Structural basis of human PCNA sliding on DNA.

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Structural basis of human PCNA sliding on DNA. is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2017NatCo...813935D
P6179Dimensions Publication ID1014221288
P356DOI10.1038/NCOMMS13935
P8608Fatcat IDrelease_2nmlqxhtmbeptlhi6fzwp5zpii
P932PMC publication ID5234079
P698PubMed publication ID28071730

P50authorFrancisco J. BlancoQ16251242
Ramon CrehuetQ41050483
Nekane MerinoQ41447329
Silvia OnestiQ44473575
Matteo De MarchQ57503038
Susana Barrera-VilarmauQ59699675
Alfredo De BiasioQ61125066
P2860cites workCrystal structure analysis of a complete turn of B-DNAQ22122416
Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypassQ24299250
Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyclosome substrateQ24305097
Functional roles of p12, the fourth subunit of human DNA polymerase deltaQ24306171
Proliferating cell nuclear antigen structure and interactions: too many partners for one dancer?Q38116107
Secondary Interaction Interfaces with PCNA Control Conformational Switching of DNA Polymerase PolB from Polymerization to Editing.Q39826342
Direct interaction of proliferating cell nuclear antigen with the p125 catalytic subunit of mammalian DNA polymerase deltaQ42058088
On the application of structure-specific bulk-solvent modelsQ44198146
Purification and characterization of the catalytic subunit of human DNA polymerase delta expressed in baculovirus-infected insect cells.Q52551598
The human homologue of fission Yeast cdc27, p66, is a component of active human DNA polymerase deltaQ73819410
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputersQ104439794
THESEUS: maximum likelihood superpositioning and analysis of macromolecular structuresQ24656525
Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase IIIQ27634553
Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clampQ27642098
Structure of a Sliding Clamp on DNAQ27649528
The Mechanism of ATP-Dependent Primer-Template Recognition by a Clamp Loader ComplexQ27655502
Analysis of the role of PCNA-DNA contacts during clamp loadingQ27659293
How a DNA Polymerase Clamp Loader Opens a Sliding ClampQ27676381
Structure of p15(PAF)-PCNA complex and implications for clamp sliding during DNA replication and repairQ27698433
Crystal structure of the eukaryotic DNA polymerase processivity factor PCNAQ27730804
XDSQ27860472
3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structuresQ27860547
Integration, scaling, space-group assignment and post-refinementQ27860550
REFMAC5 for the refinement of macromolecular crystal structuresQ27860905
Features and development of CootQ27861079
The CCP4 suite: programs for protein crystallographyQ27861090
Mediation of proliferating cell nuclear antigen (PCNA)-dependent DNA replication through a conserved p21(Cip1)-like PCNA-binding motif present in the third subunit of human DNA polymerase deltaQ28191516
Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complexQ28267285
Structure-function relationship of the eukaryotic DNA replication factor, proliferating cell nuclear antigenQ28297396
Reduced stability and increased dynamics in the human proliferating cell nuclear antigen (PCNA) relative to the yeast homologQ28477198
Proliferating cell nuclear antigen (PCNA) interactions in solution studied by NMRQ28484905
A conserved region in the amino terminus of DNA polymerase delta is involved in proliferating cell nuclear antigen bindingQ28610350
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkitQ29615867
Motion of a DNA sliding clamp observed by single molecule fluorescence spectroscopyQ33343944
Impact of individual proliferating cell nuclear antigen-DNA contacts on clamp loading and function on DNA.Q34383645
Architecture of the DNA polymerase B-proliferating cell nuclear antigen (PCNA)-DNA ternary complexQ34550038
Proliferating cell nuclear antigen loaded onto double-stranded DNA: dynamics, minor groove interactions and functional implications.Q35128132
do_x3dna: a tool to analyze structural fluctuations of dsDNA or dsRNA from molecular dynamics simulationsQ35594699
PDB_REDO: constructive validation, more than just looking for errorsQ35878830
Parmbsc1: a refined force field for DNA simulationsQ36428161
Okazaki fragment metabolismQ36555193
Stepwise assembly of the human replicative polymerase holoenzyme.Q36733760
Stability of the human polymerase δ holoenzyme and its implications in lagging strand DNA synthesis.Q36770665
Mechanism of replication machinery assembly as revealed by the DNA ligase-PCNA-DNA complex architectureQ37140150
Proliferating cell nuclear antigen uses two distinct modes to move along DNA.Q37285283
P407language of work or nameEnglishQ1860
P304page(s)13935
P577publication date2017-01-10
P1433published inNature CommunicationsQ573880
P1476titleStructural basis of human PCNA sliding on DNA.
P478volume8

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cites work (P2860)
Q92154522Assembly of a G-Quadruplex Repair Complex by the FANCJ DNA Helicase and the REV1 Polymerase
Q64114352Binding of the regulatory domain of MutL to the sliding β-clamp is species specific
Q57784307Coordinating Multi-Protein Mismatch Repair by Managing Diffusion Mechanics on the DNA
Q52320296Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus.
Q49775052DNA Replication: How Does a Sliding Clamp Slide?
Q57753687Diffusion of ring-shaped proteins along DNA: case study of sliding clamps
Q100454906Does PCNA diffusion on DNA follow a rotation-coupled translation mechanism?
Q92203157Effective mismatch repair depends on timely control of PCNA retention on DNA by the Elg1 complex
Q58087149Facilitated Diffusion Mechanisms in DNA Base Excision Repair and Transcriptional Activation
Q47953015Linchpin DNA-binding residues serve as go/no-go controls in the replication factor C-catalyzed clamp-loading mechanism.
Q58768271Maneuvers on PCNA Rings during DNA Replication and Repair
Q90044441Modulation of Toroidal Proteins Dynamics in Favor of Functional Mechanisms upon Ligand Binding
Q100454924Reply to: "Does PCNA diffusion on DNA follow a rotation-coupled translation mechanism?"
Q90713449Structural basis for the increased processivity of D-family DNA polymerases in complex with PCNA
Q49837111Structural basis for the molecular interactions in DNA damage tolerances.
Q89947536Structure of the processive human Pol δ holoenzyme
Q47945102The dark side of the ring: role of the DNA sliding surface of PCNA.
Q58794746p15PAF binding to PCNA modulates the DNA sliding surface

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