic studies of initiator-initiator interaction and replication initiationQ33889438
Trans-complementation-dependent replication of a low molecular weight origin fragment from plasmid R6KQ34283824
Binding of DnaA protein to a replication enhancer counteracts the inhibition of plasmid R6K gamma origin replication mediated by elevated levels of R6K pi proteinQ35980157
Localized melting and structural changes in the SV40 origin of replication induced by T-antigen.Q35989217
Nucleotide sequence of the region of an origin of replication of the antibiotic resistance plasmid R6KQ37319954
Positive and negative roles of an initiator protein at an origin of replicationQ37412117
Copy-up mutants of the plasmid RK2 replication initiation protein are defective in coupling RK2 replication originsQ37661651
A nucleotide switch in the Escherichia coli DnaA protein initiates chromosomal replication: evidnece from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivoQ38292172
Monomer/dimer ratios of replication protein modulate the DNA strand-opening in a replication originQ38303508
Replication of R6K gamma origin in vitro: discrete start sites for DNA synthesis dependent on pi and its copy-up variantsQ38333175
The central lysine in the P-loop motif of the Escherichia coli DnaA protein is essential for initiating DNA replication from the chromosomal origin, oriC, and the F factor origin, oriS, but is dispensable for initiation from the P1 plasmid origin, oQ38333438
Requirements for and regulation of origin opening of plasmid P1.Q38333505
ATP AnalogsQ39066212
Integration host factor of Escherichia coli reverses the inhibition of R6K plasmid replication by pi initiator proteinQ39939090
The nucleotide sequence of the uvrD gene of E. coliQ40461139
Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexesQ40556347
Regulation of replication of an iteron-containing DNA moleculeQ40639080
Replication cycle-coordinated change of the adenine nucleotide-bound forms of DnaA protein in Escherichia coliQ42085318
Negative control of DNA replication by hydrolysis of ATP bound to DnaA protein, the initiator of chromosomal DNA replication in Escherichia coliQ42120466
Role of TrfA and DnaA proteins in origin opening during initiation of DNA replication of the broad host range plasmid RK2.Q42661197
Effect of Mg2+ on kinetics of oxidation of pyrimidines in duplex DNA by potassium permanganateQ42664894
Mg2+ ions do not induce expansion of the melted DNA region in the open complex formed by Escherichia coli RNA polymerase at a cognate synthetic Pa promoter. A quantitative KMnO4 footprinting study.Q43815098
The localized melting of mini-F origin by the combined action of the mini-F initiator protein (RepE) and HU and DnaA of Escherichia coliQ44029616
Duplex opening by dnaA protein at novel sequences in initiation of replication at the origin of the E. coli chromosomeQ44347022
ATP activates dnaA protein in initiating replication of plasmids bearing the origin of the E. coli chromosomeQ44623972
The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase.Q47802858
Binding of purified wild-type and mutant pi initiation proteins to a replication origin region of plasmid R6K.Q54433896
Replication of the R6K gamma origin in vitro: dependence on wt pi and hyperactive piS87N protein variant.Q54563017
ATP-dependent assembly of double hexamers of SV40 T antigen at the viral origin of DNA replicationQ59098660
P4510describes a project that usesImageQuantQ112270642
P433issue20
P407language of work or nameEnglishQ1860
P921main subjectgeneticsQ7162
P304page(s)5993-6003
P577publication date2003-10-01
2003-10-15
P1433published inNucleic Acids ResearchQ135122
P1476titlepi protein- and ATP-dependent transitions from 'closed' to 'open' complexes at the gamma ori of plasmid R6K
Protein- and ATP-dependent transitions from 'closed' to 'open' complexes at the ori of plasmid R6K
P478volume31

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cites work (P2860)
Q34233413AT-rich region and repeated sequences - the essential elements of replication origins of bacterial replicons.
Q28067371Opening the Strands of Replication Origins-Still an Open Question
Q36950808Plasmid R6K replication control

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