| scholarly article | Q13442814 |
| P50 | author | Ruedi Aebersold | Q7377799 |
| Lars Malmström | Q30347545 | ||
| Hannes L. Röst | Q39404671 | ||
| P2860 | cites work | Mass spectrometry-based proteomics | Q28182890 |
| Global quantification of mammalian gene expression control | Q28238103 | ||
| Differential diagnosis of azoospermia with proteomic biomarkers ECM1 and TEX101 quantified in seminal plasma | Q28302387 | ||
| Too many roads not taken | Q28305073 | ||
| Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry | Q28648175 | ||
| Skyline: an open source document editor for creating and analyzing targeted proteomics experiments | Q30080030 | ||
| Application of machine learning to proteomics data: classification and biomarker identification in postgenomics biology | Q30676067 | ||
| Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition | Q30684680 | ||
| DIANA--algorithmic improvements for analysis of data-independent acquisition MS data | Q30864255 | ||
| DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics | Q30884914 | ||
| Building high-quality assay libraries for targeted analysis of SWATH MS data | Q30891496 | ||
| Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues. | Q30901756 | ||
| Mass spectrometry and protein analysis | Q33239890 | ||
| More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS. | Q33817365 | ||
| Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness. | Q33850638 | ||
| A blood-based proteomic classifier for the molecular characterization of pulmonary nodules. | Q33968948 | ||
| Dissecting spatio-temporal protein networks driving human heart development and related disorders | Q34033622 | ||
| Options and considerations when selecting a quantitative proteomics strategy | Q34125509 | ||
| Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis | Q34133645 | ||
| Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast | Q34156122 | ||
| Mass spectrometry-based proteomics for systems biology | Q34240691 | ||
| Multilayered genetic and omics dissection of mitochondrial activity in a mouse reference population | Q34266060 | ||
| Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics | Q34333925 | ||
| A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis | Q34555110 | ||
| Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer | Q34602348 | ||
| Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system | Q35026886 | ||
| A repository of assays to quantify 10,000 human proteins by SWATH-MS. | Q35066504 | ||
| Quantitative variability of 342 plasma proteins in a human twin population | Q35174121 | ||
| Efficient visualization of high-throughput targeted proteomics experiments: TAPIR. | Q35581032 | ||
| Non-invasive prognostic protein biomarker signatures associated with colorectal cancer | Q36057578 | ||
| Prediction of colorectal cancer diagnosis based on circulating plasma proteins | Q36057583 | ||
| A computational tool to detect and avoid redundancy in selected reaction monitoring | Q36144204 | ||
| Selected reaction monitoring for quantitative proteomics: a tutorial | Q36973024 | ||
| Targeted proteomics reveals strain-specific changes in the mouse insulin and central metabolic pathways after a sustained high-fat diet | Q37072653 | ||
| Unique ion signature mass spectrometry, a deterministic method to assign peptide identity. | Q37343055 | ||
| Bioinformatic challenges in targeted proteomics | Q38032313 | ||
| Machine learning applications in genetics and genomics | Q38463061 | ||
| Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps | Q39404529 | ||
| Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis | Q40816049 | ||
| OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data | Q48317444 | ||
| P433 | issue | 22 | |
| P921 | main subject | systems biology | Q815297 |
| reproducibility | Q1425625 | ||
| P304 | page(s) | 3926-3931 | |
| P577 | publication date | 2015-11-01 | |
| P1433 | published in | Molecular Biology of the Cell | Q2338259 |
| P1476 | title | Reproducible quantitative proteotype data matrices for systems biology | |
| P478 | volume | 26 |
| Q89856623 | A Proteogenomic Resource Enabling Integrated Analysis of Listeria Genotype-Proteotype-Phenotype Relationships |
| Q91916133 | Advances in Higher Order Multiplexing Techniques in Proteomics |
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| Q93156200 | Beyond Genes: Re-Identifiability of Proteomic Data and Its Implications for Personalized Medicine |
| Q88596869 | BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes |
| Q50230791 | Changes in Relative Thylakoid Protein Abundance Induced by Fluctuating Light in the Diatom Thalassiosira pseudonana |
| Q40226882 | Development of a Quantitative SRM-Based Proteomics Method to Study Iron Metabolism of Synechocystis sp. PCC 6803. |
| Q94955710 | DrawAlignR: An Interactive Tool for Across Run Chromatogram Alignment Visualization |
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| Q95820206 | HyperQuant-A Computational Pipeline for Higher Order Multiplexed Quantitative Proteomics |
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| Q90985789 | Proteoform Analysis to Fulfill Unmet Clinical Needs and Reach Global Standardization of Protein Measurands in Clinical Chemistry Proteomics |
| Q38676266 | Quantitative proteomics: challenges and opportunities in basic and applied research |
| Q38803198 | Study of O-Phosphorylation Sites in Proteins Involved in Photosynthesis-Related Processes in Synechocystis sp. Strain PCC 6803: Application of the SRM Approach |
| Q37225838 | TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics |
| Q38636159 | Targeted degradomics in protein terminomics and protease substrate discovery |
| Q52656718 | The Relationship between Alternative Splicing and Proteomic Complexity. |
| Q38805134 | Undiscovered Physiology of Transcript and Protein Networks |
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