| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bioinformatics/HamelryckM03 |
| P356 | DOI | 10.1093/BIOINFORMATICS/BTG299 |
| P698 | PubMed publication ID | 14630660 |
| P5875 | ResearchGate publication ID | 8996610 |
| P50 | author | Thomas Hamelryck | Q51369500 |
| P2093 | author name string | Bernard Manderick | |
| P4510 | describes a project that uses | Python | Q28865 |
| P433 | issue | 17 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Python | Q28865 |
| Protein Data Bank | Q7251429 | ||
| P6104 | maintained by WikiProject | WikiProject Software | Q15659621 |
| P304 | page(s) | 2308-2310 | |
| P577 | publication date | 2003-11-01 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | PDB file parser and structure class implemented in Python | |
| P478 | volume | 19 |
| Q92203069 | 2StrucCompare: a webserver for visualizing small but noteworthy differences between protein tertiary structures through interrogation of the secondary structure content |
| Q64096828 | 3D based on 2D: Calculating helix angles and stacking patterns using , an RNA Python library centered on secondary structure elements |
| Q88977483 | A Cryptic Site of Vulnerability on the Receptor Binding Domain of the SARS-CoV-2 Spike Glycoprotein |
| Q36138074 | A General Tool for Engineering the NAD/NADP Cofactor Preference of Oxidoreductases |
| Q33308249 | A primer on python for life science researchers |
| Q30427633 | Abstractions, algorithms and data structures for structural bioinformatics in PyCogent |
| Q36934204 | Abundance and Temperature Dependency of Protein-Protein Interaction Revealed by Interface Structure Analysis and Stability Evolution |
| Q94460454 | Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes |
| Q24680309 | An evolutionary method for learning HMM structure: prediction of protein secondary structure |
| Q57498055 | An open-source software ecosystem for the interactive exploration of ultrafast electron scattering data |
| Q30387249 | Applying PyRosetta molecular energies to separate properly oriented protein models from mirror models, obtained from contact maps |
| Q30360108 | Assessment of protein side-chain conformation prediction methods in different residue environments. |
| Q55252775 | Automated method to differentiate between native and mirror protein models obtained from contact maps. |
| Q48247332 | Automatic clustering of docking poses in virtual screening process using self-organizing map. |
| Q30390027 | Beyond rotamers: a generative, probabilistic model of side chains in proteins |
| Q90434162 | BioShell 3.0: Library for Processing Structural Biology Data |
| Q24643426 | Biopython: freely available Python tools for computational molecular biology and bioinformatics |
| Q30416296 | CSA: comprehensive comparison of pairwise protein structure alignments |
| Q33975599 | Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the PICCOLO database |
| Q34992475 | DFGmodel: predicting protein kinase structures in inactive states for structure-based discovery of type-II inhibitors |
| Q35914115 | DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities. |
| Q30369575 | Domain Hierarchy and closed Loops (DHcL): a server for exploring hierarchy of protein domain structure. |
| Q57665972 | Effects of acetylation and phosphorylation on subunit interactions in three large eukaryotic complexes |
| Q34136883 | Evol and ProDy for bridging protein sequence evolution and structural dynamics |
| Q30393263 | Fast and accurate protein substructure searching with simulated annealing and GPUs |
| Q24816013 | Full cyclic coordinate descent: solving the protein loop closure problem in Calpha space |
| Q30402159 | Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation |
| Q35800480 | Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins |
| Q98506400 | Global alignment and assessment of TRP channel transmembrane domain structures to explore functional mechanisms |
| Q30699721 | HPDB-Haskell library for processing atomic biomolecular structures in Protein Data Bank format |
| Q29048182 | Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies |
| Q30416490 | KoBaMIN: a knowledge-based minimization web server for protein structure refinement |
| Q111925765 | Lifting Industrial Ecology Modeling to a New Level of Quality and Transparency: A Call for More Transparent Publications and a Collaborative Open Source Software Framework |
| Q79479050 | LigProf: a simple tool for in silico prediction of ligand-binding sites |
| Q33875319 | MDAnalysis: a toolkit for the analysis of molecular dynamics simulations |
| Q24815220 | PALSSE: a program to delineate linear secondary structural elements from protein structures |
| Q30428673 | PARAssign--paramagnetic NMR assignments of protein nuclei on the basis of pseudocontact shifts |
| Q108127026 | PDBrenum: A webserver and program providing Protein Data Bank files renumbered according to their UniProt sequences |
| Q30431188 | PeptideBuilder: A simple Python library to generate model peptides |
| Q34669773 | Predicting the accuracy of protein-ligand docking on homology models. |
| Q30403397 | Prediction of binding hot spot residues by using structural and evolutionary parameters |
| Q33864431 | ProDy: protein dynamics inferred from theory and experiments |
| Q54257311 | Proteome-wide mapping of immune features onto Plasmodium protein three-dimensional structures. |
| Q30993527 | PyPDB: a Python API for the Protein Data Bank |
| Q35853409 | RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction |
| Q48229352 | Ramachandran mapping of peptide conformation using a large database of computed Raman and Raman optical activity spectra. |
| Q36096683 | Rational Design of Orthogonal Multipolar Interactions with Fluorine in Protein-Ligand Complexes |
| Q34539694 | Reliable B cell epitope predictions: impacts of method development and improved benchmarking |
| Q89695592 | SPECS: Integration of side-chain orientation and global distance-based measures for improved evaluation of protein structural models |
| Q36374431 | SS-map: Visualizing cooperative secondary structure elements in protein ensembles |
| Q42736483 | Sequence-based prediction of permissive stretches for internal protein tagging and knockdown. |
| Q27651286 | Short strong hydrogen bonds in proteins: a case study of rhamnogalacturonan acetylesterase |
| Q102152227 | Solution structure of Gaussia Luciferase with five disulfide bonds and identification of a putative coelenterazine binding cavity by heteronuclear NMR |
| Q37322944 | Strain analysis of protein structures and low dimensionality of mechanical allosteric couplings. |
| Q30525358 | Structural analysis of B-cell epitopes in antibody:protein complexes |
| Q28469177 | Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage |
| Q34394266 | Structure of the house dust mite allergen Der f 2: implications for function and molecular basis of IgE cross-reactivity |
| Q30659554 | TEMPy: a Python library for assessment of three-dimensional electron microscopy density fits |
| Q30377175 | Tableau-based protein substructure search using quadratic programming. |
| Q30400233 | The Impact of Native State Switching on Protein Sequence Evolution. |
| Q92561961 | The breadth of HIV-1 neutralizing antibodies depends on the conservation of key sites in their epitopes |
| Q113227793 | The pdb2sql Python Package: Parsing, Manipulation and Analysis of PDB Files Using SQL Queries |
| Q35065511 | The relationship between relative solvent accessibility and evolutionary rate in protein evolution |
| Q52331380 | The solution structure of monomeric CCL5 in complex with a doubly sulfated N-terminal segment of CCR5. |
| Q36243498 | The structural bioinformatics library: modeling in biomolecular science and beyond |
| Q57144821 | Transient antibody-antigen interactions mediate the strain-specific recognition of a conserved malaria epitope |
| Q91708649 | Two-Level Protein Methylation Prediction using structure model-based features |
| Q41119561 | Using neighborhood cohesiveness to infer interactions between protein domains |
| Q92149021 | Yvis: antibody high-density alignment visualization and analysis platform with an integrated database |
| Q30380011 | p3d--Python module for structural bioinformatics. |
| Q49999902 | ssbio: A Python Framework for Structural Systems Biology. |
Search more.