Evolving stochastic context--free grammars for RNA secondary structure prediction

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Evolving stochastic context--free grammars for RNA secondary structure prediction is …
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scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/AndersonTSHL12
P6179Dimensions Publication ID1004548902
P356DOI10.1186/1471-2105-13-78
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/1471-2105-13-78
P932PMC publication ID3464655
P698PubMed publication ID22559985
P5875ResearchGate publication ID224912541

P50authorPaula TataruQ84072081
Joe StainesQ111051134
P2093author name stringJotun Hein
Rune Lyngsø
James Wj Anderson
Joe Staines
P2860cites workRNAalifold: improved consensus structure prediction for RNA alignmentsQ21284196
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure predictionQ21284284
The Ribonuclease P DatabaseQ24548410
Rfam: annotating non-coding RNAs in complete genomesQ24558580
A comprehensive comparison of comparative RNA structure prediction approachesQ24561451
TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequencesQ24608886
Pfold: RNA secondary structure prediction using stochastic context-free grammarsQ24671753
An evolutionary method for learning HMM structure: prediction of protein secondary structureQ24680309
Compilation of tRNA sequences and sequences of tRNA genesQ24793116
The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAsQ24802442
Effective ambiguity checking in biosequence analysisQ24814538
The tmRDB and SRPDB resourcesQ25257025
CONTRAfold: RNA secondary structure prediction without physics-based modelsQ28254581
The structure of NoRC-associated RNA is crucial for targeting the chromatin remodelling complex NoRC to the nucleolusQ28591923
Hidden Markov models in computational biology. Applications to protein modelingQ29614397
The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acidsQ29619486
The Protein Data Bank and structural genomicsQ30760747
RNA STRAND: the RNA secondary structure and statistical analysis databaseQ33359913
RNA secondary structure prediction using stochastic context-free grammars and evolutionary historyQ33866236
UNAFold: software for nucleic acid folding and hybridizationQ34810481
Method for predicting RNA secondary structureQ35080300
Stochastic context-free grammars for tRNA modelingQ37587522
Specific alignment of structured RNA: stochastic grammars and sequence annealingQ42535764
RNA pseudoknot modeling using intersections of stochastic context free grammars with applications to database search.Q48067056
Metrics on RNA secondary structures.Q52076590
P304page(s)78
P577publication date2012-05-04
P1433published inBMC BioinformaticsQ4835939
P1476titleEvolving stochastic context--free grammars for RNA secondary structure prediction
P478volume13

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cites work (P2860)
Q41856558Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding
Q34569692Characterising RNA secondary structure space using information entropy
Q36549629Prediction of multi-drug resistance transporters using a novel sequence analysis method.
Q34698694Quantifying variances in comparative RNA secondary structure prediction
Q41832836The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective

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