Assessing the impact of non-differential genotyping errors on rare variant tests of association

scientific article published on 15 October 2011

Assessing the impact of non-differential genotyping errors on rare variant tests of association is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1159/000332222
P932PMC publication ID3214826
P698PubMed publication ID22004945
P5875ResearchGate publication ID51721169

P50authorShyam GopalakrishnanQ57452175
P2093author name stringScott Powers
Nathan Tintle
P2860cites workDirect measure of the de novo mutation rate in autism and schizophrenia cohortsQ24618002
Mapping short DNA sequencing reads and calling variants using mapping quality scoresQ24644612
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Incorporating duplicate genotype data into linear trend tests of genetic association: methods and cost-effectivenessQ33459421
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Rare-variant association testing for sequencing data with the sequence kernel association testQ33954046
Spoiling the whole bunch: quality control aimed at preserving the integrity of high-throughput genotypingQ33960459
Common vs. rare allele hypotheses for complex diseasesQ34038820
APOE is not associated with Alzheimer disease: a cautionary tale of genotype imputationQ34107821
Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypesQ34300842
A comparison of approaches to account for uncertainty in analysis of imputed genotypesQ35128434
Factors affecting statistical power in the detection of genetic associationQ36148601
Genotype-imputation accuracy across worldwide human populationsQ37156125
The relationship between imputation error and statistical power in genetic association studies in diverse populationsQ37417890
Statistical analysis strategies for association studies involving rare variantsQ37799723
Base-calling for next-generation sequencing platformsQ37829810
Effects of differential genotyping error rate on the type I error probability of case-control studiesQ38438070
An evaluation of statistical approaches to rare variant analysis in genetic association studiesQ39941009
Adaptive tests for association analysis of rare variantsQ41898785
To Identify Associations with Rare Variants, Just WHaIT: Weighted Haplotype and Imputation-Based TestsQ42369086
Confounded by sequencing depth in association studies of rare allelesQ42786144
A new expectation-maximization statistical test for case-control association studies considering rare variants obtained by high-throughput sequencingQ44850340
SNP mistyping in genotyping arrays--an important cause of spurious association in case-control studies.Q45265463
Increase of rejection rate in case-control studies with the differential genotyping error ratesQ46563573
Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphismsQ47175186
Quantifying the percent increase in minimum sample size for SNP genotyping errors in genetic model-based association studiesQ47386037
The effects of SNP genotyping errors on the power of the Cochran-Armitage linear trend test for case/control association studies.Q51929001
What SNP genotyping errors are most costly for genetic association studies?Q52004489
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectgenotypingQ912147
P304page(s)153-160
P577publication date2011-10-15
P1433published inHuman HeredityQ15755116
P1476titleAssessing the impact of non-differential genotyping errors on rare variant tests of association
P478volume72

Reverse relations

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Q37491655A POWERFUL METHOD FOR INCLUDING GENOTYPE UNCERTAINTY IN TESTS OF HARDY-WEINBERG EQUILIBRIUM.
Q37031565A geometric framework for evaluating rare variant tests of association
Q34614279Assessing the impact of differential genotyping errors on rare variant tests of association
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Q37689468Evaluating the impact of genotype errors on rare variant tests of association
Q39064453Impact of genotyping errors on statistical power of association tests in genomic analyses: A case study
Q37213420Imputation-based genomic coverage assessments of current human genotyping arrays
Q37394183Single-variant and multi-variant trend tests for genetic association with next-generation sequencing that are robust to sequencing error.
Q37027403The impact of genotype calling errors on family-based studies
Q30841937Value of Mendelian laws of segregation in families: data quality control, imputation, and beyond

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