Two methods for improving performance of an HMM and their application for gene finding.

scientific article published in January 1997

Two methods for improving performance of an HMM and their application for gene finding. is …
instance of (P31):
scholarly articleQ13442814

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P698PubMed publication ID9322033

P50authorAugust KroghQ152187
P304page(s)179-186
P577publication date1997-01-01
P1433published inProceedings. International Conference on Intelligent Systems for Molecular BiologyQ27714112
P1476titleTwo methods for improving performance of an HMM and their application for gene finding
P478volume5

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cites work (P2860)
Q24803433A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins
Q24813736A computational investigation of kinetoplastid trans-splicing
Q24548409A hidden Markov model approach for determining expression from genomic tiling micro arrays
Q33523411A method of predicting changes in human gene splicing induced by genetic variants in context of cis-acting elements
Q52053598AKINbeta3, a plant specific SnRK1 protein, is lacking domains present in yeast and mammals non-catalytic beta-subunits.
Q48084240AKINbetagamma contributes to SnRK1 heterotrimeric complexes and interacts with two proteins implicated in plant pathogen resistance through its KIS/GBD sequence
Q24813102AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
Q33239004Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
Q40414434An assessment of gene prediction accuracy in large DNA sequences
Q24680309An evolutionary method for learning HMM structure: prediction of protein secondary structure
Q33443924An integrated approach to identifying cis-regulatory modules in the human genome.
Q21093642Automatic generation of gene finders for eukaryotic species
Q36684136Characterization of the mouse adeno-associated virus AAVS1 ortholog.
Q24624130Comparative genome sequence analysis of the Bpa/Str region in mouse and Man
Q33528204Decoding HMMs using the k best paths: algorithms and applications
Q41847116Evaluating bacterial gene-finding HMM structures as probabilistic logic programs
Q34505603Evaluating high-throughput ab initio gene finders to discover proteins encoded in eukaryotic pathogen genomes missed by laboratory techniques
Q24792706Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method
Q21284284Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
Q28750112Exploring the genetic basis of variation in gene predictions with a synthetic association study
Q24814380FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform
Q30719841GAZE: a generic framework for the integration of gene-prediction data by dynamic programming
Q92236949GPRED-GC: a Gene PREDiction model accounting for 5 '- 3' GC gradient
Q21284285Gene finding in novel genomes
Q24814531Gene identification in novel eukaryotic genomes by self-training algorithm
Q25257211Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
Q36995325Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
Q24816544Generalizations of Markov model to characterize biological sequences
Q33899246Genome annotation assessment in Drosophila melanogaster
Q31033205Genome-wide prediction of splice-modifying SNPs in human genes using a new analysis pipeline called AASsites
Q28740353Genomic organization and evolution of the Atlantic salmon hemoglobin repertoire
Q33279158Global discriminative learning for higher-accuracy computational gene prediction
Q41158718Hidden markov model for the prediction of transmembrane proteins using MATLAB.
Q44549665Identification and distribution of rRNH1, a gene upregulated after spinal cord primary neuron injury
Q33528227New decoding algorithms for Hidden Markov Models using distance measures on labellings
Q30163988PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins
Q24797621Pegasys: software for executing and integrating analyses of biological sequences
Q33272650Predictive modeling of plant messenger RNA polyadenylation sites.
Q99605496Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing
Q33236758Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models.
Q33249928Similarities and differences of polyadenylation signals in human and fly.
Q24649061The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts
Q90733188The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex
Q21560967The diversification of the LIM superclass at the base of the metazoa increased subcellular complexity and promoted multicellular specialization
Q37699770The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation
Q42958685Uncertainty in homology inferences: assessing and improving genomic sequence alignment
Q24816465Use of artificial genomes in assessing methods for atypical gene detection
Q21061197Using GeneWise in the Drosophila annotation experiment
Q41879999Vertebrate gene finding from multiple-species alignments using a two-level strategy
Q26740582Well-characterized sequence features of eukaryote genomes and implications for ab initio gene prediction
Q24805454cDNA2Genome: a tool for mapping and annotating cDNAs
Q34343012eShadow: a tool for comparing closely related sequences

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