Methods for collapsing multiple rare variants in whole-genome sequence data

scientific article

Methods for collapsing multiple rare variants in whole-genome sequence data is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/GEPI.21820
P932PMC publication ID4558905
P698PubMed publication ID25112183

P50authorMichael D. SwartzQ54696371
Keegan D KorthauerQ63436837
P2093author name stringCorinne D Engelman
Yun Ju Sung
P2860cites workAn integrated encyclopedia of DNA elements in the human genomeQ22122150
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Higher criticism approach to detect rare variants using whole genome sequencing dataQ30879621
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The probability distribution of the amount of an individual's genome surviving to the following generationQ33967626
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Small sample properties of rare variant analysis methodsQ34085632
A comparison of two collapsing methods in different approachesQ34085777
Considering interactive effects in the identification of influential regions with extremely rare variants via fixed bin approachQ34085933
Multiple rare variants in NPC1L1 associated with reduced sterol absorption and plasma low-density lipoprotein levelsQ34478587
Association studies for next-generation sequencingQ35085282
Statistical analysis of rare sequence variants: an overview of collapsing methodsQ35752081
A novel approach of homozygous haplotype sharing identifies candidate genes in autism spectrum disorderQ35828248
Optimal unified approach for rare-variant association testing with application to small-sample case-control whole-exome sequencing studiesQ36152947
Runs of homozygosity reveal highly penetrant recessive loci in schizophrenia.Q36288960
Genome-wide association studies: potential next steps on a genetic journeyQ37292893
Statistical analysis strategies for association studies involving rare variantsQ37799723
Rare Variant Association Analysis Methods for Complex TraitsQ37806780
Comparison of statistical tests for disease association with rare variantsQ38769458
LOHAS: loss-of-heterozygosity analysis suiteQ39612693
An evaluation of statistical approaches to rare variant analysis in genetic association studiesQ39941009
Homozygosity haplotype allows a genomewide search for the autosomal segments shared among patients.Q42035306
A strategy to discover genes that carry multi-allelic or mono-allelic risk for common diseases: a cohort allelic sums test (CAST).Q51928874
Higher criticism for detecting sparse heterogeneous mixturesQ56622268
Robust and powerful tests for rare variants using Fisher's method to combine evidence of association from two or more complementary testsQ87405700
Functional Data AnalysisQ104210248
P921main subjectwhole genome sequencingQ2068526
P304page(s)S13-20
P577publication date2014-09-01
P1433published inGenetic EpidemiologyQ5532864
P1476titleMethods for collapsing multiple rare variants in whole-genome sequence data
P478volume38 Suppl 1

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cites work (P2860)
Q31121956A W-test collapsing method for rare-variant association testing in exome sequencing data.
Q39146309Drinking from the Holy Grail: analysis of whole-genome sequencing from the Genetic Analysis Workshop 18.
Q47437547Family-based tests for associating haplotypes with general phenotype data: Improving the FBAT-haplotype algorithm
Q89186177FastSKAT: Sequence kernel association tests for very large sets of markers
Q64999783Influence of genetic factors on long-term treatment related neurocognitive complications, and on anxiety and depression in survivors of childhood acute lymphoblastic leukemia: The Petale study.
Q62478112Investigation of novel variations of ORAI1 gene and their association with Kawasaki disease
Q33677747Longitudinal data analysis for rare variants detection with penalized quadratic inference function
Q35008595Summary of results and discussions from the gene-based tests group at Genetic Analysis Workshop 18.
Q26750946The Increasing Importance of Gene-Based Analyses

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