Compartmentalization of the Edinburgh Human Metabolic Network

scientific article

Compartmentalization of the Edinburgh Human Metabolic Network is …
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scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/HaoMZG10
P6179Dimensions Publication ID1002949097
P356DOI10.1186/1471-2105-11-393
P8608Fatcat IDrelease_an6dwv5xn5fb5iayq4htp5okxm
P932PMC publication ID2918583
P698PubMed publication ID20649990
P5875ResearchGate publication ID45281065

P2093author name stringTong Hao
Igor Goryanin
Xue-Ming Zhao
Hong-Wu Ma
P2860cites workComputational prediction of human metabolic pathways from the complete human genomeQ21092879
Human very-long-chain acyl-CoA synthetase: cloning, topography, and relevance to branched-chain fatty acid metabolismQ22009362
Molecular cloning, sequencing and expression studies of the human breast cancer cell glutaminaseQ22011014
L-Pipecolic acid oxidase, a human enzyme essential for the degradation of L-pipecolic acid, is most similar to the monomeric sarcosine oxidasesQ22011106
Gene ontology: tool for the unification of biologyQ23781406
Regional localization of the human glutaminase (GLS) and interleukin-9 (IL9) genes by in situ hybridizationQ24294780
Participation of two members of the very long-chain acyl-CoA synthetase family in bile acid synthesis and recyclingQ24295748
Subcellular localization of iron regulatory proteins to Golgi and ER membranesQ24320755
Sequence analysis of a cDNA encoding a human nuclear pore complex protein, hnup153Q24324042
Enzyme-specific profiles for genome annotation: PRIAMQ24642072
Global reconstruction of the human metabolic network based on genomic and bibliomic dataQ24677060
Phytanic acid and pristanic acid are oxidized by sequential peroxisomal and mitochondrial reactions in cultured fibroblastsQ28610856
ER-to-Golgi transport visualized in living cellsQ29547526
Functions of lysosomesQ29614182
Reactome knowledgebase of human biological pathways and processesQ29617596
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organismsQ30763008
Microbial genomes and "missing" enzymes: redefining biochemical pathways.Q33767979
The molecular basis of lysosomal storage diseases and their treatmentQ33902196
The connectivity structure, giant strong component and centrality of metabolic networksQ34215978
Missing genes in metabolic pathways: a comparative genomics approachQ35114448
TransportDB: a comprehensive database resource for cytoplasmic membrane transport systems and outer membrane channelsQ35537097
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic modelQ35574107
The Edinburgh human metabolic network reconstruction and its functional analysisQ36052649
Branched-chain [corrected] amino acid metabolism: implications for establishing safe intakesQ36147749
Acid ceramidase and human diseaseQ36634467
Porphyria and porphyrin metabolismQ37918819
Peroxisomal disorders in neurologyQ39561207
Aberrant expression of N-acetylglucosaminyltransferase-IVa and IVb (GnT-IVa and b) in pancreatic cancerQ40325695
Tissue-specific regulation of iron metabolism and heme synthesis: distinct control mechanisms in erythroid cells.Q41285748
Studies on the metabolic fate of n-3 polyunsaturated fatty acidsQ44535894
Design and optimization of lentiviral vectors for transfer of GALC expression in Twitcher brain.Q45858717
A molecular model of human branched-chain amino acid metabolismQ46762438
Role of mitochondrial transamination in branched chain amino acid metabolism.Q52491975
Phytanic acid alpha-oxidation. Differential subcellular localization in rat and human tissues and its inhibition by nycodenzQ70695949
Characterization of acyl-CoA thioesterase activity in isolated rat liver peroxisomes. Partial purification and characterization of a long-chain acyl-CoA thioesteraseQ72684252
Identification, separation, and characterization of acyl-coenzyme A dehydrogenases involved in mitochondrial beta-oxidation in higher plantsQ95294818
P921main subjectmetabolic networkQ2263094
P304page(s)393
P577publication date2010-07-22
P1433published inBMC BioinformaticsQ4835939
P1476titleCompartmentalization of the Edinburgh Human Metabolic Network
P478volume11

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cites work (P2860)
Q57714348A Critical Evaluation of Methods for the Reconstruction of Tissue-Specific Models
Q29614690A community-driven global reconstruction of human metabolism.
Q33722800A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1.
Q35024851A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions
Q57451675Accelerating the Drug Development Pipeline with Genome-Scale Metabolic Network Reconstructions
Q36790849Advanced stoichiometric analysis of metabolic networks of mammalian systems
Q86935153Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation
Q33780813An atlas of genetic influences on human blood metabolites
Q31170155Analysing Algorithms and Data Sources for the Tissue-Specific Reconstruction of Liver Healthy and Cancer Cells
Q30665314Analyzing LC/MS metabolic profiling data in the context of existing metabolic networks
Q34258176Anomalies in network bridges involved in bile Acid metabolism predict outcomes of colorectal cancer patients
Q35021687Comparison of human cell signaling pathway databases--evolution, drawbacks and challenges.
Q92875437Compartment and hub definitions tune metabolic networks for metabolomic interpretations
Q41216115Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils.
Q34785750Computational strategies for a system-level understanding of metabolism
Q34784948Consensus and conflict cards for metabolic pathway databases
Q28535399Controllability in cancer metabolic networks according to drug targets as driver nodes
Q31039028Critical assessment of human metabolic pathway databases: a stepping stone for future integration
Q48446993Detecting and investigating substrate cycles in a genome-scale human metabolic network
Q35772557Dissecting Germ Cell Metabolism through Network Modeling
Q64069579Elucidation of Novel Therapeutic Targets for Acute Myeloid Leukemias with - Fusion
Q37930590Eukaryotic metabolism: measuring compartment fluxes
Q28538763Fast reconstruction of compact context-specific metabolic network models
Q34646772Finding novel pharmaceuticals in the systems biology era using multiple effective drug targets, phenotypic screening and knowledge of transporters: where drug discovery went wrong and how to fix it.
Q28539247Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks
Q64993402Genetic Predisposition for Immune System, Hormone, and Metabolic Dysfunction in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome: A Pilot Study.
Q45745547Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease
Q38101307Genome-scale modeling of human metabolism - a systems biology approach
Q37964549Growing trend of CE at the omics level: the frontier of systems biology--an update
Q91693204Human Systems Biology and Metabolic Modelling: A Review-From Disease Metabolism to Precision Medicine
Q38222596Human metabolic network: reconstruction, simulation, and applications in systems biology
Q92879319Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective
Q34334051Integration of clinical data with a genome-scale metabolic model of the human adipocyte
Q38064287Knowledge representation in metabolic pathway databases.
Q33920397MetDisease--connecting metabolites to diseases via literature
Q28084835Metabolomics and diabetes: analytical and computational approaches
Q27144251Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery
Q34089197Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.
Q44501708Modelling pyruvate dehydrogenase under hypoxia and its role in cancer metabolism.
Q38093187Network pharmacology strategies toward multi-target anticancer therapies: from computational models to experimental design principles
Q38102990Novel insights into obesity and diabetes through genome-scale metabolic modeling
Q35231088Prioritizing candidate disease metabolites based on global functional relationships between metabolites in the context of metabolic pathways
Q51338335RCM: a novel association approach to search for coronary artery disease genetic related metabolites based on SNPs and metabolic network.
Q57714343Reconstruction of Metabolic Models for Liver Cancer Cells
Q28483779Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT
Q30902292Reconstruction of genome-scale human metabolic models using omics data
Q38154674Software platforms to facilitate reconstructing genome-scale metabolic networks
Q31157876Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data
Q30707670SysBioCube: A Data Warehouse and Integrative Data Analysis Platform Facilitating Systems Biology Studies of Disorders of Military Relevance
Q34467142Systems biology approaches for studying the pathogenesis of non-alcoholic fatty liver disease
Q48766685The reconstruction and analysis of tissue specific human metabolic networks
Q28397964Using gene expression signatures to identify novel treatment strategies in gulf war illness
Q30426796Whole-genome metabolic network reconstruction and constraint-based modeling
Q35171744iBIG: an integrative network tool for supporting human disease mechanism studies

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