Q34555110 | A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis |
Q36144204 | A computational tool to detect and avoid redundancy in selected reaction monitoring |
Q37432423 | A multicenter study benchmarks software tools for label-free proteome quantification |
Q35066504 | A repository of assays to quantify 10,000 human proteins by SWATH-MS. |
Q40816049 | Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis |
Q95322052 | Amino acid and lipid metabolism in post-gestational diabetes and progression to type 2 diabetes: A metabolic profiling study |
Q31161210 | Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms |
Q60548401 | Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms |
Q36335520 | BioContainers: An open-source and community-driven framework for software standardization |
Q114867182 | DIAMetAlyzer allows automated false-discovery rate-controlled analysis for data-independent acquisition in metabolomics |
Q30864255 | DIANA--algorithmic improvements for analysis of data-independent acquisition MS data |
Q63493258 | DIAlignR Provides Precise Retention Time Alignment Across Distant Runs in DIA and Targeted Proteomics |
Q92419751 | Deep learning adds an extra dimension to peptide fragmentation |
Q35581032 | Efficient visualization of high-throughput targeted proteomics experiments: TAPIR. |
Q28648175 | Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry |
Q57167337 | From hype to reality: data science enabling personalized medicine |
Q50434557 | Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide |
Q60922248 | High-frequency actionable pathogenic exome variants in an average-risk cohort |
Q30982025 | Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry |
Q36399003 | Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. |
Q50110810 | Integrative Personal Omics Profiles during Periods of Weight Gain and Loss. |
Q92383029 | Longitudinal multi-omics of host-microbe dynamics in prediabetes |
Q89726822 | Machine Learning in Mass Spectrometric Analysis of DIA Data |
Q30787624 | Numerical compression schemes for proteomics mass spectrometry data |
Q28278187 | OpenMS: a flexible open-source software platform for mass spectrometry data analysis |
Q48317444 | OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data |
Q112297899 | PRMT5 inhibition disrupts splicing and stemness in glioblastoma |
Q35026886 | Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system |
Q38676266 | Quantitative proteomics: challenges and opportunities in basic and applied research |
Q39404529 | Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps |
Q34333925 | Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics |
Q31018998 | Reproducible quantitative proteotype data matrices for systems biology |
Q38616270 | Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses |
Q59639165 | Statistical elimination of spectral features with large between-run variation enhances quantitative protein-level conclusions in experiments with data-independent spectral acquisition |
Q39560421 | Systems-level Proteomics of Two Ubiquitous Leaf Commensals Reveals Complementary Adaptive Traits for Phyllosphere Colonization |
Q37225838 | TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics |
Q34133645 | Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis |
Q34727765 | The Mtb proteome library: A resource of assays to quantify the complete proteome of mycobacterium tuberculosis |
Q30806107 | aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data |
Q103805733 | diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition |
Q38451051 | pyOpenMS: a Python-based interface to the OpenMS mass-spectrometry algorithm library |
Q28828370 | xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry |