An evolutionary method for learning HMM structure: prediction of protein secondary structure

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An evolutionary method for learning HMM structure: prediction of protein secondary structure is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/WonHPK07
P6179Dimensions Publication ID1030829775
P356DOI10.1186/1471-2105-8-357
P3181OpenCitations bibliographic resource ID3562973
P932PMC publication ID2072961
P698PubMed publication ID17888163
P5875ResearchGate publication ID5956187

P50authorAnders KroghQ4753847
Thomas HamelryckQ51369500
Kyoung-Jae WonQ80422438
Adam Prugel-BennettQ112549452
P2860cites workGapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Protein secondary structure prediction based on position-specific scoring matricesQ27860483
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical featuresQ27860675
Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteinsQ27860987
Prediction of the Secondary Structure of Proteins from their Amino Acid SequenceQ28131736
Learning representations by back-propagating errorsQ29469983
Prediction of protein secondary structure at better than 70% accuracyQ29547323
Stochastic motif extraction using hidden Markov modelQ52220789
Hidden neural networks.Q52224744
Two methods for improving performance of an HMM and their application for gene finding.Q52282383
Prediction of protein secondary structure by the hidden Markov model.Q52398040
Simple consensus procedures are effective and sufficient in secondary structure prediction.Q54564327
Evolving the structure of hidden Markov modelsQ57029395
Training HMM structure with genetic algorithm for biological sequence analysisQ57029431
Algorithms for prediction of alpha-helical and beta-structural regions in globular proteinsQ68822331
Position-based sequence weightsQ72819629
SABmark--a benchmark for sequence alignment that covers the entire known fold spaceQ80500501
Application of multiple sequence alignment profiles to improve protein secondary structure predictionQ29614377
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.Q30330078
HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.Q30894197
Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequencesQ32060619
PDB file parser and structure class implemented in PythonQ33195213
Protein secondary structure prediction for a single-sequence using hidden semi-Markov modelsQ33237952
Analysis of an optimal hidden Markov model for secondary structure predictionQ33266463
UniProt archiveQ33976927
EVA: large-scale analysis of secondary structure predictionQ34113376
Predicting the secondary structure of globular proteins using neural network modelsQ34168624
Exploiting the past and the future in protein secondary structure predictionQ40771308
A novel method for protein secondary structure prediction using dual-layer SVM and profiles.Q45966836
A novel method of protein secondary structure prediction with high segment overlap measure: support vector machine approach.Q45967263
A simple and fast secondary structure prediction method using hidden neural networks.Q48523184
Secondary structure prediction with support vector machines.Q48581112
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectprotein structureQ735188
protein structure predictionQ899656
P304page(s)357
P577publication date2007-09-21
P1433published inBMC BioinformaticsQ4835939
P1476titleAn evolutionary method for learning HMM structure: prediction of protein secondary structure
P478volume8

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cites work (P2860)
Q28086832A review of three different studies on hidden markov models for epigenetic problems: a computational perspective
Q31061020Evolving stochastic context--free grammars for RNA secondary structure prediction
Q37700192Hidden Markov Models and their Applications in Biological Sequence Analysis
Q39256768Improving protein secondary structure prediction using a simple k-mer model
Q47963481Introduction to Hidden Markov Models and Its Applications in Biology
Q28743494Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure
Q30152659Predicting Beta Barrel Transmembrane Proteins Using HMMs
Q55516095Protein Secondary Structure Prediction Based on Data Partition and Semi-Random Subspace Method.
Q30392787Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach
Q35618898SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles
Q30382761Template-based protein modeling: recent methodological advances.
Q42278478The identification of novel cyclic AMP-dependent protein kinase anchoring proteins using bioinformatic filters and peptide arrays

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