Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms

scientific article published in January 2002

Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1159/000066696
P698PubMed publication ID12446984
P5875ResearchGate publication ID11022144

P2093author name stringDerek Gordon
Stephen J Finch
Michael Nothnagel
Jürg Ott
P433issue1
P921main subjectsingle-nucleotide polymorphismQ501128
P304page(s)22-33
P577publication date2002-01-01
P1433published inHuman HeredityQ15755116
P1476titlePower and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms
P478volume54

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cites work (P2860)
Q30334349"Are we there yet?": Deciding when one has demonstrated specific genetic causation in complex diseases and quantitative traits.
Q35050878A C17T polymorphism in the mu opiate receptor is associated with quantitative measures of drug use in African American women
Q36090843A comprehensive literature review of haplotyping software and methods for use with unrelated individuals
Q33235034A detailed Hapmap of the Sitosterolemia locus spanning 69 kb; differences between Caucasians and African-Americans
Q44850340A new expectation-maximization statistical test for case-control association studies considering rare variants obtained by high-throughput sequencing
Q81007884A single nucleotide polymorphism (A --> G) in intron 3 of IFNgamma gene is associated with asthma
Q35978582A survey of current software for genetic power calculations
Q36587679A systematic review of the quality of genetic association studies in human sepsis
Q54709158A trio family study showing association of the lymphotoxin-alpha N26 (804A) allele with coronary artery disease.
Q33900568ALG: automated genotype calling of Luminex assays
Q35839417African-derived genetic polymorphisms in TNFAIP3 mediate risk for autoimmunity
Q24680494Analysis of KLF transcription factor family gene variants in type 2 diabetes
Q34078200Approximate and exact tests of Hardy-Weinberg equilibrium using uncertain genotypes
Q33255336Are molecular haplotypes worth the time and expense? A cost-effective method for applying molecular haplotypes
Q34614279Assessing the impact of differential genotyping errors on rare variant tests of association
Q35546078Assessing the impact of non-differential genotyping errors on rare variant tests of association
Q33519737Assessing the utility of whole-genome amplified serum DNA for array-based high throughput genotyping
Q33547739Association analysis of ADPRT1, AKR1B1, RAGE, GFPT2 and PAI-1 gene polymorphisms with chronic renal insufficiency among Asian Indians with type-2 diabetes
Q54610492Association between dopamine receptor D1 A-48G polymorphism and methamphetamine abuse.
Q33281836Association of TGFbeta1, TNFalpha, CCR2 and CCR5 gene polymorphisms in type-2 diabetes and renal insufficiency among Asian Indians
Q48966036Association of a functional FAAH polymorphism with methamphetamine-induced symptoms and dependence in a Malaysian population.
Q51748901Association of a mineralocorticoid receptor gene polymorphism with hypertension in a Spanish population.
Q42927243Association of brain-derived neurotrophic factor (Val66Met) genetic polymorphism with methamphetamine dependence in a Malaysian population
Q95811798Association of dopaminergic pathway gene polymorphisms with chronic renal insufficiency among Asian Indians with type-2 diabetes
Q36408718Association of markers at chromosome 15q14 in Chinese patients with moderate to high myopia
Q45151190Association of tryptophan hydroxylase gene polymorphism with depression, anxiety and comorbid depression and anxiety in a population-based sample of postpartum Taiwanese women
Q46086323Association studies of catechol-O-methyltransferase (COMT) gene with schizophrenia and response to antipsychotic treatment.
Q34916745Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls
Q61443061Associations between SLC16A11 variants and diabetes in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL)
Q35019839Case-control association analysis of dopamine receptor polymorphisms in alcohol dependence: a pilot study in Indian males
Q38010012Challenges in reproducibility of genetic association studies: lessons learned from the obesity field
Q33232748Characteristics of replicated single-nucleotide polymorphism genotypes from COGA: Affymetrix and Center for Inherited Disease Research
Q33242098Chronic renal insufficiency among Asian Indians with type 2 diabetes: I. Role of RAAS gene polymorphisms.
Q33428547Common variants of inflammatory cytokine genes are associated with risk of nephropathy in type 2 diabetes among Asian Indians
Q53510530Comparison of identical single nucleotide polymorphisms genotyped by the GeneChip Targeted Genotyping 25K, Affymetrix 500K and Illumina 550K platforms.
Q33378466Computing power and sample size for case-control association studies with copy number polymorphism: application of mixture-based likelihood ratio test
Q36619654Computing power in case-control association studies through the use of quadratic approximations: application to meta-statistics
Q37586665DNA repair gene polymorphisms and risk of cutaneous melanoma: a systematic review and meta-analysis
Q37115887Definition of phenotype
Q33844431Detection of Mendelian consistent genotyping errors in pedigrees
Q81004885Detection of genotyping errors and pseudo-SNPs via deviations from Hardy-Weinberg equilibrium
Q33197920Detection of genotyping errors by Hardy-Weinberg equilibrium testing.
Q33392518Deviations from hardy-weinberg equilibrium in parental and unaffected sibling genotype data
Q33530569Dopamine D2 receptor polymorphisms and susceptibility to alcohol dependence in Indian males: a preliminary study
Q58132466Effect of Genotyping Error on Type-I Error Rate of Affected Sib Pair Studies with Genotyped Parents
Q38438070Effects of differential genotyping error rate on the type I error probability of case-control studies
Q63440939Endothelial nitric oxide synthase gene haplotypes and diabetic nephropathy among Asian Indians
Q24810851Estimating haplotype frequencies in pooled DNA samples when there is genotyping error
Q33369394Estimating the single nucleotide polymorphism genotype misclassification from routine double measurements in a large epidemiologic sample
Q45295046Estimation of genotype error rate using samples with pedigree information--an application on the GeneChip Mapping 10K array
Q30879655Evaluating the concordance between sequencing, imputation and microarray genotype calls in the GAW18 data.
Q37689468Evaluating the impact of genotype errors on rare variant tests of association
Q101216820Expanding the genetic architecture of nicotine dependence and its shared genetics with multiple traits
Q36148601Factors affecting statistical power in the detection of genetic association
Q28943341Family-based genome-wide association scan of attention-deficit/hyperactivity disorder
Q57405103Findings in an independent sample support an association between bipolar affective disorder and the G72/G30 locus on chromosome 13q33
Q36539672Functional single nucleotide polymorphism-based association studies
Q89748027GWAS significance thresholds for deep phenotyping studies can depend upon minor allele frequencies and sample size
Q48914887Gender effect of catechol-O-methyltransferase Val158Met polymorphism on suicidal behavior
Q54560033Gene polymorphisms of tissue plasminogen activator and plasminogen activator inhibitor-1 in Turkish patients with generalized aggressive periodontitis.
Q36142031Genetic association studies of complex neurological diseases
Q42788958Genetic polymorphisms in sex hormone metabolizing genes and drug response in women with epilepsy.
Q50738677Genetic risk variants for dyslexia on chromosome 18 in a German cohort.
Q46126668Genetic susceptibility to schizophrenia: role of dopaminergic pathway gene polymorphisms
Q80909154Genetic susceptibility to tardive dyskinesia in chronic schizophrenia subjects: I. Association of CYP1A2 gene polymorphism
Q38405233Genetics of Type 2 Diabetes in U.S. Hispanic/Latino Individuals: Results From the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).
Q48632226Genetics of postoperative complications following thoracic surgery.
Q33699542Genome-wide association scan of attention deficit hyperactivity disorder
Q37435321Genotyping error detection in samples of unrelated individuals without replicate genotyping
Q36320430Genotyping errors: causes, consequences and solutions
Q93075072High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow
Q54643242IL-10 promoter single nucleotide polymorphisms are significantly associated with resistance to leprosy.
Q36723300IL-18R1 and IL-18RAP SNPs may be associated with bronchopulmonary dysplasia in African-American infants
Q80866747IL-7Ralpha and multiple sclerosis risk
Q30440265Impact of genotyping errors on the type I error rate and the power of haplotype-based association methods
Q37514398Impact of measurement error on testing genetic association with quantitative traits.
Q34289324Improving the power of genetic association tests with imperfect phenotype derived from electronic medical records
Q33602996In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?
Q33459421Incorporating duplicate genotype data into linear trend tests of genetic association: methods and cost-effectiveness
Q51976718Incorporating individual error rate into association test of unmatched case-control design.
Q33290992Incorporation of genetic model parameters for cost-effective designs of genetic association studies using DNA pooling
Q36748282Increased presence of oxidized low-density lipoprotein in the left ventricular blood of subjects with cardiovascular disease.
Q33787119Intermediate sized CGG repeats are not a common cause of idiopathic premature ovarian failure
Q51976715Issues in association analysis: error control in case-control association studies for disease gene discovery.
Q30814821LRTae: improving statistical power for genetic association with case/control data when phenotype and/or genotype misclassification errors are present
Q41351582Lack of association between ADRA2B-4825 gene insertion/deletion polymorphism and migraine in Chinese Han population.
Q52626885Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data.
Q33356619Linkage disequilibrium-based quality control for large-scale genetic studies
Q33417954Missing call bias in high-throughput genotyping
Q38387616Novel exon 1 progranulin gene variant in Alzheimer's disease.
Q34743434Novel sequence variations in the brain-derived neurotrophic factor gene and association with major depression and antidepressant treatment response
Q51514163On averaging power for genetic association and linkage studies.
Q33486490On quality control measures in genome-wide association studies: a test to assess the genotyping quality of individual probands in family-based association studies and an application to the HapMap data
Q31020644Optimal genotype determination in highly multiplexed SNP data
Q33720521Optimal two-stage design for case-control association analysis incorporating genotyping errors
Q33918200Paraoxonase 1 (PON1) polymorphisms, haplotypes and activity in predicting cad risk in North-West Indian Punjabis
Q34169804Pharmacogenetic evaluation of ABCB1, Cyp2C9, Cyp2C19 and methylene tetrahydrofolate reductase polymorphisms in teratogenicity of anti-epileptic drugs in women with epilepsy
Q45031032Polymorphisms of TP53 are markers of bladder cancer vulnerability and prognosis.
Q42213908Power analysis for genome-wide association studies
Q36668489Power and sample size calculations for SNP association studies with censored time-to-event outcomes
Q47369948Power and sample size calculations for genetic case/control studies using gene-centric SNP maps: application to human chromosomes 6, 21, and 22 in three populations
Q24805056Power and sample size calculations in the presence of phenotype errors for case/control genetic association studies
Q44672078Power-based, phase-informed selection of single nucleotide polymorphisms for disease association screens
Q89455840Prediction of schizophrenia using MAOA-uVNTR polymorphism: A case-control study
Q53376534Proteomic identification of lower apolipoprotein A-I in Alzheimer's disease.
Q63502642Pyrosequencing?-based SNP allele frequency estimation in DNA pools
Q45301810Quantifying bias due to allele misclassification in case-control studies of haplotypes
Q47386037Quantifying the percent increase in minimum sample size for SNP genotyping errors in genetic model-based association studies
Q40164355R990G polymorphism of calcium-sensing receptor does produce a gain-of-function and predispose to primary hypercalciuria.
Q44347586Redefinition of the human kappa opioid receptor gene (OPRK1) structure and association of haplotypes with opiate addiction.
Q79449868Repeated measurement sampling in genetic association analysis with genotyping errors
Q41114330Reproducibility of Genotypes as Measured by the Affymetrix GeneChip® 100K Human Mapping Array Set.
Q39881833SCA8 repeat expansion: large CTA/CTG repeat alleles in neurological disorders and functional implications
Q36345804Sample size and statistical power calculation in genetic association studies.
Q36834152Searching for genes underlying susceptibility to osteoporotic fracture: current progress and future prospect
Q36430788Simultaneously correcting for population stratification and for genotyping error in case-control association studies
Q28755468Size matters: just how big is BIG?: Quantifying realistic sample size requirements for human genome epidemiology
Q37319565Smarter clustering methods for SNP genotype calling
Q92284587Statistical power in genome-wide association studies and quantitative trait locus mapping
Q46830153Study on GRIA2, GRIA3 and GRIA4 genes highlights a positive association between schizophrenia and GRIA3 in female patients
Q33443394Testing Hardy-Weinberg equilibrium and homogeneity of Hardy-Weinberg disequilibrium using complex survey data
Q51906202Testing for linkage and association across the dihydrolipoyl dehydrogenase gene region with Alzheimer's disease in three sample populations.
Q51828785The Genetics of Obsessive-Compulsive Disorder.
Q34498146The catechol-O-methyl transferase (COMT) gene as a candidate for psychiatric phenotypes: evidence and lessons
Q37090601The complex genetics of multiple sclerosis: pitfalls and prospects
Q37337266The cost effectiveness of duplicate genotyping for testing genetic association
Q51929001The effects of SNP genotyping errors on the power of the Cochran-Armitage linear trend test for case/control association studies.
Q31032793The impact of data quality on the identification of complex disease genes: experience from the Family Blood Pressure Program
Q37027403The impact of genotype calling errors on family-based studies
Q51922860The impact of genotype misclassification errors on the power to detect a gene-environment interaction using cox proportional hazards modeling.
Q51945247The impact of missing and erroneous genotypes on tagging SNP selection and power of subsequent association tests.
Q43236375The interleukin-6, serotonin transporter, and monoamine oxidase A genes and endurance performance during the South African Ironman Triathlon
Q46678805The linkage and association of the gene encoding upstream stimulatory factor 1 with type 2 diabetes and metabolic syndrome in the Chinese population
Q33260566The merits of testing Hardy-Weinberg equilibrium in the analysis of unmatched case-control data: a cautionary note
Q58864945The norepinephrine transporter gene is a candidate gene for panic disorder
Q46642951The polymorphisms of protein-tyrosine phosphatase receptor-type delta gene and its association with pediatric asthma in the Taiwanese population
Q37417890The relationship between imputation error and statistical power in genetic association studies in diverse populations
Q51564245The rs2071559 AA VEGFR-2 genotype frequency is significantly lower in neovascular age-related macular degeneration patients.
Q42555104Using both cases and controls for testing hardy-weinberg proportions in a genetic association study
Q52004489What SNP genotyping errors are most costly for genetic association studies?
Q57943305What makes a good genetic association study?
Q36854711beta-2-adrenergic receptor gene polymorphism confers susceptibility to Graves disease.
Q53315769rs5848 variant of progranulin gene is a risk of Alzheimer's disease in the Taiwanese population.

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