Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry.

scientific article

Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/PMIC.201400391
P932PMC publication ID4415483
P698PubMed publication ID25604327
P5875ResearchGate publication ID271226467

P50authorAlbert DuschlQ38320091
Christian G HuberQ38320110
Stephan AicheQ47155908
Mathias WalzerQ86564089
Oliver KohlbacherQ29998906
P2093author name stringKnut Reinert
Timo Sachsenberg
Erhan Kenar
Theresa Kristl
Michael R Berthold
Bernd Wiswedel
Matthew Boyles
P2860cites workAn automated pipeline for high-throughput label-free quantitative proteomicsQ34326747
TOPP--the OpenMS proteomics pipelineQ34604124
qcML: an exchange format for quality control metrics from mass spectrometry experimentsQ38417783
Probabilistic Consensus Scoring Improves Tandem Mass Spectrometry Peptide IdentificationQ57011814
OpenMS - an open-source software framework for mass spectrometryQ21284208
HMDB: the Human Metabolome DatabaseQ23039065
Probability-based protein identification by searching sequence databases using mass spectrometry dataQ27860736
Open mass spectrometry search algorithmQ28286936
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audienceQ28654922
TANDEM: matching proteins with tandem mass spectraQ29615238
Automated label-free quantification of metabolites from liquid chromatography-mass spectrometry dataQ30687071
A geometric approach for the alignment of liquid chromatography-mass spectrometry dataQ31119518
General statistical modeling of data from protein relative expression isobaric tags.Q33883919
Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MSQ34192662
TOPPAS: a graphical workflow editor for the analysis of high-throughput proteomics dataQ34267896
P433issue8
P921main subjectautomationQ184199
visualizationQ451553
workflowQ627335
data analysisQ1988917
P304page(s)1443-1447
P577publication date2015-02-14
P1433published inProteomicsQ15614164
P859sponsorManaging Risks of NanoparticlesQ55095479
Development of reference methods for hazard identification, risk assessment and LCA of engineered nanomaterialsQ55095485
P1476titleWorkflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry
P478volume15

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Q38934072Computational quality control tools for mass spectrometry proteomics
Q28648175Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry
Q30250980ImmunoNodes - graphical development of complex immunoinformatics workflows
Q99241247Integration of the ImageJ Ecosystem in the KNIME Analytics Platform
Q28278187OpenMS: a flexible open-source software platform for mass spectrometry data analysis
Q55255511Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics.
Q38431677Systems biology guided by XCMS Online metabolomics

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