Directed evolution strategies for enantiocomplementary haloalkane dehalogenases: from chemical waste to enantiopure building blocks

scientific article

Directed evolution strategies for enantiocomplementary haloalkane dehalogenases: from chemical waste to enantiopure building blocks is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/CBIC.201100579
P698PubMed publication ID22109980
P5875ResearchGate publication ID51823541

P2093author name stringDick B Janssen
Robert J Floor
Jan-Metske van der Laan
Hein J Wijma
Jan G E van Leeuwen
P2860cites workStructure-guided recombination creates an artificial family of cytochromes P450.Q21146061
DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolutionQ24562755
SCHEMA recombination of a fungal cellulase uncovers a single mutation that contributes markedly to stabilityQ24648550
Haloalkane dehalogenases: structure of a Rhodococcus enzymeQ27620589
Structure and mechanism of a bacterial haloalcohol dehalogenase: a new variation of the short-chain dehydrogenase/reductase fold without an NAD(P)H binding siteQ27642251
Thermostable Bacillus subtilis lipases: in vitro evolution and structural insightQ27651025
Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineeringQ27663578
Atomic resolution studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnelsQ27664335
Natural diversity to guide focused directed evolutionQ28289669
Thermostabilization of an esterase by alignment-guided focussed directed evolutionQ28295698
Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional enzymesQ28298658
Increasing the precision of comparative models with YASARA NOVA-a self-parameterizing force fieldQ28874041
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibilityQ29547658
Thermofluor-based high-throughput stability optimization of proteins for structural studiesQ29614747
HotSpot Wizard: a web server for identification of hot spots in protein engineering.Q30377457
Directed evolution of enzymes for applied biocatalysisQ30823434
Directed evolution study of temperature adaptation in a psychrophilic enzymeQ30851002
User-friendly algorithms for estimating completeness and diversity in randomized protein-encoding librariesQ30967215
Better library design: data-driven protein engineeringQ31087378
Novel methods for directed evolution of enzymes: quality, not quantityQ31105264
Efficient screening of fungal cellobiohydrolase class I enzymes for thermostabilizing sequence blocks by SCHEMA structure-guided recombinationQ39111595
Laboratory evolution of toluene dioxygenase to accept 4-picoline as a substrateQ39492303
Haloalkane-utilizing Rhodococcus strains isolated from geographically distinct locations possess a highly conserved gene cluster encoding haloalkane catabolismQ39539197
Roles of horizontal gene transfer and gene integration in evolution of 1,3-dichloropropene- and 1,2-dibromoethane-degradative pathwaysQ39587105
Site-saturation mutagenesis of tryptophan 116 of Saccharomyces pastorianus old yellow enzyme uncovers stereocomplementary variantsQ40001594
Sequence saturation mutagenesis (SeSaM): a novel method for directed evolutionQ40695874
Manipulating the Stereoselectivity of Limonene Epoxide Hydrolase by Directed Evolution Based on Iterative Saturation MutagenesisQ42854484
Structurally Informed Site-Directed Mutagenesis of a Stereochemically Promiscuous Aldolase To Afford Stereochemically Complementary BiocatalystsQ42946960
Directed evolution of an antitumor drug (arginine deiminase PpADI) for increased activity at physiological pH.Q43161107
Mutations in distant residues moderately increase the enantioselectivity of Pseudomonas fluorescens esterase towards methyl 3bromo-2-methylpropanoate and ethyl 3phenylbutyrateQ44436779
Laboratory evolution of cytochrome p450 BM-3 monooxygenase for organic cosolventsQ44745675
Directed evolution of enantioselective enzymes: an unconventional approach to asymmetric catalysis in organic chemistryQ45083234
Focusing mutations into the P. fluorescens esterase binding site increases enantioselectivity more effectively than distant mutationsQ45233927
Loop grafting of Bacillus subtilis lipase A: inversion of enantioselectivity.Q46415327
Strategies for the in vitro evolution of protein function: enzyme evolution by random recombination of improved sequencesQ46855416
Improving catalytic function by ProSAR-driven enzyme evolutionQ46928936
Engineering endoglucanase II from Trichoderma reesei to improve the catalytic efficiency at a higher pH optimumQ47717511
The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064.Q48056123
Phylogenetic analysis of haloalkane dehalogenasesQ48414049
Indicator media for microorganisms degrading chlorinated pesticidesQ50961432
Structure-guided consensus approach to create a more thermostable penicillin G acylaseQ51150471
A novel solid phase technology for high-throughput gene synthesis.Q51869754
Rational evolutionary design: The theory of in vitro protein evolutionQ56690317
Creation of an amino acid network of structurally coupled residues in the directed evolution of a thermostable enzymeQ56897572
Directed evolution of a Baeyer-Villiger monooxygenase to enhance enantioselectivityQ56897621
Greatly reduced amino acid alphabets in directed evolution: making the right choice for saturation mutagenesis at homologous enzyme positionsQ56897652
Iterative saturation mutagenesis on the basis of B factors as a strategy for increasing protein thermostabilityQ56898721
Designing new Baeyer-Villiger monooxygenases using restricted CASTingQ56898762
Directed evolution of an esterase from Pseudomonas fluorescens yields a mutant with excellent enantioselectivity and activity for the kinetic resolution of a chiral building blockQ56899102
Directed evolution of cyclohexanone monooxygenases: enantioselective biocatalysts for the oxidation of prochiral thioethersQ56899921
Finding better protein engineering strategiesQ57189348
Assembly of designed oligonucleotides as an efficient method for gene recombination: a new tool in directed evolutionQ31123994
Optimising enzyme function by directed evolution.Q31155398
Automated design of degenerate codon librariesQ33225634
Enantioselective epoxidation of terminal alkenes to (R)- and (S)-epoxides by engineered cytochromes P450 BM-3.Q33225680
Expanding the substrate scope of enzymes: combining mutations obtained by CASTingQ33247423
Transversion-enriched sequence saturation mutagenesis (SeSaM-Tv+): a random mutagenesis method with consecutive nucleotide exchanges that complements the bias of error-prone PCR.Q33306227
Amino acid alphabet size in protein evolution experiments: better to search a small library thoroughly or a large library sparsely?Q33326227
Addressing the numbers problem in directed evolutionQ33345289
Knowledge-guided laboratory evolution of protein thermolabilityQ33392056
Enzyme engineering for enantioselectivity: from trial-and-error to rational design?Q33515950
Consensus protein design without phylogenetic biasQ33569414
Status of protein engineering for biocatalysts: how to design an industrially useful biocatalystQ33758053
Bacterial degradation of xenobiotic compounds: evolution and distribution of novel enzyme activitiesQ33991671
Biodegradation of 1,2,3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase geneQ34101277
Iterative saturation mutagenesis accelerates laboratory evolution of enzyme stereoselectivity: rigorous comparison with traditional methods.Q34120009
Combining computational and experimental screening for rapid optimization of protein propertiesQ34414821
Pharmacological profile of the "triple" monoamine neurotransmitter uptake inhibitor, DOV 102,677.Q34517414
Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.Q34612025
Constructing and analyzing the fitness landscape of an experimental evolutionary processQ34810511
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrateQ34999009
Evolving haloalkane dehalogenasesQ35737586
Directed evolution of a fucosidase from a galactosidase by DNA shuffling and screeningQ36137488
Evolving strategies for enzyme engineeringQ36188225
Directed evolution of a thermostable esterase.Q36611228
Directed enzyme evolution: climbing fitness peaks one amino acid at a timeQ37244268
Enantiocomplementary enzymes: classification, molecular basis for their enantiopreference, and prospects for mirror-image biotransformations.Q37292553
Directed evolution: new parts and optimized functionQ37416828
Controlling the enantioselectivity of enzymes by directed evolution: practical and theoretical ramificationsQ37648687
Protein engineering of microbial enzymesQ37695466
The alpha/beta-hydrolase fold 3DM database (ABHDB) as a tool for protein engineeringQ37769173
Laboratory evolution of stereoselective enzymes: a prolific source of catalysts for asymmetric reactionsQ37780497
Learning from directed evolution: Further lessons from theoretical investigations into cooperative mutations in lipase enantioselectivityQ38307242
Directed evolution of a para-nitrobenzyl esterase for aqueous-organic solventsQ38359408
P433issue1
P921main subjectdirected evolutionQ440681
P304page(s)137-148
P577publication date2011-11-23
P1433published inChemBioChemQ634395
P1476titleDirected evolution strategies for enantiocomplementary haloalkane dehalogenases: from chemical waste to enantiopure building blocks
P478volume13

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cites work (P2860)
Q35638773A selection assay for haloalkane dehalogenase activity based on toxic substrates
Q35362816Characterization of a recombinant (+)-γ-lactamase from Microbacterium hydrocarbonoxydans which provides evidence that two enantiocomplementary γ-lactamases are in the strain
Q41204500Combinatorial metabolic engineering of Pseudomonas putida KT2440 for efficient mineralization of 1,2,3-trichloropropane
Q35197299Computational library design for increasing haloalkane dehalogenase stability
Q48368998Different Structural Origins of the Enantioselectivity of Haloalkane Dehalogenases toward Linear β-Haloalkanes: Open-Solvated versus Occluded-Desolvated Active Sites.
Q35087224Draft genome sequence of Rhodococcus rhodochrous strain ATCC 17895
Q35221137Exploring the enantioselective mechanism of halohydrin dehalogenase from Agrobacterium radiobacter AD1 by iterative saturation mutagenesis
Q38042407Haloalkane dehalogenases: biotechnological applications.
Q27671016Hydroxynitrile Lyases with α/β-Hydrolase Fold: Two Enzymes with Almost Identical 3D Structures but Opposite Enantioselectivities and Different Reaction Mechanisms
Q35196065Improvement of biocatalysts for industrial and environmental purposes by saturation mutagenesis
Q38117861Inverting hydrolases and their use in enantioconvergent biotransformations
Q35182675Lessons from diversity of directed evolution experiments by an analysis of 3,000 mutations
Q51061048Maximizing the efficiency of multienzyme process by stoichiometry optimization.
Q38172428Microbial alkyl- and aryl-sulfatases: mechanism, occurrence, screening and stereoselectivities
Q38587501Properties and biotechnological applications of natural and engineered haloalkane dehalogenases
Q47215183Protein engineering of oxidoreductases utilizing nicotinamide-based coenzymes, with applications in synthetic biology.
Q92644514Structure-based directed evolution improves S. cerevisiae growth on xylose by influencing in vivo enzyme performance
Q38287400Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently
Q36150163Transformation and biodegradation of 1,2,3-trichloropropane (TCP).

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