An evaluation of statistical approaches to rare variant analysis in genetic association studies

scientific article published on February 2010

An evaluation of statistical approaches to rare variant analysis in genetic association studies is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/GEPI.20450
P932PMC publication ID2962811
P698PubMed publication ID19810025
P5875ResearchGate publication ID26876940

P50authorEleftheria ZegginiQ21258788
Andrew P MorrisQ85050906
P2860cites workGenome-wide association defines more than 30 distinct susceptibility loci for Crohn's diseaseQ22251069
Multiple Rare Alleles Contribute to Low Plasma Levels of HDL CholesterolQ22337068
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controlsQ24550675
Variants in MTNR1B influence fasting glucose levelsQ24642630
Six new loci associated with body mass index highlight a neuronal influence on body weight regulationQ24646434
Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk lociQ24658255
A haplotype map of the human genomeQ24679827
Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetesQ29417138
Generating samples under a Wright-Fisher neutral model of genetic variationQ29547168
Maximum-likelihood estimation of molecular haplotype frequencies in a diploid populationQ29614401
Loci influencing lipid levels and coronary heart disease risk in 16 European population cohortsQ29614946
An evaluation of HapMap sample size and tagging SNP performance in large-scale empirical and simulated data setsQ31014617
Methods for detecting associations with rare variants for common diseases: application to analysis of sequence dataQ33359015
Evaluating the effects of imputation on the power, coverage, and cost efficiency of genome-wide SNP platformsQ36744653
Common variants at CD40 and other loci confer risk of rheumatoid arthritisQ37376871
On the advantage of haplotype analysis in the presence of multiple disease susceptibility allelesQ48617768
Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals.Q52039628
P433issue2
P921main subjectstatisticsQ12483
P304page(s)188-193
P577publication date2010-02-01
P1433published inGenetic EpidemiologyQ5532864
P1476titleAn evaluation of statistical approaches to rare variant analysis in genetic association studies
P478volume34

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cites work (P2860)
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Q34255847SEQCHIP: a powerful method to integrate sequence and genotype data for the detection of rare variant associations
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Q37076975Selection and explosive growth alter genetic architecture and hamper the detection of causal rare variants
Q89581647Sequence Analysis of Drug Target Genes with Suicidal Behavior in Bipolar Disorder Patients
Q35982039Sequence Kernel Association Analysis of Rare Variant Set Based on the Marginal Regression Model for Binary Traits
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Q36812083Sequence kernel association test for quantitative traits in family samples
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Q36148111Set-based tests for genetic association in longitudinal studies
Q36161327Simultaneous Analysis of Common and Rare Variants in Complex Traits: Application to SNPs (SCARVAsnp)
Q47661071Single Marker Family-Based Association Analysis Conditional on Parental Information
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Q37856462Statistical analysis of genetic interactions
Q35752081Statistical analysis of rare sequence variants: an overview of collapsing methods
Q37799723Statistical analysis strategies for association studies involving rare variants
Q34163502Statistical guidance for experimental design and data analysis of mutation detection in rare monogenic mendelian diseases by exome sequencing
Q28081028Strategies for Imputing and Analyzing Rare Variants in Association Studies
Q35542036Study designs for identification of rare disease variants in complex diseases: the utility of family-based designs
Q37784094Synthetic associations in the context of genome-wide association scan signals
Q33858791Targeted resequencing and systematic in vivo functional testing identifies rare variants in MEIS1 as significant contributors to restless legs syndrome
Q36522128Test for rare variants by environment interactions in sequencing association studies
Q51415298Testing cross-phenotype effects of rare variants in longitudinal studies of complex traits.
Q30645712Testing for rare variant associations in the presence of missing data
Q30841941Testing genetic association with rare and common variants in family data
Q37820686The effect of next-generation sequencing technology on complex trait research
Q40998328The effect of phenotypic outliers and non-normality on rare-variant association testing
Q38006632The emerging spectrum of allelic variation in schizophrenia: current evidence and strategies for the identification and functional characterization of common and rare variants
Q34154481The empirical power of rare variant association methods: results from sanger sequencing in 1,998 individuals
Q37667627The future of genomics for developmentalists
Q52145849The genetic associations of acute anterior uveitis and their overlap with the genetics of ankylosing spondylitis.
Q60046260The impact of a fine-scale population stratification on rare variant association test results
Q33613854The impact of rare and low-frequency genetic variants in common disease
Q35676416The influence of genetics on response to treatment with ranibizumab (Lucentis) for age-related macular degeneration: the Lucentis Genotype Study (an American Ophthalmological Society thesis).
Q33354240The next generation of complex lung genetic studies
Q38137080The role and challenges of exome sequencing in studies of human diseases
Q30909399The role of rare variants in systolic blood pressure: analysis of ExomeChip data in HyperGEN African Americans
Q42369086To Identify Associations with Rare Variants, Just WHaIT: Weighted Haplotype and Imputation-Based Tests
Q33960019Two non-synonymous markers in PTPN21, identified by genome-wide association study data-mining and replication, are associated with schizophrenia
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Q30879612Whole genome sequence analysis of the simulated systolic blood pressure in Genetic Analysis Workshop 18 family data: long-term average and collapsing methods
Q45812682Whole genome sequencing of extreme phenotypes identifies variants in CD101 and UBE2V1 associated with increased risk of sexually acquired HIV-1.
Q34497678Whole-genome sequencing of the world's oldest people